Wall clock time and date at job start Mon Mar 30 2020 02:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.48219 * 2 1 4 4 C 1.53093 * 109.47794 * 120.03818 * 2 1 3 5 5 C 1.53180 * 109.16207 * 177.58907 * 4 2 1 6 6 H 1.08996 * 109.54301 * 183.15160 * 5 4 2 7 7 C 1.50702 * 109.54504 * 62.96901 * 5 4 2 8 8 O 1.21282 * 119.99757 * 0.02562 * 7 5 4 9 9 N 1.34768 * 119.99956 * 180.02562 * 7 5 4 10 10 C 1.46502 * 119.99938 * 180.02562 * 9 7 5 11 11 C 1.50697 * 109.47345 * 179.97438 * 10 9 7 12 12 O 1.21302 * 119.99910 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00299 * 179.97438 * 11 10 9 14 14 C 1.37102 * 120.00364 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99872 * 0.02562 * 14 13 11 16 16 C 1.38942 * 120.00105 * 180.02562 * 14 13 11 17 17 N 1.31412 * 120.00221 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00099 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46791 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47643 * 119.99512 * 18 16 14 21 21 H 1.48503 * 109.47129 * 240.00090 * 18 16 14 22 22 C 1.53180 * 109.03380 * 303.01706 * 5 4 2 23 23 C 1.53096 * 109.16300 * 56.98167 * 22 5 4 24 24 O 1.42905 * 109.47459 * 239.97526 * 2 1 3 25 25 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46984 * 300.02356 * 1 2 3 27 27 H 1.08998 * 109.46773 * 60.01722 * 1 2 3 28 28 H 1.09000 * 109.52171 * 297.49519 * 4 2 1 29 29 H 1.08994 * 109.52452 * 57.68283 * 4 2 1 30 30 H 0.97005 * 120.00415 * 359.97438 * 9 7 5 31 31 H 1.08995 * 109.46992 * 300.00047 * 10 9 7 32 32 H 1.09006 * 109.47316 * 60.00022 * 10 9 7 33 33 H 0.96998 * 120.00205 * 0.02562 * 13 11 10 34 34 H 0.97008 * 119.99939 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.52400 * 297.07495 * 22 5 4 36 36 H 1.09004 * 109.52264 * 176.88591 * 22 5 4 37 37 H 1.09005 * 109.47867 * 182.40583 * 23 22 5 38 38 H 1.09001 * 109.48124 * 62.37304 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7225 1.2495 5 6 3.5711 -0.7712 1.2121 6 1 3.9391 -1.3331 2.0704 7 6 4.1213 0.6312 1.2539 8 8 3.3651 1.5778 1.3088 9 7 5.4535 0.8333 1.2304 10 6 5.9884 2.1966 1.2716 11 6 7.4941 2.1468 1.2346 12 8 8.0644 1.0777 1.1788 13 7 8.2071 3.2902 1.2626 14 6 9.5769 3.2449 1.2284 15 1 10.0847 2.2930 1.1786 16 6 10.3119 4.4237 1.2577 17 7 9.6941 5.5820 1.3178 18 14 12.1783 4.3621 1.2104 19 1 12.6253 2.9475 1.1439 20 1 12.6677 5.0930 0.0140 21 1 12.7258 4.9965 2.4364 22 6 4.0175 -1.4603 -0.0811 23 6 3.4306 -0.7093 -1.2792 24 8 2.0065 -0.6741 -1.1665 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3633 0.5136 -0.8901 28 1 1.7148 -0.1846 2.1398 29 1 1.6442 -1.7376 1.2707 30 1 6.0584 0.0762 1.1868 31 1 5.6218 2.7569 0.4116 32 1 5.6639 2.6866 2.1897 33 1 7.7511 4.1452 1.3069 34 1 10.2073 6.4049 1.3379 35 1 3.6612 -2.4904 -0.0867 36 1 5.1058 -1.4500 -0.1423 37 1 3.7099 -1.2202 -2.2007 38 1 3.8193 0.3090 -1.2958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323225019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:51 Heat of formation + Delta-G solvation = -158.875104 kcal Electronic energy + Delta-G solvation = -21004.300800 eV Core-core repulsion = 17652.137295 eV Total energy + Delta-G solvation = -3352.163505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.76196 -40.30919 -39.14323 -36.28562 -35.42587 -34.68536 -33.61283 -33.37155 -29.52662 -28.77926 -26.69230 -25.23076 -23.68165 -22.49255 -21.40887 -20.70672 -20.03104 -18.21897 -17.39123 -17.31674 -17.10487 -16.96892 -16.64000 -16.33847 -15.84549 -15.75097 -15.25209 -14.97890 -14.78360 -14.01378 -13.88510 -13.57105 -13.50715 -13.32476 -13.24960 -12.92299 -12.91356 -12.79580 -12.46303 -12.12001 -12.03883 -11.70927 -11.59571 -11.49389 -10.87018 -10.57943 -10.27858 -10.18312 -10.09336 -8.52934 -6.03313 1.33853 1.42245 1.54581 1.56157 1.88704 2.01321 2.30835 2.85069 3.10101 3.14290 3.54688 3.68546 3.79242 3.97391 4.07179 4.21969 4.28105 4.38874 4.40039 4.43857 4.55659 4.68328 4.72658 4.82128 4.85783 4.97949 5.04852 5.07978 5.19063 5.28334 5.34991 5.37832 5.89978 6.29811 6.43308 6.50929 7.01654 7.14368 7.42204 7.91829 8.64153 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042862 B = 0.003512 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.099671 B = 7971.623413 C = 8183.384250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.053 0.947 4 C -0.122 4.122 5 C -0.108 4.108 6 H 0.128 0.872 7 C 0.512 3.488 8 O -0.573 6.573 9 N -0.706 5.706 10 C 0.121 3.879 11 C 0.433 3.567 12 O -0.623 6.623 13 N -0.560 5.560 14 C -0.337 4.337 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.917 5.917 18 Si 0.997 3.003 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.142 4.142 23 C 0.054 3.946 24 O -0.394 6.394 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.414 0.586 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.280 0.720 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.841 -11.603 -1.131 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.010 3.990 3 H 0.071 0.929 4 C -0.160 4.160 5 C -0.129 4.129 6 H 0.145 0.855 7 C 0.301 3.699 8 O -0.453 6.453 9 N -0.360 5.360 10 C -0.007 4.007 11 C 0.220 3.780 12 O -0.511 6.511 13 N -0.195 5.195 14 C -0.466 4.466 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.557 5.557 18 Si 0.820 3.180 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.180 4.180 23 C -0.023 4.023 24 O -0.313 6.313 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.252 0.748 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.232 0.768 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.029 -11.494 -1.254 18.180 hybrid contribution 1.320 0.798 0.193 1.555 sum -12.709 -10.696 -1.062 16.645 Atomic orbital electron populations 1.21728 0.91816 1.03247 1.02696 1.22418 0.96161 0.95625 0.84811 0.92874 1.21996 0.92419 1.02723 0.98876 1.21513 0.97745 0.91566 1.02099 0.85467 1.21241 0.81233 0.92672 0.74804 1.90632 1.58091 1.45306 1.51294 1.45782 1.07412 1.08615 1.74205 1.20750 0.90139 0.85885 1.03925 1.20415 0.89614 0.84413 0.83596 1.90473 1.72602 1.30079 1.57913 1.41863 1.06821 1.07543 1.63278 1.19780 0.81994 0.94628 1.50206 0.89505 1.26135 1.05319 0.93922 0.95756 1.69688 1.38503 0.98215 1.49249 0.84809 0.76331 0.78536 0.78300 1.19339 1.19658 1.19652 1.22210 1.02088 1.01302 0.92375 1.22659 0.80925 0.98892 0.99788 1.87866 1.21247 1.78118 1.44114 0.90945 0.90174 0.92450 0.90389 0.88237 0.74794 0.89229 0.88947 0.76777 0.91065 0.87395 0.89581 0.86876 0.95655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.56 71.98 0.69 -1.90 16 2 C 0.07 1.60 2.98 30.63 0.09 1.69 16 3 H 0.05 1.61 5.81 -2.39 -0.01 1.60 16 4 C -0.12 -2.42 4.56 30.69 0.14 -2.28 16 5 C -0.11 -2.23 3.04 -11.42 -0.03 -2.27 16 6 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 7 C 0.51 14.85 5.83 87.66 0.51 15.36 16 8 O -0.57 -19.98 13.85 -3.03 -0.04 -20.02 16 9 N -0.71 -22.04 5.41 -466.80 -2.53 -24.56 16 10 C 0.12 4.33 6.15 85.63 0.53 4.86 16 11 C 0.43 19.62 7.85 87.66 0.69 20.31 16 12 O -0.62 -31.44 15.24 -3.10 -0.05 -31.49 16 13 N -0.56 -27.84 5.29 -306.99 -1.62 -29.47 16 14 C -0.34 -18.39 9.68 84.04 0.81 -17.58 16 15 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 16 C -0.01 -0.55 5.50 84.92 0.47 -0.09 16 17 N -0.92 -48.43 13.05 21.66 0.28 -48.15 16 18 Si 1.00 41.38 29.55 68.60 2.03 43.41 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 C -0.14 -2.60 5.57 30.69 0.17 -2.43 16 23 C 0.05 1.21 6.62 72.01 0.48 1.69 16 24 O -0.39 -9.89 10.41 -148.98 -1.55 -11.44 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.59 8.02 -2.39 -0.02 1.57 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.41 12.59 6.86 -92.70 -0.64 11.95 16 31 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 33 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 34 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.54 7.52 -2.39 -0.02 1.52 16 37 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.03 0.69 7.38 -2.39 -0.02 0.67 16 Total: -1.00 -65.30 313.69 0.78 -64.52 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.28 Total: 39.82 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 4.54 Total: 17.37 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -3.87 Total: -102.18 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -1.64 Total: -62.94 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -65.30 0.78 -64.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323225019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.357 kcal (2) G-P(sol) polarization free energy of solvation -65.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds