Wall clock time and date at job start Mon Mar 30 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.61379 * 2 1 4 4 O 1.21289 * 120.00034 * 239.77284 * 3 2 1 5 5 N 1.34779 * 120.00189 * 59.78329 * 3 2 1 6 6 C 1.46501 * 119.99978 * 179.97438 * 5 3 2 7 7 C 1.50701 * 109.46959 * 180.02562 * 6 5 3 8 8 O 1.21288 * 119.99816 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99858 * 180.02562 * 7 6 5 10 10 C 1.37090 * 119.99854 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00034 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00224 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99736 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00290 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47646 * 59.99789 * 14 12 10 16 16 H 1.48502 * 109.47202 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47221 * 299.99635 * 14 12 10 18 18 C 1.53176 * 109.54107 * 239.77905 * 2 1 3 19 19 C 1.53093 * 109.16348 * 183.15264 * 18 2 1 20 20 O 1.42904 * 109.42351 * 57.60111 * 19 18 2 21 21 C 1.42902 * 114.09961 * 298.86177 * 20 19 18 22 22 C 1.53094 * 109.42545 * 61.14161 * 21 20 19 23 23 H 1.08993 * 109.47037 * 180.22600 * 1 2 3 24 24 H 1.09000 * 109.46734 * 300.22349 * 1 2 3 25 25 H 1.08993 * 109.47025 * 60.21871 * 1 2 3 26 26 H 0.96994 * 119.99999 * 359.97438 * 5 3 2 27 27 H 1.09002 * 109.46745 * 299.99487 * 6 5 3 28 28 H 1.08997 * 109.47196 * 59.99600 * 6 5 3 29 29 H 0.96998 * 119.99454 * 359.97438 * 9 7 6 30 30 H 0.97004 * 120.00163 * 180.02562 * 13 12 10 31 31 H 1.09004 * 109.52469 * 63.24696 * 18 2 1 32 32 H 1.08998 * 109.57356 * 303.08802 * 18 2 1 33 33 H 1.09002 * 109.48198 * 177.59219 * 19 18 2 34 34 H 1.08999 * 109.48029 * 297.61833 * 19 18 2 35 35 H 1.09000 * 109.47314 * 301.15801 * 21 20 19 36 36 H 1.09001 * 109.49082 * 181.13246 * 21 20 19 37 37 H 1.08997 * 109.52488 * 182.49772 * 22 21 20 38 38 H 1.08995 * 109.52127 * 62.29758 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0359 1.4195 0.0000 4 8 2.7376 1.8133 -0.9076 5 7 1.7088 2.2515 1.0086 6 6 2.2011 3.6314 1.0088 7 6 1.6965 4.3444 2.2369 8 8 0.9945 3.7579 3.0332 9 7 2.0247 5.6343 2.4497 10 6 1.5653 6.2831 3.5665 11 1 0.9401 5.7608 4.2757 12 6 1.9039 7.6127 3.7863 13 7 2.6650 8.2480 2.9237 14 14 1.2786 8.4966 5.3084 15 1 1.7673 7.7965 6.5234 16 1 1.7780 9.8951 5.3090 17 1 -0.2064 8.5009 5.3033 18 6 2.0424 -0.7266 -1.2473 19 6 3.5712 -0.7906 -1.1992 20 8 3.9817 -1.4506 -0.0001 21 6 3.5713 -0.7906 1.1991 22 6 2.0425 -0.7267 1.2474 23 1 -0.3633 -1.0276 0.0041 24 1 -0.3633 0.5173 0.8880 25 1 -0.3633 0.5104 -0.8919 26 1 1.1475 1.9367 1.7343 27 1 3.2911 3.6282 1.0131 28 1 1.8427 4.1451 0.1169 29 1 2.5858 6.1033 1.8126 30 1 2.9018 9.1761 3.0772 31 1 1.7284 -0.1845 -2.1394 32 1 1.6362 -1.7377 -1.2736 33 1 3.9393 -1.3441 -2.0631 34 1 3.9781 0.2205 -1.2150 35 1 3.9781 0.2205 1.2148 36 1 3.9394 -1.3440 2.0630 37 1 1.7285 -0.1846 2.1393 38 1 1.6362 -1.7378 1.2725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329568051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:24 Heat of formation + Delta-G solvation = -134.467572 kcal Electronic energy + Delta-G solvation = -21283.019012 eV Core-core repulsion = 17931.913897 eV Total energy + Delta-G solvation = -3351.105115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85386 -38.63647 -37.77194 -34.92790 -34.51265 -33.72675 -31.43048 -31.11735 -28.67299 -27.67889 -24.76397 -23.72785 -23.39559 -21.83210 -19.76970 -19.20058 -18.10314 -16.90749 -16.22454 -16.02776 -15.64975 -15.44187 -15.33401 -14.73992 -14.61158 -14.24101 -14.15199 -13.76720 -13.52002 -12.74507 -12.62022 -12.30119 -12.19807 -12.18312 -12.05494 -11.88103 -11.66324 -11.35653 -11.13244 -10.63259 -10.53775 -10.52795 -10.34645 -9.72592 -9.66455 -9.31681 -8.83440 -8.68085 -8.14218 -6.54989 -3.97309 2.72800 3.11050 3.18981 3.21012 3.30922 3.69524 3.86200 4.08000 4.39953 4.52261 4.64767 4.82806 4.90984 5.00207 5.13315 5.17724 5.36918 5.45752 5.50057 5.53941 5.59242 5.68523 5.79468 5.82944 5.89926 5.92283 5.95506 6.00677 6.02720 6.12180 6.63232 7.17062 7.42262 7.73776 7.87688 8.36436 8.41845 9.00614 9.34933 9.82630 10.61737 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037633 B = 0.003784 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.853973 B = 7398.497475 C = 7498.799198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C 0.519 3.481 4 O -0.546 6.546 5 N -0.703 5.703 6 C 0.108 3.892 7 C 0.427 3.573 8 O -0.598 6.598 9 N -0.548 5.548 10 C -0.307 4.307 11 H 0.105 0.895 12 C 0.027 3.973 13 N -0.894 5.894 14 Si 0.934 3.066 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.272 1.272 18 C -0.127 4.127 19 C 0.048 3.952 20 O -0.386 6.386 21 C 0.058 3.942 22 C -0.145 4.145 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.410 0.590 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.396 0.604 30 H 0.275 0.725 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 -15.088 -6.156 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C 0.305 3.695 4 O -0.424 6.424 5 N -0.357 5.357 6 C -0.020 4.020 7 C 0.212 3.788 8 O -0.485 6.485 9 N -0.182 5.182 10 C -0.436 4.436 11 H 0.123 0.877 12 C -0.176 4.176 13 N -0.534 5.534 14 Si 0.761 3.239 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.165 4.165 19 C -0.029 4.029 20 O -0.304 6.304 21 C -0.019 4.019 22 C -0.183 4.183 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.249 0.751 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.230 0.770 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.712 -15.104 -6.252 16.362 hybrid contribution -0.423 1.056 0.692 1.332 sum -1.135 -14.047 -5.560 15.150 Atomic orbital electron populations 1.21854 0.92014 1.02896 1.03056 1.20863 0.97568 0.92220 0.97794 1.20427 0.80257 0.87131 0.81674 1.90630 1.38246 1.77349 1.36201 1.45743 1.52781 1.11530 1.25656 1.20967 0.99824 0.82585 0.98625 1.19728 0.86765 0.83734 0.88526 1.90491 1.42936 1.66556 1.48498 1.41793 1.44691 1.09009 1.22734 1.19682 1.29574 0.93973 1.00385 0.87711 1.25328 0.96499 0.96690 0.99106 1.69606 1.35564 1.12253 1.36003 0.85867 0.79176 0.77993 0.80905 1.19750 1.20818 1.19753 1.22016 0.97275 1.00256 0.96909 1.22849 0.93654 0.99353 0.86997 1.87879 1.77270 1.51428 1.13871 1.22573 0.93330 0.97988 0.87997 1.22304 0.97300 1.01725 0.96926 0.91326 0.91516 0.91850 0.75127 0.89913 0.89854 0.77037 0.91487 0.90166 0.90673 0.89251 0.90445 0.93103 0.88565 0.89981 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.39 37.16 0.31 -1.09 16 2 C -0.08 -0.95 0.63 -155.47 -0.10 -1.05 16 3 C 0.52 7.85 5.15 -10.99 -0.06 7.79 16 4 O -0.55 -9.62 13.84 5.55 0.08 -9.55 16 5 N -0.70 -11.32 5.30 -61.47 -0.33 -11.65 16 6 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 7 C 0.43 9.61 7.85 -10.98 -0.09 9.52 16 8 O -0.60 -14.97 15.24 5.55 0.08 -14.89 16 9 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 10 C -0.31 -8.24 9.68 -14.94 -0.14 -8.39 16 11 H 0.11 2.92 7.16 -52.48 -0.38 2.55 16 12 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 13 N -0.89 -23.66 13.05 55.50 0.72 -22.94 16 14 Si 0.93 20.32 29.55 -169.99 -5.02 15.29 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 C -0.13 -1.40 4.56 -26.59 -0.12 -1.52 16 19 C 0.05 0.59 6.55 37.21 0.24 0.83 16 20 O -0.39 -5.09 10.77 -35.23 -0.38 -5.47 16 21 C 0.06 0.69 6.62 37.21 0.25 0.94 16 22 C -0.14 -1.54 4.86 -26.59 -0.13 -1.67 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.68 7.56 -51.93 -0.39 0.29 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.41 6.52 6.27 -40.82 -0.26 6.27 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.40 9.34 7.90 -40.82 -0.32 9.01 16 30 H 0.28 6.89 8.31 -40.82 -0.34 6.56 16 31 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.13 5.80 -51.93 -0.30 0.83 16 35 H 0.05 0.69 7.38 -51.93 -0.38 0.31 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.86 7.52 -51.93 -0.39 0.47 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 311.36 15.07 4.69 4.69 Total: -1.00 -30.30 311.36 -5.53 -35.83 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -5.35 Total: 14.26 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 0.04 Total: 7.88 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.34 Total: -48.05 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.22 Total: -29.90 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.30 -5.53 -35.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329568051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.637 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds