Wall clock time and date at job start Mon Mar 30 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47986 * 2 1 4 4 C 1.53097 * 109.47552 * 120.03290 * 2 1 3 5 5 C 1.53182 * 109.15759 * 177.59561 * 4 2 1 6 6 H 1.08993 * 109.62129 * 62.92906 * 5 4 2 7 7 C 1.50706 * 109.53777 * 183.15111 * 5 4 2 8 8 O 1.21274 * 120.00042 * 359.27599 * 7 5 4 9 9 N 1.34777 * 119.99766 * 179.55135 * 7 5 4 10 10 C 1.46496 * 120.00266 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.47317 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00343 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99614 * 180.02562 * 11 10 9 14 14 C 1.37097 * 119.99518 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00466 * 359.97438 * 14 13 11 16 16 C 1.38959 * 120.00015 * 179.97438 * 14 13 11 17 17 N 1.31409 * 119.99541 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99946 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46921 * 90.00432 * 18 16 14 20 20 H 1.48500 * 109.46784 * 210.00026 * 18 16 14 21 21 H 1.48489 * 109.47326 * 330.00229 * 18 16 14 22 22 C 1.53174 * 109.03560 * 303.01352 * 5 4 2 23 23 C 1.53089 * 109.16323 * 56.98691 * 22 5 4 24 24 O 1.42902 * 109.48117 * 239.97347 * 2 1 3 25 25 H 1.09004 * 109.47056 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47562 * 300.02769 * 1 2 3 27 27 H 1.09006 * 109.46733 * 60.02995 * 1 2 3 28 28 H 1.08992 * 109.52423 * 57.68664 * 4 2 1 29 29 H 1.08994 * 109.51997 * 297.49416 * 4 2 1 30 30 H 0.96999 * 120.00043 * 0.02562 * 9 7 5 31 31 H 1.09004 * 109.47212 * 300.00463 * 10 9 7 32 32 H 1.09000 * 109.46684 * 60.00307 * 10 9 7 33 33 H 0.96996 * 120.00269 * 359.97438 * 13 11 10 34 34 H 0.97002 * 119.99686 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.52070 * 176.89072 * 22 5 4 36 36 H 1.09000 * 109.52711 * 297.07827 * 22 5 4 37 37 H 1.09001 * 109.48254 * 62.37019 * 23 22 5 38 38 H 1.09004 * 109.48444 * 182.40692 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7224 1.2496 5 6 3.5711 -0.7709 1.2122 6 1 3.9702 0.2429 1.2417 7 6 4.0798 -1.5477 2.3992 8 8 3.2974 -2.0059 3.2046 9 7 5.4046 -1.7285 2.5686 10 6 5.8993 -2.4832 3.7227 11 6 7.4047 -2.5389 3.6787 12 8 8.0053 -2.0007 2.7727 13 7 8.0835 -3.1867 4.6461 14 6 9.4530 -3.2369 4.6064 15 1 9.9878 -2.7578 3.7997 16 6 10.1530 -3.9044 5.6041 17 7 9.5023 -4.4870 6.5859 18 14 12.0189 -3.9734 5.5495 19 1 12.5789 -2.8085 6.2807 20 1 12.4866 -5.2300 6.1879 21 1 12.4745 -3.9366 4.1367 22 6 4.0176 -1.4601 -0.0808 23 6 3.4308 -0.7093 -1.2789 24 8 2.0066 -0.6741 -1.1664 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5142 0.8896 27 1 -0.3633 0.5134 -0.8903 28 1 1.6442 -1.7375 1.2709 29 1 1.7148 -0.1845 2.1398 30 1 6.0306 -1.3583 1.9267 31 1 5.5810 -1.9914 4.6419 32 1 5.4969 -3.4958 3.6941 33 1 7.6032 -3.6168 5.3708 34 1 9.9909 -4.9533 7.2822 35 1 5.1059 -1.4498 -0.1419 36 1 3.6614 -2.4902 -0.0864 37 1 3.8193 0.3090 -1.2956 38 1 3.7101 -1.2202 -2.2004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323225021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:54 Heat of formation + Delta-G solvation = -163.369448 kcal Electronic energy + Delta-G solvation = -20543.994054 eV Core-core repulsion = 17191.635660 eV Total energy + Delta-G solvation = -3352.358395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48734 -40.31305 -39.48161 -36.28468 -35.38496 -34.69957 -33.66230 -33.38044 -29.61121 -28.75023 -26.75145 -25.29362 -23.64597 -21.85088 -21.41339 -20.94018 -20.07659 -18.57868 -17.41896 -17.31042 -17.06901 -16.85331 -16.61474 -16.25738 -15.85427 -15.72788 -15.32133 -15.12063 -14.70109 -14.25597 -13.93645 -13.56881 -13.55249 -13.47590 -13.14693 -12.91725 -12.81100 -12.47476 -12.39183 -12.13673 -12.08613 -11.73278 -11.58591 -11.45823 -10.99264 -10.59528 -10.41621 -10.22944 -10.10405 -8.52864 -6.03262 1.35189 1.42106 1.53026 1.54790 1.88713 1.99041 2.30461 2.87079 3.09856 3.14340 3.53410 3.63369 3.75134 3.94584 4.14407 4.22314 4.24165 4.36807 4.38729 4.47161 4.49583 4.56158 4.72571 4.77097 4.85110 5.02141 5.04730 5.09612 5.21614 5.28558 5.35042 5.36957 5.89711 6.32210 6.42936 6.50037 7.01401 7.12382 7.42039 7.91691 8.64097 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049377 B = 0.003165 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.929037 B = 8844.417069 C = 9280.025121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.125 4.125 5 C -0.102 4.102 6 H 0.122 0.878 7 C 0.516 3.484 8 O -0.581 6.581 9 N -0.706 5.706 10 C 0.119 3.881 11 C 0.433 3.567 12 O -0.623 6.623 13 N -0.560 5.560 14 C -0.337 4.337 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.917 5.917 18 Si 0.997 3.003 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.147 4.147 23 C 0.065 3.935 24 O -0.398 6.398 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.414 0.586 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.398 0.602 34 H 0.280 0.720 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 8.415 -11.573 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.094 0.906 4 C -0.163 4.163 5 C -0.123 4.123 6 H 0.140 0.860 7 C 0.304 3.696 8 O -0.461 6.461 9 N -0.360 5.360 10 C -0.009 4.009 11 C 0.220 3.780 12 O -0.511 6.511 13 N -0.195 5.195 14 C -0.467 4.467 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.557 5.557 18 Si 0.820 3.180 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.185 4.185 23 C -0.012 4.012 24 O -0.318 6.318 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.253 0.747 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.232 0.768 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.456 8.230 -11.544 19.546 hybrid contribution 1.228 -0.415 0.782 1.514 sum -12.228 7.816 -10.762 18.067 Atomic orbital electron populations 1.21779 0.92047 1.02828 1.03429 1.22237 0.96019 0.95280 0.83635 0.90607 1.22029 0.92614 1.02172 0.99474 1.21422 0.97859 1.00919 0.92115 0.85996 1.21164 0.81189 0.79878 0.87353 1.90666 1.56418 1.52006 1.46963 1.45759 1.07668 1.55306 1.27223 1.20776 0.90572 0.98473 0.91037 1.20393 0.89733 0.83667 0.84201 1.90467 1.70828 1.51856 1.37931 1.41860 1.07078 1.47214 1.23344 1.19748 0.82193 1.34320 1.10407 0.89478 1.26149 1.05339 0.95235 0.94438 1.69682 1.38577 1.34784 1.12639 0.84859 0.76266 0.78155 0.78671 1.19511 1.19689 1.19359 1.22223 1.02416 1.00222 0.93619 1.22679 0.80100 1.00621 0.97783 1.87922 1.21999 1.78426 1.43450 0.92672 0.89650 0.91075 0.92264 0.90149 0.74727 0.88911 0.89098 0.76754 0.91045 0.89156 0.91905 0.91015 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.56 71.98 0.69 -1.39 16 2 C 0.09 1.46 3.26 30.63 0.10 1.56 16 3 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 4 C -0.12 -2.61 4.01 30.69 0.12 -2.49 16 5 C -0.10 -2.18 2.62 -11.42 -0.03 -2.21 16 6 H 0.12 2.06 8.14 -2.39 -0.02 2.05 16 7 C 0.52 15.47 7.16 87.66 0.63 16.10 16 8 O -0.58 -21.33 15.97 -3.01 -0.05 -21.38 16 9 N -0.71 -22.41 5.43 -466.79 -2.54 -24.95 16 10 C 0.12 4.32 6.15 85.63 0.53 4.85 16 11 C 0.43 19.74 7.85 87.66 0.69 20.42 16 12 O -0.62 -31.54 15.24 -3.06 -0.05 -31.59 16 13 N -0.56 -27.93 5.29 -306.98 -1.62 -29.56 16 14 C -0.34 -18.45 9.68 84.04 0.81 -17.63 16 15 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 16 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 17 N -0.92 -48.57 13.05 21.67 0.28 -48.29 16 18 Si 1.00 41.40 29.55 68.60 2.03 43.43 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 C -0.15 -2.80 5.29 30.68 0.16 -2.64 16 23 C 0.06 1.02 6.84 72.01 0.49 1.51 16 24 O -0.40 -7.91 10.41 -148.98 -1.55 -9.46 16 25 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.06 1.49 8.03 -2.39 -0.02 1.47 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.41 12.71 6.92 -92.71 -0.64 12.07 16 31 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 32 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 34 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.09 1.61 7.67 -2.39 -0.02 1.59 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -66.17 319.76 0.87 -65.30 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.30 Total: 38.52 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 4.66 Total: 17.97 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.88 Total: -102.80 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -1.65 Total: -62.43 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -66.17 0.87 -65.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323225021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.070 kcal (2) G-P(sol) polarization free energy of solvation -66.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds