Wall clock time and date at job start Mon Mar 30 2020 01:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 H 1.08996 * 109.47031 * 54.94298 * 3 2 1 5 5 N 1.46500 * 109.46731 * 294.94616 * 3 2 1 6 6 C 1.34779 * 119.99949 * 84.99968 * 5 3 2 7 7 C 1.50704 * 119.99851 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00323 * 359.97438 * 6 5 3 9 9 C 1.50691 * 109.47340 * 174.94807 * 3 2 1 10 10 O 1.21282 * 120.00558 * 92.96433 * 9 3 2 11 11 N 1.34779 * 120.00300 * 272.96557 * 9 3 2 12 12 C 1.47590 * 134.48633 * 354.74039 * 11 9 3 13 13 C 1.53943 * 86.11534 * 204.65714 * 12 11 9 14 14 O 1.42907 * 113.74215 * 90.73825 * 13 12 11 15 15 C 1.50700 * 113.74315 * 221.94417 * 13 12 11 16 16 H 1.07999 * 119.99832 * 358.07253 * 15 13 12 17 17 C 1.37879 * 119.99925 * 178.07773 * 15 13 12 18 18 N 1.31511 * 120.00180 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99752 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47056 * 89.99758 * 19 17 15 21 21 H 1.48503 * 109.47033 * 209.99829 * 19 17 15 22 22 H 1.48505 * 109.47000 * 329.99582 * 19 17 15 23 23 C 1.47926 * 134.50842 * 174.77010 * 11 9 3 24 24 H 1.09001 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47581 * 300.00824 * 1 2 3 26 26 H 1.09006 * 109.46839 * 60.00137 * 1 2 3 27 27 H 1.08998 * 109.47752 * 239.99697 * 2 1 3 28 28 H 1.08999 * 109.47159 * 119.99616 * 2 1 3 29 29 H 0.97002 * 120.00090 * 265.00349 * 5 3 2 30 30 H 1.09003 * 109.47209 * 0.02562 * 7 6 5 31 31 H 1.09004 * 109.47204 * 119.99996 * 7 6 5 32 32 H 1.08995 * 109.47181 * 239.99793 * 7 6 5 33 33 H 1.08994 * 113.76715 * 90.35561 * 12 11 9 34 34 H 1.08996 * 113.87149 * 318.97196 * 12 11 9 35 35 H 0.96693 * 113.99928 * 181.92379 * 14 13 12 36 36 H 0.96999 * 120.00049 * 180.02562 * 18 17 15 37 37 H 1.08999 * 113.86416 * 41.07347 * 23 11 9 38 38 H 1.09003 * 113.76436 * 269.58744 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9818 0.8412 5 7 1.6536 2.0970 -1.2524 6 6 0.4363 2.6639 -1.3688 7 6 0.0390 3.3377 -2.6569 8 8 -0.3392 2.6318 -0.4370 9 6 3.5417 1.4444 0.1251 10 8 4.2333 1.4686 -0.8709 11 7 4.1165 1.4190 1.3439 12 6 3.6089 1.4833 2.7283 13 6 5.0019 2.0209 3.1029 14 8 5.1022 3.4455 3.0500 15 6 5.5533 1.4402 4.3796 16 1 4.9638 0.7403 4.9532 17 6 6.8102 1.8025 4.8153 18 7 7.5282 2.6545 4.1166 19 14 7.4933 1.0832 6.3981 20 1 8.2310 -0.1693 6.0947 21 1 8.4164 2.0610 7.0283 22 1 6.3756 0.7862 7.3297 23 6 5.5093 1.3163 1.8317 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.2737 2.1224 -1.9979 30 1 0.8583 3.2660 -3.3723 31 1 -0.8442 2.8472 -3.0662 32 1 -0.1847 4.3869 -2.4642 33 1 3.3840 0.5078 3.1594 34 1 2.8060 2.2065 2.8706 35 1 5.9835 3.7856 3.2561 36 1 8.4126 2.9091 4.4230 37 1 6.2225 1.9069 1.2568 38 1 5.8413 0.2918 2.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329435024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:22 Heat of formation + Delta-G solvation = -93.475007 kcal Electronic energy + Delta-G solvation = -21450.130136 eV Core-core repulsion = 18100.802592 eV Total energy + Delta-G solvation = -3349.327544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29736 -39.19124 -37.51975 -35.10737 -34.02594 -32.60603 -32.24673 -29.80792 -29.00534 -26.81054 -25.32834 -24.88362 -21.94449 -20.50741 -20.09904 -18.57598 -17.57271 -16.99934 -16.59773 -15.88115 -15.73201 -15.26570 -14.70680 -14.61182 -14.20698 -14.01272 -13.53322 -13.15072 -12.81193 -12.69672 -12.57536 -12.47207 -12.16374 -12.01343 -11.71311 -11.59180 -11.46894 -11.11443 -10.97352 -10.84018 -10.56163 -10.33811 -9.87032 -9.81406 -9.27379 -8.97887 -8.79153 -8.47532 -7.93763 -6.41035 -4.52141 2.61274 2.90927 3.09280 3.13746 3.22131 3.24863 3.64006 4.16844 4.65285 4.81320 4.83061 5.01206 5.09280 5.10996 5.29322 5.39960 5.50247 5.57846 5.70230 5.84716 5.91905 5.97713 6.10071 6.13740 6.20593 6.34399 6.39140 6.44169 6.63639 6.73591 7.05076 7.53979 7.60637 7.77731 8.21459 8.34159 8.50860 8.57000 9.19077 9.38459 10.65870 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033979 B = 0.004408 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.838971 B = 6349.927957 C = 6529.666588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.130 3.870 4 H 0.106 0.894 5 N -0.711 5.711 6 C 0.510 3.490 7 C -0.170 4.170 8 O -0.545 6.545 9 C 0.525 3.475 10 O -0.561 6.561 11 N -0.626 5.626 12 C 0.101 3.899 13 C 0.240 3.760 14 O -0.573 6.573 15 C -0.540 4.540 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.270 1.270 23 C 0.088 3.912 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.409 0.591 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.393 0.607 36 H 0.274 0.726 37 H 0.069 0.931 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.738 -2.565 -8.380 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.022 3.978 4 H 0.124 0.876 5 N -0.365 5.365 6 C 0.298 3.702 7 C -0.229 4.229 8 O -0.423 6.423 9 C 0.313 3.687 10 O -0.442 6.442 11 N -0.359 5.359 12 C -0.021 4.021 13 C 0.198 3.802 14 O -0.385 6.385 15 C -0.578 4.578 16 H 0.090 0.910 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.034 4.034 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.246 0.754 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.448 -2.502 -8.572 13.745 hybrid contribution 1.432 -0.350 0.531 1.567 sum -9.016 -2.852 -8.042 12.414 Atomic orbital electron populations 1.21785 0.94146 1.00695 1.03122 1.21798 0.97308 0.94130 1.03032 1.20832 0.92367 0.95455 0.89155 0.87633 1.45952 1.16985 1.57281 1.16286 1.20751 0.81228 0.77982 0.90265 1.21834 1.03484 1.02536 0.95062 1.90726 1.51218 1.59278 1.41030 1.20062 0.89195 0.76893 0.82531 1.90624 1.64748 1.52674 1.36134 1.50293 1.11979 1.69269 1.04333 1.23618 0.99978 1.00447 0.78089 1.19824 0.88763 0.80387 0.91227 1.86034 1.39131 1.20375 1.92987 1.21477 1.01373 1.27189 1.07762 0.90962 1.25079 0.96296 0.94205 0.97449 1.69405 1.12235 1.33022 1.38923 0.86329 0.78916 0.78853 0.82412 1.20304 1.20893 1.19505 1.24366 0.82258 1.01219 0.95509 0.93267 0.91884 0.92549 0.91321 0.90555 0.75448 0.90534 0.88839 0.88702 0.89143 0.90854 0.75195 0.91619 0.91219 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.52 37.15 0.32 -1.49 16 2 C -0.12 -1.70 5.59 -26.73 -0.15 -1.85 16 3 C 0.13 2.07 2.48 -69.08 -0.17 1.90 16 4 H 0.11 1.80 7.21 -51.93 -0.37 1.42 16 5 N -0.71 -9.88 5.01 -54.93 -0.28 -10.16 16 6 C 0.51 6.74 6.51 -10.98 -0.07 6.67 16 7 C -0.17 -1.44 10.39 36.01 0.37 -1.07 16 8 O -0.54 -8.98 14.24 5.56 0.08 -8.90 16 9 C 0.53 10.21 7.25 -10.99 -0.08 10.13 16 10 O -0.56 -12.19 16.78 5.56 0.09 -12.09 16 11 N -0.63 -12.84 3.62 -178.01 -0.64 -13.48 16 12 C 0.10 1.99 7.81 -2.96 -0.02 1.97 16 13 C 0.24 5.62 1.40 -90.85 -0.13 5.50 16 14 O -0.57 -14.58 13.49 -35.23 -0.48 -15.06 16 15 C -0.54 -13.25 8.61 -34.44 -0.30 -13.54 16 16 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 17 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 18 N -0.90 -22.77 11.20 55.43 0.62 -22.15 16 19 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C 0.09 1.99 8.25 -2.78 -0.02 1.96 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.88 7.85 -51.93 -0.41 0.47 16 26 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.41 5.31 7.64 -40.82 -0.31 5.00 16 30 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.58 8.09 -51.93 -0.42 1.16 16 34 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 35 H 0.39 10.20 6.60 45.56 0.30 10.50 16 36 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 37 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -29.23 319.45 -5.99 -35.22 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -4.84 Total: 15.69 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -0.35 Total: 11.88 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.30 Total: -45.79 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.30 Total: -36.06 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.23 -5.99 -35.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329435024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.251 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds