Wall clock time and date at job start Mon Mar 30 2020 00:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48500 * 109.46830 * 269.99430 * 3 2 1 5 5 H 1.48498 * 109.47267 * 29.99288 * 3 2 1 6 6 H 1.48499 * 109.47111 * 149.99389 * 3 2 1 7 7 C 1.37876 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00118 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00199 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47658 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47561 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47149 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99870 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99856 * 179.97438 * 12 11 10 15 15 C 1.47263 * 120.95916 * 0.02921 * 14 12 11 16 16 C 1.53300 * 108.32670 * 129.46524 * 15 14 12 17 17 O 1.42961 * 109.26618 * 52.28303 * 16 15 14 18 18 C 1.42966 * 114.16677 * 297.39866 * 17 16 15 19 19 H 1.08998 * 109.50874 * 302.65505 * 18 17 16 20 20 C 1.50702 * 109.51023 * 182.50369 * 18 17 16 21 21 N 1.34780 * 119.99291 * 174.99537 * 20 18 17 22 22 O 1.21275 * 120.00419 * 354.99465 * 20 18 17 23 23 C 1.47152 * 120.97950 * 180.02562 * 14 12 11 24 24 H 0.96994 * 120.00368 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47167 * 59.99699 * 9 7 2 26 26 H 1.09003 * 109.46912 * 300.00175 * 9 7 2 27 27 H 1.09004 * 109.46505 * 59.99611 * 10 9 7 28 28 H 1.08999 * 109.46782 * 300.00394 * 10 9 7 29 29 H 1.09002 * 109.46989 * 59.99947 * 11 10 9 30 30 H 1.09000 * 109.46909 * 299.99932 * 11 10 9 31 31 H 1.08995 * 109.74687 * 9.74070 * 15 14 12 32 32 H 1.09004 * 109.67476 * 249.14721 * 15 14 12 33 33 H 1.09002 * 109.51290 * 292.33299 * 16 15 14 34 34 H 1.08997 * 109.51158 * 172.23397 * 16 15 14 35 35 H 0.96994 * 120.00162 * 0.02562 * 21 20 18 36 36 H 0.97003 * 119.99202 * 179.97438 * 21 20 18 37 37 H 1.09000 * 109.68168 * 110.83868 * 23 14 12 38 38 H 1.08993 * 109.68289 * 350.28257 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6365 0.0022 12 6 6.0539 -4.0573 0.0040 13 8 5.2658 -4.9791 0.0047 14 7 7.3790 -4.3035 0.0038 15 6 8.3545 -3.2003 0.0024 16 6 9.3671 -3.4510 1.1257 17 8 9.9004 -4.7709 0.9943 18 6 8.9285 -5.8108 1.1286 19 1 8.4310 -5.7215 2.0943 20 6 9.6099 -7.1517 1.0342 21 7 8.9036 -8.2819 1.2346 22 8 10.7937 -7.2137 0.7780 23 6 7.8932 -5.6823 0.0049 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8889 27 1 3.6585 -3.1509 -0.8875 28 1 3.6579 -3.1497 0.8924 29 1 5.9149 -2.1219 0.8918 30 1 5.9148 -2.1234 -0.8882 31 1 7.8411 -2.2546 0.1753 32 1 8.8709 -3.1683 -0.9570 33 1 8.8712 -3.3531 2.0915 34 1 10.1755 -2.7231 1.0562 35 1 7.9568 -8.2323 1.4392 36 1 9.3421 -9.1450 1.1735 37 1 8.3632 -5.8996 -0.9542 38 1 7.0738 -6.3795 0.1791 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326782704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:59 Heat of formation + Delta-G solvation = -123.426337 kcal Electronic energy + Delta-G solvation = -20698.034679 eV Core-core repulsion = 17347.408348 eV Total energy + Delta-G solvation = -3350.626331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88522 -39.56088 -38.20740 -35.01554 -34.48089 -34.16485 -32.31586 -31.72956 -29.00435 -27.92459 -25.43761 -23.74531 -22.74712 -20.95602 -20.25721 -19.24207 -18.16663 -17.56048 -17.02042 -16.74328 -16.30622 -16.20172 -15.81493 -15.48209 -14.95554 -14.42864 -14.30928 -14.21221 -13.79558 -13.18366 -13.08297 -12.68206 -12.60131 -12.09935 -11.92582 -11.70886 -11.29386 -11.01334 -10.83591 -10.59757 -10.30873 -10.12644 -10.07512 -9.89472 -9.75197 -9.52584 -9.18388 -8.85420 -8.54699 -6.04203 -4.02395 2.10695 2.57892 2.63850 2.66616 3.28626 3.35956 3.37963 3.69072 4.19156 4.37491 4.41155 4.43625 4.57177 4.63724 4.77419 4.91375 5.11477 5.25318 5.28945 5.32396 5.42408 5.46362 5.49338 5.96228 6.10433 6.29074 6.48144 6.54615 6.61269 6.85418 6.87984 7.13906 7.31860 7.39685 7.78464 7.81362 8.12350 8.55117 9.02237 9.57611 11.09492 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039410 B = 0.003418 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.302879 B = 8188.794947 C = 8745.352803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.140 4.140 12 C 0.519 3.481 13 O -0.530 6.530 14 N -0.625 5.625 15 C 0.070 3.930 16 C 0.046 3.954 17 O -0.352 6.352 18 C 0.059 3.941 19 H 0.091 0.909 20 C 0.529 3.471 21 N -0.850 5.850 22 O -0.519 6.519 23 C 0.090 3.910 24 H 0.263 0.737 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.405 0.595 36 H 0.407 0.593 37 H 0.079 0.921 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.455 -10.464 2.833 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.180 4.180 12 C 0.309 3.691 13 O -0.405 6.405 14 N -0.362 5.362 15 C -0.053 4.053 16 C -0.031 4.031 17 O -0.270 6.270 18 C -0.003 4.003 19 H 0.109 0.891 20 C 0.312 3.688 21 N -0.416 5.416 22 O -0.393 6.393 23 C -0.034 4.034 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.234 0.766 36 H 0.239 0.761 37 H 0.097 0.903 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.821 -10.701 2.619 23.556 hybrid contribution -0.166 0.724 0.104 0.750 sum 20.656 -9.977 2.723 23.100 Atomic orbital electron populations 1.69915 1.06328 1.26855 1.51202 1.25054 0.94743 0.99172 0.94658 0.86759 0.80292 0.83634 0.78438 1.20326 1.21427 1.19055 1.21148 0.89486 0.94555 1.50616 0.90939 1.19602 0.97381 0.92029 0.96115 1.21290 0.88956 0.99722 1.02604 1.21919 1.00823 0.91554 1.03698 1.21281 0.80448 0.92954 0.74398 1.90688 1.54345 1.46768 1.48682 1.48286 1.06161 1.06006 1.75733 1.22531 0.91242 0.91128 1.00406 1.23124 0.97966 0.84284 0.97774 1.88081 1.32014 1.13533 1.93330 1.22295 0.90040 0.87781 1.00234 0.89105 1.19952 0.87030 0.85492 0.76349 1.43750 1.14363 1.08464 1.75045 1.90783 1.15270 1.87168 1.46076 1.22053 0.97085 0.85787 0.98447 0.92745 0.96664 0.97072 0.92027 0.92022 0.89220 0.89133 0.87712 0.90113 0.92049 0.86742 0.76608 0.76077 0.90277 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.09 -1.73 4.44 -26.73 -0.12 -1.85 16 11 C -0.14 -2.01 4.07 -27.88 -0.11 -2.12 16 12 C 0.52 7.46 7.71 -10.99 -0.08 7.38 16 13 O -0.53 -9.50 15.45 5.56 0.09 -9.42 16 14 N -0.63 -6.89 3.02 -172.16 -0.52 -7.41 16 15 C 0.07 0.57 6.55 -3.47 -0.02 0.55 16 16 C 0.05 0.35 6.98 37.31 0.26 0.61 16 17 O -0.35 -3.82 9.92 -55.06 -0.55 -4.37 16 18 C 0.06 0.55 3.19 -27.71 -0.09 0.46 16 19 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 20 C 0.53 5.26 7.45 -10.98 -0.08 5.18 16 21 N -0.85 -4.87 8.84 31.22 0.28 -4.59 16 22 O -0.52 -7.48 17.35 -14.27 -0.25 -7.73 16 23 C 0.09 0.89 5.89 -3.51 -0.02 0.87 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.34 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 27 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 28 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 29 H 0.09 1.10 7.66 -51.93 -0.40 0.70 16 30 H 0.09 1.14 8.02 -51.93 -0.42 0.73 16 31 H 0.10 0.72 6.06 -51.93 -0.31 0.41 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 1.43 8.83 -40.82 -0.36 1.07 16 36 H 0.41 1.83 8.93 -40.82 -0.36 1.47 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.11 1.04 7.08 -51.93 -0.37 0.67 16 LS Contribution 316.76 15.07 4.77 4.77 Total: -1.00 -37.27 316.76 -6.42 -43.68 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.53 Total: -1.61 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.81 Total: -2.77 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.53 Total: -39.21 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.71 Total: -21.51 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -37.27 -6.42 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326782704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.745 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds