Wall clock time and date at job start Mon Mar 30 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.61379 * 2 1 4 4 O 1.21289 * 120.00034 * 239.77284 * 3 2 1 5 5 N 1.34779 * 120.00189 * 59.78329 * 3 2 1 6 6 C 1.46501 * 119.99978 * 179.97438 * 5 3 2 7 7 C 1.50701 * 109.46959 * 180.02562 * 6 5 3 8 8 O 1.21288 * 119.99816 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99858 * 180.02562 * 7 6 5 10 10 C 1.37090 * 119.99854 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00034 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00224 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99736 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00290 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47646 * 59.99789 * 14 12 10 16 16 H 1.48502 * 109.47202 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47221 * 299.99635 * 14 12 10 18 18 C 1.53176 * 109.54107 * 239.77905 * 2 1 3 19 19 C 1.53093 * 109.16348 * 183.15264 * 18 2 1 20 20 O 1.42904 * 109.42351 * 57.60111 * 19 18 2 21 21 C 1.42902 * 114.09961 * 298.86177 * 20 19 18 22 22 C 1.53094 * 109.42545 * 61.14161 * 21 20 19 23 23 H 1.08993 * 109.47037 * 180.22600 * 1 2 3 24 24 H 1.09000 * 109.46734 * 300.22349 * 1 2 3 25 25 H 1.08993 * 109.47025 * 60.21871 * 1 2 3 26 26 H 0.96994 * 119.99999 * 359.97438 * 5 3 2 27 27 H 1.09002 * 109.46745 * 299.99487 * 6 5 3 28 28 H 1.08997 * 109.47196 * 59.99600 * 6 5 3 29 29 H 0.96998 * 119.99454 * 359.97438 * 9 7 6 30 30 H 0.97004 * 120.00163 * 180.02562 * 13 12 10 31 31 H 1.09004 * 109.52469 * 63.24696 * 18 2 1 32 32 H 1.08998 * 109.57356 * 303.08802 * 18 2 1 33 33 H 1.09002 * 109.48198 * 177.59219 * 19 18 2 34 34 H 1.08999 * 109.48029 * 297.61833 * 19 18 2 35 35 H 1.09000 * 109.47314 * 301.15801 * 21 20 19 36 36 H 1.09001 * 109.49082 * 181.13246 * 21 20 19 37 37 H 1.08997 * 109.52488 * 182.49772 * 22 21 20 38 38 H 1.08995 * 109.52127 * 62.29758 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0359 1.4195 0.0000 4 8 2.7376 1.8133 -0.9076 5 7 1.7088 2.2515 1.0086 6 6 2.2011 3.6314 1.0088 7 6 1.6965 4.3444 2.2369 8 8 0.9945 3.7579 3.0332 9 7 2.0247 5.6343 2.4497 10 6 1.5653 6.2831 3.5665 11 1 0.9401 5.7608 4.2757 12 6 1.9039 7.6127 3.7863 13 7 2.6650 8.2480 2.9237 14 14 1.2786 8.4966 5.3084 15 1 1.7673 7.7965 6.5234 16 1 1.7780 9.8951 5.3090 17 1 -0.2064 8.5009 5.3033 18 6 2.0424 -0.7266 -1.2473 19 6 3.5712 -0.7906 -1.1992 20 8 3.9817 -1.4506 -0.0001 21 6 3.5713 -0.7906 1.1991 22 6 2.0425 -0.7267 1.2474 23 1 -0.3633 -1.0276 0.0041 24 1 -0.3633 0.5173 0.8880 25 1 -0.3633 0.5104 -0.8919 26 1 1.1475 1.9367 1.7343 27 1 3.2911 3.6282 1.0131 28 1 1.8427 4.1451 0.1169 29 1 2.5858 6.1033 1.8126 30 1 2.9018 9.1761 3.0772 31 1 1.7284 -0.1845 -2.1394 32 1 1.6362 -1.7377 -1.2736 33 1 3.9393 -1.3441 -2.0631 34 1 3.9781 0.2205 -1.2150 35 1 3.9781 0.2205 1.2148 36 1 3.9394 -1.3440 2.0630 37 1 1.7285 -0.1846 2.1393 38 1 1.6362 -1.7378 1.2725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329568051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:24 Heat of formation + Delta-G solvation = -157.155566 kcal Electronic energy + Delta-G solvation = -21284.002837 eV Core-core repulsion = 17931.913897 eV Total energy + Delta-G solvation = -3352.088940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.96302 -40.30622 -39.05415 -36.29567 -35.92037 -35.28137 -33.39107 -32.04977 -29.75001 -29.03696 -26.58018 -24.64630 -24.44347 -22.93087 -21.41138 -20.59031 -20.00844 -18.15308 -17.52414 -17.02313 -16.99304 -16.91785 -16.66709 -16.32205 -15.86295 -15.74367 -15.41315 -15.11271 -14.85291 -14.02258 -13.82862 -13.57884 -13.54553 -13.27802 -13.23183 -12.95374 -12.92605 -12.89244 -12.48475 -12.24493 -12.14492 -11.57701 -11.55772 -11.47401 -10.79461 -10.57847 -10.38734 -10.19686 -10.09714 -8.52428 -6.02977 1.36967 1.42271 1.53092 1.53336 1.88953 1.99403 2.30681 2.93564 3.09253 3.14716 3.47752 3.56346 3.75187 3.98311 4.02645 4.20769 4.26584 4.37650 4.39037 4.51955 4.60872 4.64203 4.69059 4.77862 4.84065 4.93857 5.06058 5.07800 5.16658 5.22832 5.30653 5.36998 5.89735 6.21862 6.42969 6.49853 7.01526 7.12545 7.42056 7.91766 8.64221 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037633 B = 0.003784 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.853973 B = 7398.497475 C = 7498.799198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C 0.518 3.482 4 O -0.573 6.573 5 N -0.705 5.705 6 C 0.120 3.880 7 C 0.433 3.567 8 O -0.622 6.622 9 N -0.559 5.559 10 C -0.339 4.339 11 H 0.087 0.913 12 C -0.009 4.009 13 N -0.917 5.917 14 Si 0.997 3.003 15 H -0.269 1.269 16 H -0.272 1.272 17 H -0.269 1.269 18 C -0.123 4.123 19 C 0.045 3.955 20 O -0.395 6.395 21 C 0.053 3.947 22 C -0.140 4.140 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.413 0.587 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.398 0.602 30 H 0.280 0.720 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.049 0.951 35 H 0.026 0.974 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 -16.315 -6.043 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 C 0.306 3.694 4 O -0.453 6.453 5 N -0.358 5.358 6 C -0.008 4.008 7 C 0.220 3.780 8 O -0.510 6.510 9 N -0.194 5.194 10 C -0.468 4.468 11 H 0.105 0.895 12 C -0.210 4.210 13 N -0.556 5.556 14 Si 0.820 3.180 15 H -0.194 1.194 16 H -0.197 1.197 17 H -0.194 1.194 18 C -0.161 4.161 19 C -0.031 4.031 20 O -0.314 6.314 21 C -0.024 4.024 22 C -0.178 4.178 23 H 0.114 0.886 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.251 0.749 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.232 0.768 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.457 -16.346 -6.154 17.527 hybrid contribution -0.151 1.384 0.609 1.519 sum -1.608 -14.962 -5.545 16.037 Atomic orbital electron populations 1.21868 0.90318 1.04617 1.02718 1.20943 0.98798 0.89564 0.98814 1.21150 0.79388 0.88313 0.80595 1.90625 1.39363 1.78148 1.37127 1.45766 1.53039 1.10772 1.26267 1.20764 1.00094 0.83497 0.96408 1.20389 0.85404 0.83123 0.89130 1.90466 1.43781 1.67017 1.49780 1.41850 1.45270 1.09747 1.22571 1.19713 1.30810 0.94910 1.01354 0.89470 1.26131 0.96272 0.96829 1.01793 1.69675 1.36010 1.12674 1.37290 0.84927 0.78643 0.77106 0.77321 1.19449 1.19670 1.19420 1.22026 0.96211 1.01468 0.96352 1.22877 0.94711 0.98076 0.87460 1.87868 1.77720 1.51497 1.14311 1.22683 0.94417 0.96936 0.88324 1.22314 0.96175 1.02949 0.96316 0.88576 0.91940 0.92168 0.74880 0.89184 0.88962 0.76779 0.91046 0.90464 0.88099 0.87470 0.93323 0.95596 0.86727 0.89843 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.39 71.98 0.60 -1.78 16 2 C -0.08 -1.67 0.63 -52.81 -0.03 -1.71 16 3 C 0.52 15.32 5.15 87.66 0.45 15.78 16 4 O -0.57 -20.19 13.84 -3.06 -0.04 -20.23 16 5 N -0.70 -22.40 5.30 -466.78 -2.48 -24.88 16 6 C 0.12 4.34 6.15 85.63 0.53 4.87 16 7 C 0.43 19.67 7.85 87.66 0.69 20.36 16 8 O -0.62 -31.46 15.24 -3.05 -0.05 -31.50 16 9 N -0.56 -27.85 5.29 -306.98 -1.62 -29.47 16 10 C -0.34 -18.47 9.68 84.04 0.81 -17.66 16 11 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 12 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 13 N -0.92 -48.46 13.05 21.66 0.28 -48.17 16 14 Si 1.00 41.30 29.55 68.60 2.03 43.33 16 15 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 18 C -0.12 -2.45 4.56 30.68 0.14 -2.31 16 19 C 0.05 1.06 6.55 72.01 0.47 1.53 16 20 O -0.39 -9.85 10.77 -148.98 -1.60 -11.45 16 21 C 0.05 1.20 6.62 72.01 0.48 1.68 16 22 C -0.14 -2.66 4.86 30.69 0.15 -2.51 16 23 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 1.15 7.56 -2.39 -0.02 1.13 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.41 12.90 6.27 -92.71 -0.58 12.32 16 27 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 30 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.08 1.60 8.03 -2.39 -0.02 1.58 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.43 5.80 -2.39 -0.01 1.42 16 35 H 0.03 0.70 7.38 -2.39 -0.02 0.69 16 36 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 1.58 7.52 -2.39 -0.02 1.56 16 38 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.83 311.36 1.05 -63.78 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -0.23 Total: 40.37 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 4.76 Total: 18.22 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.82 Total: -102.52 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -1.69 Total: -63.18 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -64.83 1.05 -63.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329568051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.374 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds