Wall clock time and date at job start Mon Mar 30 2020 01:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 H 1.08996 * 109.47031 * 54.94298 * 3 2 1 5 5 N 1.46500 * 109.46731 * 294.94616 * 3 2 1 6 6 C 1.34779 * 119.99949 * 84.99968 * 5 3 2 7 7 C 1.50704 * 119.99851 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00323 * 359.97438 * 6 5 3 9 9 C 1.50691 * 109.47340 * 174.94807 * 3 2 1 10 10 O 1.21282 * 120.00558 * 92.96433 * 9 3 2 11 11 N 1.34779 * 120.00300 * 272.96557 * 9 3 2 12 12 C 1.47590 * 134.48633 * 354.74039 * 11 9 3 13 13 C 1.53943 * 86.11534 * 204.65714 * 12 11 9 14 14 O 1.42907 * 113.74215 * 90.73825 * 13 12 11 15 15 C 1.50700 * 113.74315 * 221.94417 * 13 12 11 16 16 H 1.07999 * 119.99832 * 358.07253 * 15 13 12 17 17 C 1.37879 * 119.99925 * 178.07773 * 15 13 12 18 18 N 1.31511 * 120.00180 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99752 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47056 * 89.99758 * 19 17 15 21 21 H 1.48503 * 109.47033 * 209.99829 * 19 17 15 22 22 H 1.48505 * 109.47000 * 329.99582 * 19 17 15 23 23 C 1.47926 * 134.50842 * 174.77010 * 11 9 3 24 24 H 1.09001 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47581 * 300.00824 * 1 2 3 26 26 H 1.09006 * 109.46839 * 60.00137 * 1 2 3 27 27 H 1.08998 * 109.47752 * 239.99697 * 2 1 3 28 28 H 1.08999 * 109.47159 * 119.99616 * 2 1 3 29 29 H 0.97002 * 120.00090 * 265.00349 * 5 3 2 30 30 H 1.09003 * 109.47209 * 0.02562 * 7 6 5 31 31 H 1.09004 * 109.47204 * 119.99996 * 7 6 5 32 32 H 1.08995 * 109.47181 * 239.99793 * 7 6 5 33 33 H 1.08994 * 113.76715 * 90.35561 * 12 11 9 34 34 H 1.08996 * 113.87149 * 318.97196 * 12 11 9 35 35 H 0.96693 * 113.99928 * 181.92379 * 14 13 12 36 36 H 0.96999 * 120.00049 * 180.02562 * 18 17 15 37 37 H 1.08999 * 113.86416 * 41.07347 * 23 11 9 38 38 H 1.09003 * 113.76436 * 269.58744 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9818 0.8412 5 7 1.6536 2.0970 -1.2524 6 6 0.4363 2.6639 -1.3688 7 6 0.0390 3.3377 -2.6569 8 8 -0.3392 2.6318 -0.4370 9 6 3.5417 1.4444 0.1251 10 8 4.2333 1.4686 -0.8709 11 7 4.1165 1.4190 1.3439 12 6 3.6089 1.4833 2.7283 13 6 5.0019 2.0209 3.1029 14 8 5.1022 3.4455 3.0500 15 6 5.5533 1.4402 4.3796 16 1 4.9638 0.7403 4.9532 17 6 6.8102 1.8025 4.8153 18 7 7.5282 2.6545 4.1166 19 14 7.4933 1.0832 6.3981 20 1 8.2310 -0.1693 6.0947 21 1 8.4164 2.0610 7.0283 22 1 6.3756 0.7862 7.3297 23 6 5.5093 1.3163 1.8317 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.2737 2.1224 -1.9979 30 1 0.8583 3.2660 -3.3723 31 1 -0.8442 2.8472 -3.0662 32 1 -0.1847 4.3869 -2.4642 33 1 3.3840 0.5078 3.1594 34 1 2.8060 2.2065 2.8706 35 1 5.9835 3.7856 3.2561 36 1 8.4126 2.9091 4.4230 37 1 6.2225 1.9069 1.2568 38 1 5.8413 0.2918 2.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329435024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:21 Heat of formation + Delta-G solvation = -116.075535 kcal Electronic energy + Delta-G solvation = -21451.110169 eV Core-core repulsion = 18100.802592 eV Total energy + Delta-G solvation = -3350.307577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.68098 -40.60430 -39.13155 -36.36548 -35.87079 -34.16431 -33.68603 -30.90693 -30.41281 -28.26742 -27.04906 -26.46590 -23.11450 -21.93268 -21.45256 -20.16351 -19.31973 -18.42990 -17.92797 -17.27819 -17.09485 -16.88250 -16.21926 -16.04380 -15.95498 -15.04363 -14.96736 -14.51594 -14.39392 -14.24659 -13.83905 -13.62661 -13.43543 -13.32468 -13.10399 -12.87799 -12.81651 -12.69736 -12.52147 -12.27717 -12.23636 -11.93135 -11.50170 -10.96760 -10.91405 -10.64739 -10.37320 -10.13073 -9.65324 -8.27195 -6.45059 1.38311 1.46789 1.50139 1.58922 1.59896 1.70891 2.33853 2.41456 2.96149 3.20223 3.71367 3.82259 3.87255 3.97440 4.16925 4.31385 4.39115 4.46259 4.53970 4.56469 4.66538 4.68306 4.78135 4.85437 4.91150 4.96298 5.01794 5.08856 5.20652 5.30708 5.39121 5.71948 5.89978 6.49397 6.62331 6.73058 6.95350 7.19169 7.28570 7.39087 8.78990 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033979 B = 0.004408 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.838971 B = 6349.927957 C = 6529.666588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.118 4.118 3 C 0.139 3.861 4 H 0.095 0.905 5 N -0.711 5.711 6 C 0.506 3.494 7 C -0.162 4.162 8 O -0.580 6.580 9 C 0.523 3.477 10 O -0.587 6.587 11 N -0.629 5.629 12 C 0.115 3.885 13 C 0.217 3.783 14 O -0.586 6.586 15 C -0.554 4.554 16 H 0.081 0.919 17 C 0.029 3.971 18 N -0.921 5.921 19 Si 0.970 3.030 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.091 3.909 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.414 0.586 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.386 0.614 36 H 0.274 0.726 37 H 0.042 0.958 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 -3.533 -8.599 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.157 4.157 3 C 0.030 3.970 4 H 0.112 0.888 5 N -0.366 5.366 6 C 0.296 3.704 7 C -0.221 4.221 8 O -0.460 6.460 9 C 0.312 3.688 10 O -0.469 6.469 11 N -0.362 5.362 12 C -0.007 4.007 13 C 0.176 3.824 14 O -0.398 6.398 15 C -0.592 4.592 16 H 0.099 0.901 17 C -0.171 4.171 18 N -0.561 5.561 19 Si 0.795 3.205 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.032 4.032 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.251 0.749 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.240 0.760 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.701 -3.473 -8.812 15.054 hybrid contribution 1.823 -0.016 0.555 1.905 sum -9.878 -3.490 -8.257 13.339 Atomic orbital electron populations 1.21693 0.93206 1.01750 1.02203 1.21792 0.97903 0.92464 1.03554 1.20709 0.89227 0.97065 0.89963 0.88752 1.46038 1.17564 1.57390 1.15592 1.21612 0.80263 0.77145 0.91389 1.21879 1.04938 1.02471 0.92782 1.90712 1.52046 1.60554 1.42705 1.20704 0.90678 0.75755 0.81633 1.90605 1.65780 1.53666 1.36819 1.50282 1.11070 1.69630 1.05185 1.23621 0.98026 1.01738 0.77281 1.20162 0.91420 0.79411 0.91396 1.86021 1.38716 1.21959 1.93087 1.21781 1.01728 1.27400 1.08301 0.90116 1.25820 0.96638 0.94522 1.00159 1.69496 1.12459 1.33970 1.40225 0.85361 0.78179 0.77967 0.78967 1.19951 1.21190 1.18884 1.24164 0.82922 1.00985 0.95125 0.91158 0.93154 0.93102 0.90766 0.90075 0.74856 0.88441 0.87043 0.87812 0.86365 0.90140 0.75965 0.91617 0.93888 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.52 71.98 0.61 -2.52 16 2 C -0.12 -3.04 5.59 30.59 0.17 -2.87 16 3 C 0.14 4.29 2.48 44.24 0.11 4.40 16 4 H 0.09 3.16 7.21 -2.39 -0.02 3.14 16 5 N -0.71 -18.90 5.01 -446.10 -2.23 -21.13 16 6 C 0.51 12.59 6.51 87.66 0.57 13.16 16 7 C -0.16 -2.33 10.39 71.24 0.74 -1.59 16 8 O -0.58 -18.55 14.24 -3.02 -0.04 -18.59 16 9 C 0.52 20.08 7.25 87.65 0.64 20.72 16 10 O -0.59 -25.39 16.78 -3.03 -0.05 -25.44 16 11 N -0.63 -25.58 3.62 -839.31 -3.03 -28.62 16 12 C 0.12 4.41 7.81 86.48 0.68 5.08 16 13 C 0.22 10.21 1.40 -10.88 -0.02 10.19 16 14 O -0.59 -30.39 13.49 -148.98 -2.01 -32.40 16 15 C -0.55 -26.89 8.61 25.60 0.22 -26.67 16 16 H 0.08 3.69 7.81 -2.91 -0.02 3.67 16 17 C 0.03 1.42 5.39 84.66 0.46 1.88 16 18 N -0.92 -47.36 11.20 21.45 0.24 -47.12 16 19 Si 0.97 39.02 29.54 68.60 2.03 41.05 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 21 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 C 0.09 4.13 8.25 86.42 0.71 4.85 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16 26 H 0.05 1.27 5.64 -2.38 -0.01 1.25 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.41 10.21 7.64 -92.71 -0.71 9.50 16 30 H 0.10 1.00 7.91 -2.39 -0.02 0.98 16 31 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.12 3.85 8.09 -2.39 -0.02 3.83 16 34 H 0.08 2.96 8.04 -2.39 -0.02 2.94 16 35 H 0.39 20.69 6.60 -74.06 -0.49 20.20 16 36 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 37 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.09 3.86 8.09 -2.39 -0.02 3.84 16 Total: -1.00 -62.64 319.45 -0.33 -62.96 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: -0.11 Total: 42.65 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 4.89 Total: 26.64 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -5.03 Total: -96.87 kcal Atomic # 8 Polarization: -74.33 SS G_CDS: -2.10 Total: -76.43 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -62.64 -0.33 -62.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329435024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.111 kcal (2) G-P(sol) polarization free energy of solvation -62.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds