Wall clock time and date at job start Mon Mar 30 2020 01:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47049 * 2 1 4 4 H 1.08999 * 109.47556 * 304.80672 * 3 2 1 5 5 N 1.46503 * 109.46608 * 64.80769 * 3 2 1 6 6 C 1.34773 * 120.00056 * 274.99523 * 5 3 2 7 7 C 1.50705 * 120.00331 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99941 * 0.02562 * 6 5 3 9 9 C 1.50704 * 109.47148 * 184.80392 * 3 2 1 10 10 O 1.21278 * 119.99946 * 267.55878 * 9 3 2 11 11 N 1.34777 * 119.99747 * 87.55247 * 9 3 2 12 12 C 1.47062 * 136.05274 * 184.66560 * 11 9 3 13 13 C 1.53241 * 88.08281 * 207.20738 * 12 11 9 14 14 O 1.42902 * 114.19293 * 87.72870 * 13 12 11 15 15 C 1.50695 * 114.32877 * 220.47207 * 13 12 11 16 16 H 1.08000 * 120.00182 * 93.76027 * 15 13 12 17 17 C 1.37872 * 120.00125 * 273.76015 * 15 13 12 18 18 N 1.31514 * 120.00297 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00105 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46988 * 60.00114 * 19 17 15 21 21 H 1.48509 * 109.47313 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47468 * 299.99901 * 19 17 15 23 23 C 1.47065 * 136.05771 * 5.04836 * 11 9 3 24 24 H 1.09003 * 109.47056 * 300.00142 * 1 2 3 25 25 H 1.08999 * 109.47518 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47183 * 59.99119 * 1 2 3 27 27 H 1.08993 * 109.47135 * 120.00286 * 2 1 3 28 28 H 1.08997 * 109.46949 * 240.00560 * 2 1 3 29 29 H 0.97001 * 120.00296 * 95.00024 * 5 3 2 30 30 H 1.09004 * 109.46668 * 0.02562 * 7 6 5 31 31 H 1.08998 * 109.47073 * 119.99968 * 7 6 5 32 32 H 1.09004 * 109.46925 * 240.00136 * 7 6 5 33 33 H 1.08994 * 113.47070 * 321.93980 * 12 11 9 34 34 H 1.09004 * 113.46566 * 92.38803 * 12 11 9 35 35 H 0.96703 * 113.99910 * 86.30726 * 14 13 12 36 36 H 0.96996 * 120.00501 * 179.97438 * 18 17 15 37 37 H 1.09006 * 113.46172 * 267.61606 * 23 11 9 38 38 H 1.08991 * 113.47179 * 37.99497 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6081 1.9807 -0.8438 5 7 1.6484 2.0989 1.2499 6 6 0.4307 2.6659 1.3605 7 6 0.0281 3.3415 2.6461 8 8 -0.3410 2.6325 0.4255 9 6 3.5423 1.4443 -0.1190 10 8 4.2297 1.4604 0.8800 11 7 4.1219 1.4278 -1.3357 12 6 5.4958 1.3403 -1.8529 13 6 5.0216 2.1016 -3.0954 14 8 5.0832 3.5238 -2.9697 15 6 5.5963 1.5928 -4.3922 16 1 5.0524 0.8638 -4.9747 17 6 6.8163 2.0578 -4.8351 18 7 7.4784 2.9458 -4.1262 19 14 7.5289 1.4264 -6.4423 20 1 6.5984 1.7443 -7.5551 21 1 8.8398 2.0781 -6.6924 22 1 7.7150 -0.0443 -6.3574 23 6 3.6593 1.4961 -2.7300 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 -0.8899 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 2.2655 2.1254 1.9979 30 1 0.8448 3.2715 3.3646 31 1 -0.1948 4.3905 2.4509 32 1 -0.8568 2.8515 3.0523 33 1 6.2203 1.8944 -1.2563 34 1 5.8156 0.3200 -2.0649 35 1 5.9427 3.9022 -3.2006 36 1 8.3369 3.2727 -4.4376 37 1 3.4850 0.5177 -3.1778 38 1 2.8249 2.1815 -2.8774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329435023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:18 Heat of formation + Delta-G solvation = -112.152390 kcal Electronic energy + Delta-G solvation = -21438.609158 eV Core-core repulsion = 18088.471702 eV Total energy + Delta-G solvation = -3350.137456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74670 -40.69184 -39.20280 -36.37449 -35.96103 -34.14141 -33.69583 -30.97388 -30.45588 -28.28107 -26.94769 -26.46941 -23.14118 -22.02572 -21.46140 -20.16983 -19.36568 -18.40932 -17.93498 -17.27307 -17.10644 -16.89345 -16.22918 -16.05822 -15.98493 -15.05191 -14.98762 -14.60917 -14.43100 -14.25632 -13.83774 -13.62167 -13.42374 -13.32741 -13.10538 -12.88173 -12.76641 -12.70652 -12.52813 -12.24338 -12.21185 -11.93685 -11.53483 -10.97384 -10.90853 -10.65602 -10.35018 -10.15125 -9.67864 -8.28457 -6.46609 1.36050 1.49174 1.50524 1.58193 1.59386 1.70709 2.33623 2.41623 2.94168 3.21617 3.69654 3.81353 3.86207 3.96775 4.12263 4.30826 4.38404 4.45861 4.53815 4.57322 4.66325 4.69290 4.77751 4.85688 4.89972 4.95810 5.01314 5.08478 5.20078 5.29785 5.38625 5.71725 5.87409 6.48638 6.60742 6.74776 6.94423 7.18584 7.27704 7.43346 8.77774 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033762 B = 0.004383 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.133627 B = 6386.275624 C = 6552.071737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.118 4.118 3 C 0.141 3.859 4 H 0.094 0.906 5 N -0.711 5.711 6 C 0.506 3.494 7 C -0.162 4.162 8 O -0.580 6.580 9 C 0.529 3.471 10 O -0.586 6.586 11 N -0.631 5.631 12 C 0.082 3.918 13 C 0.217 3.783 14 O -0.587 6.587 15 C -0.551 4.551 16 H 0.084 0.916 17 C 0.028 3.972 18 N -0.923 5.923 19 Si 0.974 3.026 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.111 3.889 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.414 0.586 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.388 0.612 36 H 0.276 0.724 37 H 0.119 0.881 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 -4.078 8.346 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.157 4.157 3 C 0.032 3.968 4 H 0.112 0.888 5 N -0.366 5.366 6 C 0.296 3.704 7 C -0.221 4.221 8 O -0.460 6.460 9 C 0.319 3.681 10 O -0.468 6.468 11 N -0.364 5.364 12 C -0.041 4.041 13 C 0.176 3.824 14 O -0.400 6.400 15 C -0.589 4.589 16 H 0.102 0.898 17 C -0.172 4.172 18 N -0.564 5.564 19 Si 0.798 3.202 20 H -0.194 1.194 21 H -0.212 1.212 22 H -0.191 1.191 23 C -0.010 4.010 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.252 0.748 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.244 0.756 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.559 -4.043 8.611 14.970 hybrid contribution 1.793 0.087 -0.552 1.879 sum -9.766 -3.956 8.059 13.265 Atomic orbital electron populations 1.21694 0.93192 1.01775 1.02192 1.21794 0.97920 0.92387 1.03592 1.20695 0.88983 0.97111 0.90041 0.88815 1.46036 1.17626 1.57357 1.15572 1.21619 0.80242 0.77144 0.91395 1.21881 1.04916 1.02444 0.92816 1.90714 1.52312 1.60569 1.42420 1.20573 0.90603 0.75728 0.81168 1.90607 1.66055 1.53737 1.36370 1.49741 1.11649 1.69600 1.05378 1.24012 0.83527 1.01327 0.95214 1.19813 0.91848 0.79426 0.91363 1.86005 1.41427 1.21362 1.91219 1.21691 1.04803 1.25822 1.06566 0.89803 1.25860 0.96548 0.94282 1.00547 1.69346 1.15878 1.31121 1.40046 0.85359 0.77202 0.78762 0.78845 1.19434 1.21241 1.19077 1.23472 0.98514 1.01622 0.77442 0.93099 0.91106 0.93185 0.90695 0.90049 0.74841 0.88424 0.87824 0.87003 0.94498 0.88990 0.75574 0.91454 0.86306 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.51 71.98 0.61 -2.52 16 2 C -0.12 -3.03 5.59 30.60 0.17 -2.86 16 3 C 0.14 4.36 2.53 44.25 0.11 4.47 16 4 H 0.09 3.17 7.31 -2.39 -0.02 3.15 16 5 N -0.71 -19.01 5.01 -446.07 -2.23 -21.24 16 6 C 0.51 12.67 6.50 87.66 0.57 13.24 16 7 C -0.16 -2.34 10.39 71.24 0.74 -1.60 16 8 O -0.58 -18.66 14.24 -3.04 -0.04 -18.70 16 9 C 0.53 20.47 7.27 87.66 0.64 21.10 16 10 O -0.59 -25.47 16.83 -3.02 -0.05 -25.52 16 11 N -0.63 -25.82 3.69 -859.26 -3.17 -29.00 16 12 C 0.08 3.75 8.02 83.10 0.67 4.42 16 13 C 0.22 10.26 1.57 -11.29 -0.02 10.24 16 14 O -0.59 -30.87 13.54 -148.98 -2.02 -32.89 16 15 C -0.55 -26.71 8.69 25.60 0.22 -26.48 16 16 H 0.08 3.79 7.81 -2.91 -0.02 3.76 16 17 C 0.03 1.35 5.39 84.65 0.46 1.81 16 18 N -0.92 -47.61 11.01 21.45 0.24 -47.38 16 19 Si 0.97 38.84 29.54 68.60 2.03 40.86 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.29 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 23 C 0.11 4.30 7.69 83.18 0.64 4.94 16 24 H 0.05 1.27 5.65 -2.39 -0.01 1.25 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.05 1.33 7.84 -2.39 -0.02 1.31 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 29 H 0.41 10.25 7.65 -92.71 -0.71 9.54 16 30 H 0.10 1.01 7.91 -2.39 -0.02 0.99 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 3.93 8.10 -2.38 -0.02 3.91 16 35 H 0.39 21.11 6.32 -74.06 -0.47 20.64 16 36 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 37 H 0.12 3.88 8.10 -2.38 -0.02 3.86 16 38 H 0.07 2.80 8.06 -2.39 -0.02 2.78 16 Total: -1.00 -63.06 319.24 -0.54 -63.59 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -0.09 Total: 43.49 kcal Atomic # 6 Polarization: 21.96 SS G_CDS: 4.81 Total: 26.77 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -5.17 Total: -97.61 kcal Atomic # 8 Polarization: -74.99 SS G_CDS: -2.11 Total: -77.10 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.86 kcal Total: -63.06 -0.54 -63.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329435023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.561 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds