Wall clock time and date at job start Mon Mar 30 2020 02:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47986 * 2 1 4 4 C 1.53097 * 109.47552 * 120.03290 * 2 1 3 5 5 C 1.53182 * 109.15759 * 177.59561 * 4 2 1 6 6 H 1.08993 * 109.62129 * 62.92906 * 5 4 2 7 7 C 1.50706 * 109.53777 * 183.15111 * 5 4 2 8 8 O 1.21274 * 120.00042 * 359.27599 * 7 5 4 9 9 N 1.34777 * 119.99766 * 179.55135 * 7 5 4 10 10 C 1.46496 * 120.00266 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.47317 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00343 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99614 * 180.02562 * 11 10 9 14 14 C 1.37097 * 119.99518 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00466 * 359.97438 * 14 13 11 16 16 C 1.38959 * 120.00015 * 179.97438 * 14 13 11 17 17 N 1.31409 * 119.99541 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99946 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46921 * 90.00432 * 18 16 14 20 20 H 1.48500 * 109.46784 * 210.00026 * 18 16 14 21 21 H 1.48489 * 109.47326 * 330.00229 * 18 16 14 22 22 C 1.53174 * 109.03560 * 303.01352 * 5 4 2 23 23 C 1.53089 * 109.16323 * 56.98691 * 22 5 4 24 24 O 1.42902 * 109.48117 * 239.97347 * 2 1 3 25 25 H 1.09004 * 109.47056 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47562 * 300.02769 * 1 2 3 27 27 H 1.09006 * 109.46733 * 60.02995 * 1 2 3 28 28 H 1.08992 * 109.52423 * 57.68664 * 4 2 1 29 29 H 1.08994 * 109.51997 * 297.49416 * 4 2 1 30 30 H 0.96999 * 120.00043 * 0.02562 * 9 7 5 31 31 H 1.09004 * 109.47212 * 300.00463 * 10 9 7 32 32 H 1.09000 * 109.46684 * 60.00307 * 10 9 7 33 33 H 0.96996 * 120.00269 * 359.97438 * 13 11 10 34 34 H 0.97002 * 119.99686 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.52070 * 176.89072 * 22 5 4 36 36 H 1.09000 * 109.52711 * 297.07827 * 22 5 4 37 37 H 1.09001 * 109.48254 * 62.37019 * 23 22 5 38 38 H 1.09004 * 109.48444 * 182.40692 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7224 1.2496 5 6 3.5711 -0.7709 1.2122 6 1 3.9702 0.2429 1.2417 7 6 4.0798 -1.5477 2.3992 8 8 3.2974 -2.0059 3.2046 9 7 5.4046 -1.7285 2.5686 10 6 5.8993 -2.4832 3.7227 11 6 7.4047 -2.5389 3.6787 12 8 8.0053 -2.0007 2.7727 13 7 8.0835 -3.1867 4.6461 14 6 9.4530 -3.2369 4.6064 15 1 9.9878 -2.7578 3.7997 16 6 10.1530 -3.9044 5.6041 17 7 9.5023 -4.4870 6.5859 18 14 12.0189 -3.9734 5.5495 19 1 12.5789 -2.8085 6.2807 20 1 12.4866 -5.2300 6.1879 21 1 12.4745 -3.9366 4.1367 22 6 4.0176 -1.4601 -0.0808 23 6 3.4308 -0.7093 -1.2789 24 8 2.0066 -0.6741 -1.1664 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5142 0.8896 27 1 -0.3633 0.5134 -0.8903 28 1 1.6442 -1.7375 1.2709 29 1 1.7148 -0.1845 2.1398 30 1 6.0306 -1.3583 1.9267 31 1 5.5810 -1.9914 4.6419 32 1 5.4969 -3.4958 3.6941 33 1 7.6032 -3.6168 5.3708 34 1 9.9909 -4.9533 7.2822 35 1 5.1059 -1.4498 -0.1419 36 1 3.6614 -2.4902 -0.0864 37 1 3.8193 0.3090 -1.2956 38 1 3.7101 -1.2202 -2.2004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323225021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:55 Heat of formation + Delta-G solvation = -140.274589 kcal Electronic energy + Delta-G solvation = -20542.992586 eV Core-core repulsion = 17191.635660 eV Total energy + Delta-G solvation = -3351.356926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36749 -38.91827 -38.03657 -34.51975 -33.89421 -33.63908 -32.90107 -31.40908 -28.30681 -27.74165 -25.15828 -24.03993 -22.82007 -20.90152 -19.90374 -19.53602 -18.14585 -17.24840 -16.51187 -16.13281 -15.62120 -15.55695 -15.23090 -14.80342 -14.57857 -14.25325 -14.13192 -13.86266 -13.37882 -13.02261 -12.77623 -12.53359 -12.24562 -12.07026 -11.93749 -11.66461 -11.49871 -11.33267 -11.14990 -10.91830 -10.60874 -10.48464 -10.34745 -9.96093 -9.66802 -9.46856 -8.83232 -8.67045 -8.13540 -6.54536 -3.96696 2.76506 3.09399 3.19558 3.23525 3.32096 3.57807 3.70442 4.08583 4.44247 4.59146 4.61384 4.72185 4.84234 4.95034 5.01195 5.13907 5.20079 5.27249 5.33938 5.43784 5.47299 5.60054 5.70954 5.79737 5.88195 5.91742 5.93378 5.97199 6.03783 6.14574 6.64144 7.03925 7.43043 7.76477 7.88713 8.38919 8.43213 9.01344 9.35847 9.83528 10.62338 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049377 B = 0.003165 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.929037 B = 8844.417069 C = 9280.025121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.058 0.942 4 C -0.128 4.128 5 C -0.108 4.108 6 H 0.098 0.902 7 C 0.516 3.484 8 O -0.548 6.548 9 N -0.706 5.706 10 C 0.108 3.892 11 C 0.428 3.572 12 O -0.598 6.598 13 N -0.548 5.548 14 C -0.306 4.306 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.894 5.894 18 Si 0.934 3.066 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.150 4.150 23 C 0.065 3.935 24 O -0.381 6.381 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.410 0.590 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.396 0.604 34 H 0.275 0.725 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.287 7.463 -10.844 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.076 0.924 4 C -0.166 4.166 5 C -0.129 4.129 6 H 0.116 0.884 7 C 0.302 3.698 8 O -0.426 6.426 9 N -0.360 5.360 10 C -0.020 4.020 11 C 0.213 3.787 12 O -0.485 6.485 13 N -0.183 5.183 14 C -0.435 4.435 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.188 4.188 23 C -0.012 4.012 24 O -0.301 6.301 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.248 0.752 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.461 7.273 -10.806 18.732 hybrid contribution 1.293 -0.125 0.572 1.419 sum -12.168 7.148 -10.234 17.433 Atomic orbital electron populations 1.21753 0.92925 1.03108 1.02341 1.22140 0.95234 0.94909 0.84948 0.92398 1.22050 0.93050 1.03144 0.98369 1.21358 0.97588 1.00375 0.93608 0.88421 1.20457 0.82095 0.80473 0.86813 1.90680 1.55830 1.50593 1.45470 1.45736 1.07088 1.55390 1.27779 1.20960 0.94014 0.97416 0.89601 1.19738 0.88057 0.85415 0.85472 1.90490 1.69576 1.51244 1.37188 1.41802 1.07483 1.46393 1.22630 1.19732 0.80979 1.32839 1.09970 0.87664 1.25338 1.01042 0.96147 0.95186 1.69615 1.36930 1.34623 1.12271 0.85804 0.81704 0.77719 0.78764 1.20242 1.20766 1.19297 1.22230 1.01991 1.00989 0.93589 1.22552 0.80928 0.99605 0.98095 1.87930 1.20995 1.78062 1.43065 0.91679 0.90985 0.91908 0.90068 0.90162 0.75162 0.89885 0.89882 0.77028 0.91548 0.89794 0.90291 0.92914 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.56 37.16 0.36 -0.80 16 2 C 0.09 0.81 3.26 -26.68 -0.09 0.72 16 3 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -1.41 4.01 -26.59 -0.11 -1.52 16 5 C -0.11 -1.24 2.62 -91.58 -0.24 -1.48 16 6 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 7 C 0.52 7.95 7.16 -10.98 -0.08 7.87 16 8 O -0.55 -10.15 15.97 5.56 0.09 -10.07 16 9 N -0.71 -11.52 5.43 -61.47 -0.33 -11.85 16 10 C 0.11 1.98 6.15 -5.20 -0.03 1.95 16 11 C 0.43 9.72 7.85 -10.99 -0.09 9.63 16 12 O -0.60 -15.11 15.24 5.55 0.08 -15.02 16 13 N -0.55 -13.53 5.29 -10.96 -0.06 -13.59 16 14 C -0.31 -8.26 9.68 -14.93 -0.14 -8.41 16 15 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 17 N -0.89 -23.80 13.05 55.50 0.72 -23.07 16 18 Si 0.93 20.41 29.55 -169.99 -5.02 15.38 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 C -0.15 -1.55 5.29 -26.60 -0.14 -1.69 16 23 C 0.06 0.59 6.84 37.20 0.25 0.84 16 24 O -0.38 -4.15 10.41 -35.23 -0.37 -4.52 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.02 8.03 -51.93 -0.42 0.61 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.41 6.51 6.92 -40.82 -0.28 6.22 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.08 0.82 7.67 -51.93 -0.40 0.42 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -31.17 319.76 -6.05 -37.22 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.58 Total: 13.01 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.40 Total: 7.70 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.33 Total: -48.52 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.19 Total: -29.61 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.17 -6.05 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323225021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.055 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds