Wall clock time and date at job start Mon Mar 30 2020 01:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47049 * 2 1 4 4 H 1.08999 * 109.47556 * 304.80672 * 3 2 1 5 5 N 1.46503 * 109.46608 * 64.80769 * 3 2 1 6 6 C 1.34773 * 120.00056 * 274.99523 * 5 3 2 7 7 C 1.50705 * 120.00331 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99941 * 0.02562 * 6 5 3 9 9 C 1.50704 * 109.47148 * 184.80392 * 3 2 1 10 10 O 1.21278 * 119.99946 * 267.55878 * 9 3 2 11 11 N 1.34777 * 119.99747 * 87.55247 * 9 3 2 12 12 C 1.47062 * 136.05274 * 184.66560 * 11 9 3 13 13 C 1.53241 * 88.08281 * 207.20738 * 12 11 9 14 14 O 1.42902 * 114.19293 * 87.72870 * 13 12 11 15 15 C 1.50695 * 114.32877 * 220.47207 * 13 12 11 16 16 H 1.08000 * 120.00182 * 93.76027 * 15 13 12 17 17 C 1.37872 * 120.00125 * 273.76015 * 15 13 12 18 18 N 1.31514 * 120.00297 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00105 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46988 * 60.00114 * 19 17 15 21 21 H 1.48509 * 109.47313 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47468 * 299.99901 * 19 17 15 23 23 C 1.47065 * 136.05771 * 5.04836 * 11 9 3 24 24 H 1.09003 * 109.47056 * 300.00142 * 1 2 3 25 25 H 1.08999 * 109.47518 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47183 * 59.99119 * 1 2 3 27 27 H 1.08993 * 109.47135 * 120.00286 * 2 1 3 28 28 H 1.08997 * 109.46949 * 240.00560 * 2 1 3 29 29 H 0.97001 * 120.00296 * 95.00024 * 5 3 2 30 30 H 1.09004 * 109.46668 * 0.02562 * 7 6 5 31 31 H 1.08998 * 109.47073 * 119.99968 * 7 6 5 32 32 H 1.09004 * 109.46925 * 240.00136 * 7 6 5 33 33 H 1.08994 * 113.47070 * 321.93980 * 12 11 9 34 34 H 1.09004 * 113.46566 * 92.38803 * 12 11 9 35 35 H 0.96703 * 113.99910 * 86.30726 * 14 13 12 36 36 H 0.96996 * 120.00501 * 179.97438 * 18 17 15 37 37 H 1.09006 * 113.46172 * 267.61606 * 23 11 9 38 38 H 1.08991 * 113.47179 * 37.99497 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6081 1.9807 -0.8438 5 7 1.6484 2.0989 1.2499 6 6 0.4307 2.6659 1.3605 7 6 0.0281 3.3415 2.6461 8 8 -0.3410 2.6325 0.4255 9 6 3.5423 1.4443 -0.1190 10 8 4.2297 1.4604 0.8800 11 7 4.1219 1.4278 -1.3357 12 6 5.4958 1.3403 -1.8529 13 6 5.0216 2.1016 -3.0954 14 8 5.0832 3.5238 -2.9697 15 6 5.5963 1.5928 -4.3922 16 1 5.0524 0.8638 -4.9747 17 6 6.8163 2.0578 -4.8351 18 7 7.4784 2.9458 -4.1262 19 14 7.5289 1.4264 -6.4423 20 1 6.5984 1.7443 -7.5551 21 1 8.8398 2.0781 -6.6924 22 1 7.7150 -0.0443 -6.3574 23 6 3.6593 1.4961 -2.7300 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 -0.8899 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 2.2655 2.1254 1.9979 30 1 0.8448 3.2715 3.3646 31 1 -0.1948 4.3905 2.4509 32 1 -0.8568 2.8515 3.0523 33 1 6.2203 1.8944 -1.2563 34 1 5.8156 0.3200 -2.0649 35 1 5.9427 3.9022 -3.2006 36 1 8.3369 3.2727 -4.4376 37 1 3.4850 0.5177 -3.1778 38 1 2.8249 2.1815 -2.8774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329435023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:19 Heat of formation + Delta-G solvation = -89.404007 kcal Electronic energy + Delta-G solvation = -21437.622715 eV Core-core repulsion = 18088.471702 eV Total energy + Delta-G solvation = -3349.151012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.32838 -39.28697 -37.60147 -35.11250 -34.09948 -32.61417 -32.22017 -29.81619 -29.09574 -26.82579 -25.22004 -24.88652 -21.95911 -20.55469 -20.15588 -18.57106 -17.61654 -16.98351 -16.59999 -15.86752 -15.73638 -15.26770 -14.71325 -14.62345 -14.23547 -14.01714 -13.53537 -13.16991 -12.86224 -12.73349 -12.61329 -12.47503 -12.15233 -12.00119 -11.72047 -11.57987 -11.47315 -11.08506 -10.97797 -10.84906 -10.51559 -10.31316 -9.87187 -9.84127 -9.27785 -8.97652 -8.79458 -8.46427 -7.95652 -6.42666 -4.53966 2.61070 2.89426 3.09078 3.14819 3.21076 3.22789 3.64418 4.15615 4.66987 4.79885 4.82095 5.00544 5.09283 5.10606 5.29477 5.39858 5.49419 5.57332 5.70178 5.84096 5.89222 5.96979 6.09702 6.12083 6.22640 6.36840 6.38530 6.43737 6.62211 6.74840 7.05508 7.53660 7.59975 7.75465 8.21508 8.35247 8.49099 8.57790 9.17489 9.44716 10.64203 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033762 B = 0.004383 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.133627 B = 6386.275624 C = 6552.071737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.132 3.868 4 H 0.106 0.894 5 N -0.711 5.711 6 C 0.511 3.489 7 C -0.169 4.169 8 O -0.545 6.545 9 C 0.532 3.468 10 O -0.561 6.561 11 N -0.628 5.628 12 C 0.079 3.921 13 C 0.241 3.759 14 O -0.573 6.573 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.910 3.090 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.097 3.903 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.409 0.591 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.395 0.605 36 H 0.275 0.725 37 H 0.090 0.910 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 -3.014 8.186 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.023 3.977 4 H 0.124 0.876 5 N -0.365 5.365 6 C 0.298 3.702 7 C -0.229 4.229 8 O -0.422 6.422 9 C 0.321 3.679 10 O -0.441 6.441 11 N -0.360 5.360 12 C -0.043 4.043 13 C 0.199 3.801 14 O -0.386 6.386 15 C -0.575 4.575 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.737 3.263 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.025 4.025 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.246 0.754 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.252 0.748 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.356 -2.973 8.429 13.680 hybrid contribution 1.420 -0.277 -0.552 1.549 sum -8.936 -3.250 7.878 12.348 Atomic orbital electron populations 1.21785 0.94128 1.00702 1.03131 1.21800 0.97332 0.94107 1.03029 1.20813 0.92132 0.95458 0.89271 0.87599 1.45947 1.17050 1.57247 1.16264 1.20752 0.81202 0.77979 0.90273 1.21834 1.03458 1.02529 0.95086 1.90728 1.51481 1.59288 1.40734 1.19900 0.89122 0.76870 0.82050 1.90627 1.65029 1.52746 1.35682 1.49717 1.12545 1.69222 1.04551 1.24174 0.83011 1.01343 0.95763 1.19466 0.89122 0.80404 0.91074 1.86020 1.41794 1.19699 1.91080 1.21370 1.04473 1.25564 1.06065 0.90869 1.25089 0.96157 0.94122 0.97659 1.69254 1.15631 1.30155 1.38655 0.86349 0.78218 0.79154 0.82571 1.19777 1.20965 1.19839 1.23496 1.00437 1.00431 0.78150 0.92552 0.93256 0.91867 0.91298 0.90569 0.75443 0.90528 0.88693 0.88827 0.91642 0.90027 0.74787 0.91425 0.89199 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.51 37.16 0.32 -1.49 16 2 C -0.12 -1.70 5.59 -26.73 -0.15 -1.84 16 3 C 0.13 2.10 2.53 -69.07 -0.17 1.93 16 4 H 0.11 1.82 7.31 -51.93 -0.38 1.44 16 5 N -0.71 -9.92 5.01 -54.92 -0.27 -10.19 16 6 C 0.51 6.77 6.50 -10.98 -0.07 6.70 16 7 C -0.17 -1.45 10.39 36.01 0.37 -1.08 16 8 O -0.54 -9.01 14.24 5.56 0.08 -8.93 16 9 C 0.53 10.41 7.27 -10.98 -0.08 10.33 16 10 O -0.56 -12.21 16.83 5.56 0.09 -12.12 16 11 N -0.63 -12.95 3.69 -185.37 -0.68 -13.63 16 12 C 0.08 1.79 8.02 -8.64 -0.07 1.72 16 13 C 0.24 5.70 1.57 -91.39 -0.14 5.55 16 14 O -0.57 -14.74 13.54 -35.23 -0.48 -15.22 16 15 C -0.54 -13.16 8.69 -34.44 -0.30 -13.46 16 16 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.07 1.79 5.39 -17.82 -0.10 1.69 16 18 N -0.90 -22.83 11.01 55.43 0.61 -22.22 16 19 Si 0.91 19.18 29.54 -169.99 -5.02 14.16 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C 0.10 1.93 7.69 -8.50 -0.07 1.87 16 24 H 0.06 0.75 5.65 -51.93 -0.29 0.46 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.41 5.32 7.65 -40.82 -0.31 5.01 16 30 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 35 H 0.40 10.39 6.32 45.56 0.29 10.68 16 36 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 38 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -29.31 319.24 -6.18 -35.49 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -4.86 Total: 15.93 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -0.46 Total: 11.92 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.35 Total: -46.05 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.30 Total: -36.27 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.31 -6.18 -35.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329435023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.919 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds