Wall clock time and date at job start Mon Mar 30 2020 00:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48500 * 109.46830 * 269.99430 * 3 2 1 5 5 H 1.48498 * 109.47267 * 29.99288 * 3 2 1 6 6 H 1.48499 * 109.47111 * 149.99389 * 3 2 1 7 7 C 1.37876 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00118 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00199 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47658 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47561 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47149 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99870 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99856 * 179.97438 * 12 11 10 15 15 C 1.47263 * 120.95916 * 0.02921 * 14 12 11 16 16 C 1.53300 * 108.32670 * 129.46524 * 15 14 12 17 17 O 1.42961 * 109.26618 * 52.28303 * 16 15 14 18 18 C 1.42966 * 114.16677 * 297.39866 * 17 16 15 19 19 H 1.08998 * 109.50874 * 302.65505 * 18 17 16 20 20 C 1.50702 * 109.51023 * 182.50369 * 18 17 16 21 21 N 1.34780 * 119.99291 * 174.99537 * 20 18 17 22 22 O 1.21275 * 120.00419 * 354.99465 * 20 18 17 23 23 C 1.47152 * 120.97950 * 180.02562 * 14 12 11 24 24 H 0.96994 * 120.00368 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47167 * 59.99699 * 9 7 2 26 26 H 1.09003 * 109.46912 * 300.00175 * 9 7 2 27 27 H 1.09004 * 109.46505 * 59.99611 * 10 9 7 28 28 H 1.08999 * 109.46782 * 300.00394 * 10 9 7 29 29 H 1.09002 * 109.46989 * 59.99947 * 11 10 9 30 30 H 1.09000 * 109.46909 * 299.99932 * 11 10 9 31 31 H 1.08995 * 109.74687 * 9.74070 * 15 14 12 32 32 H 1.09004 * 109.67476 * 249.14721 * 15 14 12 33 33 H 1.09002 * 109.51290 * 292.33299 * 16 15 14 34 34 H 1.08997 * 109.51158 * 172.23397 * 16 15 14 35 35 H 0.96994 * 120.00162 * 0.02562 * 21 20 18 36 36 H 0.97003 * 119.99202 * 179.97438 * 21 20 18 37 37 H 1.09000 * 109.68168 * 110.83868 * 23 14 12 38 38 H 1.08993 * 109.68289 * 350.28257 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6365 0.0022 12 6 6.0539 -4.0573 0.0040 13 8 5.2658 -4.9791 0.0047 14 7 7.3790 -4.3035 0.0038 15 6 8.3545 -3.2003 0.0024 16 6 9.3671 -3.4510 1.1257 17 8 9.9004 -4.7709 0.9943 18 6 8.9285 -5.8108 1.1286 19 1 8.4310 -5.7215 2.0943 20 6 9.6099 -7.1517 1.0342 21 7 8.9036 -8.2819 1.2346 22 8 10.7937 -7.2137 0.7780 23 6 7.8932 -5.6823 0.0049 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8889 27 1 3.6585 -3.1509 -0.8875 28 1 3.6579 -3.1497 0.8924 29 1 5.9149 -2.1219 0.8918 30 1 5.9148 -2.1234 -0.8882 31 1 7.8411 -2.2546 0.1753 32 1 8.8709 -3.1683 -0.9570 33 1 8.8712 -3.3531 2.0915 34 1 10.1755 -2.7231 1.0562 35 1 7.9568 -8.2323 1.4392 36 1 9.3421 -9.1450 1.1735 37 1 8.3632 -5.8996 -0.9542 38 1 7.0738 -6.3795 0.1791 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326782704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:58 Heat of formation + Delta-G solvation = -153.417361 kcal Electronic energy + Delta-G solvation = -20699.335187 eV Core-core repulsion = 17347.408348 eV Total energy + Delta-G solvation = -3351.926840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72443 -40.50527 -39.06792 -36.18914 -35.89271 -34.93859 -34.14273 -32.59757 -30.43125 -28.94148 -26.53806 -25.02804 -23.72431 -21.99862 -21.61599 -20.23012 -18.97170 -18.79730 -18.30121 -17.88574 -17.22554 -17.01314 -16.72233 -16.47589 -16.13288 -15.69225 -15.42514 -15.24027 -14.84895 -14.68493 -14.31559 -13.92787 -13.82834 -13.28563 -13.21812 -12.74695 -12.59670 -12.46423 -11.95231 -11.76525 -11.68965 -11.49134 -11.39840 -11.28352 -11.13640 -10.79371 -10.75005 -10.73135 -9.71792 -8.25888 -6.31522 1.31835 1.40747 1.44043 1.55869 1.56219 1.80129 1.96417 2.40930 3.05635 3.09640 3.43946 3.57479 3.73484 3.84855 3.96567 4.10327 4.18044 4.25844 4.29985 4.36294 4.55504 4.68233 4.82789 4.90724 4.92240 4.96041 5.06191 5.27918 5.58098 5.62531 5.69907 5.72865 5.94049 6.20601 6.30278 6.33249 6.77801 7.07267 7.17949 7.33054 8.91804 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039410 B = 0.003418 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.302879 B = 8188.794947 C = 8745.352803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.004 4.004 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.232 1.232 7 C -0.539 4.539 8 H 0.019 0.981 9 C -0.009 4.009 10 C -0.081 4.081 11 C -0.130 4.130 12 C 0.519 3.481 13 O -0.577 6.577 14 N -0.617 5.617 15 C 0.064 3.936 16 C 0.043 3.957 17 O -0.376 6.376 18 C 0.065 3.935 19 H 0.106 0.894 20 C 0.529 3.471 21 N -0.828 5.828 22 O -0.570 6.570 23 C 0.091 3.909 24 H 0.266 0.734 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.418 0.582 36 H 0.416 0.584 37 H 0.078 0.922 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.166 -8.691 3.204 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.155 1.155 7 C -0.577 4.577 8 H 0.038 0.962 9 C -0.047 4.047 10 C -0.119 4.119 11 C -0.170 4.170 12 C 0.310 3.690 13 O -0.456 6.456 14 N -0.351 5.351 15 C -0.058 4.058 16 C -0.033 4.033 17 O -0.294 6.294 18 C 0.003 3.997 19 H 0.124 0.876 20 C 0.312 3.688 21 N -0.394 5.394 22 O -0.448 6.448 23 C -0.033 4.033 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.249 0.751 36 H 0.249 0.751 37 H 0.096 0.904 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 23.553 -8.962 3.002 25.379 hybrid contribution -1.094 0.058 -0.011 1.096 sum 22.459 -8.904 2.990 24.344 Atomic orbital electron populations 1.70105 1.08761 1.28264 1.52813 1.26206 0.95715 1.04170 0.93924 0.85505 0.79805 0.77038 0.79330 1.19064 1.21474 1.15461 1.21575 0.92821 0.92782 1.50544 0.96224 1.19548 0.93346 0.94362 0.97404 1.21052 0.93276 0.97160 1.00396 1.21776 0.96363 0.92292 1.06534 1.21236 0.81248 0.92448 0.74105 1.90680 1.55859 1.47900 1.51208 1.48255 1.05541 1.07328 1.74015 1.22831 0.90852 0.90822 1.01256 1.23348 0.98689 0.83416 0.97875 1.88069 1.33081 1.14844 1.93454 1.22277 0.89529 0.87406 1.00520 0.87617 1.20143 0.86473 0.86492 0.75728 1.43613 1.14871 1.07935 1.73003 1.90760 1.17351 1.87856 1.48851 1.22088 0.97104 0.85351 0.98767 0.92562 0.94912 0.95276 0.94583 0.94250 0.86053 0.86435 0.85652 0.89223 0.91246 0.84422 0.75061 0.75134 0.90389 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.00 -0.26 5.47 84.66 0.46 0.21 16 3 Si 0.96 42.64 27.47 68.60 1.88 44.53 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.23 -8.97 6.54 99.48 0.65 -8.32 16 7 C -0.54 -31.52 9.66 25.60 0.25 -31.27 16 8 H 0.02 1.29 7.99 -2.91 -0.02 1.27 16 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 10 C -0.08 -3.13 4.44 30.59 0.14 -3.00 16 11 C -0.13 -3.32 4.07 29.85 0.12 -3.20 16 12 C 0.52 13.95 7.71 87.66 0.68 14.63 16 13 O -0.58 -20.67 15.45 -3.03 -0.05 -20.71 16 14 N -0.62 -12.02 3.02 -816.99 -2.47 -14.49 16 15 C 0.06 0.80 6.55 86.33 0.57 1.37 16 16 C 0.04 0.52 6.98 72.08 0.50 1.02 16 17 O -0.38 -7.37 9.92 -130.02 -1.29 -8.67 16 18 C 0.06 1.11 3.19 29.96 0.10 1.20 16 19 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 20 C 0.53 9.98 7.45 87.66 0.65 10.63 16 21 N -0.83 -8.40 8.84 -173.53 -1.53 -9.94 16 22 O -0.57 -16.29 17.35 15.95 0.28 -16.02 16 23 C 0.09 1.65 5.89 86.37 0.51 2.16 16 24 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 25 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 26 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 27 H 0.04 1.54 8.10 -2.38 -0.02 1.52 16 28 H 0.04 1.66 8.10 -2.39 -0.02 1.65 16 29 H 0.12 2.36 7.66 -2.39 -0.02 2.35 16 30 H 0.12 2.41 8.02 -2.39 -0.02 2.39 16 31 H 0.13 1.07 6.06 -2.39 -0.01 1.06 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.42 2.27 8.83 -92.71 -0.82 1.45 16 36 H 0.42 3.21 8.93 -92.71 -0.83 2.39 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.11 1.95 7.08 -2.39 -0.02 1.93 16 Total: -1.00 -85.09 316.76 0.60 -84.50 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -0.62 Total: 8.09 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.09 Total: -6.54 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.70 Total: -85.18 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -1.06 Total: -45.40 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.53 kcal Total: -85.09 0.60 -84.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326782704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.921 kcal (2) G-P(sol) polarization free energy of solvation -85.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds