Wall clock time and date at job start Mon Mar 30 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.48219 * 2 1 4 4 C 1.53093 * 109.47794 * 120.03818 * 2 1 3 5 5 C 1.53180 * 109.16207 * 177.58907 * 4 2 1 6 6 H 1.08996 * 109.54301 * 183.15160 * 5 4 2 7 7 C 1.50702 * 109.54504 * 62.96901 * 5 4 2 8 8 O 1.21282 * 119.99757 * 0.02562 * 7 5 4 9 9 N 1.34768 * 119.99956 * 180.02562 * 7 5 4 10 10 C 1.46502 * 119.99938 * 180.02562 * 9 7 5 11 11 C 1.50697 * 109.47345 * 179.97438 * 10 9 7 12 12 O 1.21302 * 119.99910 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00299 * 179.97438 * 11 10 9 14 14 C 1.37102 * 120.00364 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99872 * 0.02562 * 14 13 11 16 16 C 1.38942 * 120.00105 * 180.02562 * 14 13 11 17 17 N 1.31412 * 120.00221 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00099 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46791 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47643 * 119.99512 * 18 16 14 21 21 H 1.48503 * 109.47129 * 240.00090 * 18 16 14 22 22 C 1.53180 * 109.03380 * 303.01706 * 5 4 2 23 23 C 1.53096 * 109.16300 * 56.98167 * 22 5 4 24 24 O 1.42905 * 109.47459 * 239.97526 * 2 1 3 25 25 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46984 * 300.02356 * 1 2 3 27 27 H 1.08998 * 109.46773 * 60.01722 * 1 2 3 28 28 H 1.09000 * 109.52171 * 297.49519 * 4 2 1 29 29 H 1.08994 * 109.52452 * 57.68283 * 4 2 1 30 30 H 0.97005 * 120.00415 * 359.97438 * 9 7 5 31 31 H 1.08995 * 109.46992 * 300.00047 * 10 9 7 32 32 H 1.09006 * 109.47316 * 60.00022 * 10 9 7 33 33 H 0.96998 * 120.00205 * 0.02562 * 13 11 10 34 34 H 0.97008 * 119.99939 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.52400 * 297.07495 * 22 5 4 36 36 H 1.09004 * 109.52264 * 176.88591 * 22 5 4 37 37 H 1.09005 * 109.47867 * 182.40583 * 23 22 5 38 38 H 1.09001 * 109.48124 * 62.37304 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7225 1.2495 5 6 3.5711 -0.7712 1.2121 6 1 3.9391 -1.3331 2.0704 7 6 4.1213 0.6312 1.2539 8 8 3.3651 1.5778 1.3088 9 7 5.4535 0.8333 1.2304 10 6 5.9884 2.1966 1.2716 11 6 7.4941 2.1468 1.2346 12 8 8.0644 1.0777 1.1788 13 7 8.2071 3.2902 1.2626 14 6 9.5769 3.2449 1.2284 15 1 10.0847 2.2930 1.1786 16 6 10.3119 4.4237 1.2577 17 7 9.6941 5.5820 1.3178 18 14 12.1783 4.3621 1.2104 19 1 12.6253 2.9475 1.1439 20 1 12.6677 5.0930 0.0140 21 1 12.7258 4.9965 2.4364 22 6 4.0175 -1.4603 -0.0811 23 6 3.4306 -0.7093 -1.2792 24 8 2.0065 -0.6741 -1.1665 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3633 0.5136 -0.8901 28 1 1.7148 -0.1846 2.1398 29 1 1.6442 -1.7376 1.2707 30 1 6.0584 0.0762 1.1868 31 1 5.6218 2.7569 0.4116 32 1 5.6639 2.6866 2.1897 33 1 7.7511 4.1452 1.3069 34 1 10.2073 6.4049 1.3379 35 1 3.6612 -2.4904 -0.0867 36 1 5.1058 -1.4500 -0.1423 37 1 3.7099 -1.2202 -2.2007 38 1 3.8193 0.3090 -1.2958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323225019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:52 Heat of formation + Delta-G solvation = -136.233469 kcal Electronic energy + Delta-G solvation = -21003.318985 eV Core-core repulsion = 17652.137295 eV Total energy + Delta-G solvation = -3351.181690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65091 -38.68799 -37.83139 -34.57359 -33.92647 -33.61327 -32.68572 -31.41578 -28.14583 -27.75466 -25.02001 -24.05389 -22.70288 -21.44676 -19.81097 -19.32735 -18.11080 -16.89055 -16.34970 -16.26798 -15.73310 -15.42272 -15.36338 -14.68023 -14.56237 -14.20345 -13.91451 -13.79563 -13.51863 -12.75516 -12.54141 -12.46974 -12.25180 -12.05990 -11.96643 -11.90322 -11.66940 -11.18731 -11.16016 -10.82433 -10.50268 -10.43976 -10.35856 -9.77926 -9.68704 -9.24844 -8.83980 -8.68211 -8.14356 -6.55383 -3.97606 2.72458 3.07443 3.19497 3.24617 3.32686 3.69245 3.75362 4.08020 4.48358 4.62663 4.68135 4.82546 4.84164 5.05773 5.13086 5.17810 5.32603 5.42974 5.51275 5.53983 5.62293 5.70978 5.79375 5.83680 5.88652 5.90466 5.93204 6.02037 6.08399 6.18338 6.62943 7.23625 7.42489 7.73345 7.88019 8.36292 8.41538 9.00650 9.34895 9.82422 10.61463 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042862 B = 0.003512 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.099671 B = 7971.623413 C = 8183.384250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.086 0.914 4 C -0.126 4.126 5 C -0.112 4.112 6 H 0.102 0.898 7 C 0.513 3.487 8 O -0.546 6.546 9 N -0.705 5.705 10 C 0.108 3.892 11 C 0.427 3.573 12 O -0.598 6.598 13 N -0.548 5.548 14 C -0.305 4.305 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.894 5.894 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.148 4.148 23 C 0.060 3.940 24 O -0.384 6.384 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.411 0.589 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.532 -10.308 -1.372 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.103 0.897 4 C -0.164 4.164 5 C -0.133 4.133 6 H 0.120 0.880 7 C 0.299 3.701 8 O -0.425 6.425 9 N -0.359 5.359 10 C -0.020 4.020 11 C 0.213 3.787 12 O -0.485 6.485 13 N -0.183 5.183 14 C -0.435 4.435 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.186 4.186 23 C -0.017 4.017 24 O -0.303 6.303 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.249 0.751 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.697 -10.195 -1.496 17.140 hybrid contribution 1.293 0.403 0.293 1.386 sum -12.404 -9.792 -1.202 15.849 Atomic orbital electron populations 1.21729 0.93444 1.02285 1.02359 1.22386 0.94775 0.97105 0.84173 0.89664 1.21990 0.92852 1.01635 0.99903 1.21406 0.97500 0.93943 1.00438 0.88007 1.20541 0.82124 0.91281 0.76132 1.90635 1.57661 1.43917 1.50248 1.45759 1.06799 1.09616 1.73705 1.20961 0.93650 0.84189 1.03177 1.19738 0.87894 0.85390 0.85715 1.90497 1.71352 1.29248 1.57363 1.41808 1.07228 1.06880 1.62375 1.19783 0.80714 0.94873 1.48114 0.87604 1.25334 1.01081 0.94566 0.96726 1.69624 1.36877 0.97720 1.49179 0.85754 0.81731 0.78722 0.77867 1.19111 1.20572 1.20588 1.22212 1.01937 1.00517 0.93942 1.22541 0.81342 0.99795 0.98018 1.87875 1.20613 1.78247 1.43571 0.92302 0.91139 0.92064 0.90167 0.90682 0.75116 0.89908 0.89861 0.77042 0.91597 0.89858 0.89920 0.88593 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.56 37.16 0.36 -1.07 16 2 C 0.07 0.90 2.98 -26.68 -0.08 0.83 16 3 H 0.09 1.27 5.81 -51.93 -0.30 0.97 16 4 C -0.13 -1.39 4.56 -26.59 -0.12 -1.51 16 5 C -0.11 -1.27 3.04 -91.58 -0.28 -1.55 16 6 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 7 C 0.51 7.67 5.83 -10.99 -0.06 7.60 16 8 O -0.55 -9.56 13.85 5.56 0.08 -9.48 16 9 N -0.71 -11.25 5.41 -61.47 -0.33 -11.58 16 10 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 11 C 0.43 9.61 7.85 -10.99 -0.09 9.52 16 12 O -0.60 -14.98 15.24 5.54 0.08 -14.90 16 13 N -0.55 -13.42 5.29 -10.96 -0.06 -13.48 16 14 C -0.31 -8.21 9.68 -14.93 -0.14 -8.36 16 15 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.89 -23.67 13.05 55.50 0.72 -22.94 16 18 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.15 -1.53 5.57 -26.59 -0.15 -1.68 16 23 C 0.06 0.71 6.62 37.21 0.25 0.95 16 24 O -0.38 -5.05 10.41 -35.23 -0.37 -5.42 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.89 8.02 -51.93 -0.42 0.48 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.41 6.43 6.86 -40.82 -0.28 6.15 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.40 9.33 7.90 -40.82 -0.32 9.01 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.83 7.52 -51.93 -0.39 0.44 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.68 7.38 -51.93 -0.38 0.30 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -30.47 313.69 -6.03 -36.49 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.41 Total: 14.06 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -0.45 Total: 7.22 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.33 Total: -48.00 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.21 Total: -29.80 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.47 -6.03 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323225019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.740 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds