Wall clock time and date at job start Mon Mar 30 2020 00:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99410 * 2 1 4 4 H 1.48508 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47242 * 299.99915 * 3 2 1 6 6 H 1.48494 * 109.47552 * 60.00047 * 3 2 1 7 7 C 1.37869 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99828 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00027 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 9 14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 10 15 15 C 1.52999 * 109.47528 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47306 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47306 * 179.97438 * 16 15 14 18 18 H 1.08997 * 110.32523 * 54.29603 * 17 16 15 19 19 C 1.54487 * 110.36754 * 176.54044 * 17 16 15 20 20 C 1.54782 * 102.05064 * 134.12846 * 19 17 16 21 21 O 1.45833 * 104.49254 * 333.25960 * 20 19 17 22 22 C 1.34060 * 109.90628 * 30.53786 * 21 20 19 23 23 O 1.20832 * 125.09237 * 159.16534 * 22 21 20 24 24 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47477 * 59.99650 * 9 7 2 26 26 H 1.08997 * 109.47150 * 299.99545 * 9 7 2 27 27 H 0.97000 * 120.00410 * 0.02562 * 10 9 7 28 28 H 0.97000 * 120.00112 * 359.73180 * 13 11 10 29 29 H 1.09009 * 109.46712 * 300.00517 * 14 13 11 30 30 H 1.08998 * 109.47207 * 59.99494 * 14 13 11 31 31 H 1.09003 * 109.46366 * 299.99640 * 15 14 13 32 32 H 1.08993 * 109.47533 * 59.99613 * 15 14 13 33 33 H 1.09000 * 109.46924 * 300.00089 * 16 15 14 34 34 H 1.09007 * 109.47220 * 59.99210 * 16 15 14 35 35 H 1.09000 * 110.86901 * 252.34409 * 19 17 16 36 36 H 1.09001 * 110.87249 * 16.01805 * 19 17 16 37 37 H 1.08997 * 110.46588 * 214.47459 * 20 19 17 38 38 H 1.09001 * 110.46570 * 92.04284 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5586 -5.1055 0.0011 13 7 2.6299 -5.9076 0.0067 14 6 2.1417 -7.2889 0.0133 15 6 3.3317 -8.2505 0.0194 16 6 2.8218 -9.6930 0.0256 17 6 4.0119 -10.6546 0.0311 18 1 4.6805 -10.4247 0.8606 19 6 3.5214 -12.1165 0.1249 20 6 4.3772 -12.8146 -0.9596 21 8 4.6887 -11.7578 -1.9150 22 6 4.7575 -10.5773 -1.2835 23 8 5.3293 -9.5983 -1.7013 24 1 -0.4851 0.8399 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 3.1569 -3.4353 0.0009 28 1 3.5836 -5.7303 0.0064 29 1 1.5355 -7.4557 0.9038 30 1 1.5366 -7.4646 -0.8761 31 1 3.9381 -8.0837 -0.8710 32 1 3.9364 -8.0746 0.9090 33 1 2.2152 -9.8600 0.9157 34 1 2.2173 -9.8685 -0.8643 35 1 3.7268 -12.5325 1.1112 36 1 2.4601 -12.1861 -0.1137 37 1 3.8072 -13.6084 -1.4423 38 1 5.2923 -13.2154 -0.5234 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330439237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:32 Heat of formation + Delta-G solvation = -131.510726 kcal Electronic energy + Delta-G solvation = -19844.110658 eV Core-core repulsion = 16493.133761 eV Total energy + Delta-G solvation = -3350.976897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45113 -39.11780 -37.81420 -36.29965 -34.36070 -33.86550 -32.31322 -31.44469 -28.68519 -27.00911 -24.97618 -23.02109 -22.55415 -21.62077 -20.85437 -19.99119 -17.95309 -17.85559 -17.29778 -16.46715 -15.97982 -15.66932 -15.56839 -14.67483 -14.62161 -14.26428 -14.22739 -13.81003 -13.58555 -13.17238 -12.98218 -12.69822 -12.53663 -11.92546 -11.87634 -11.81185 -11.54984 -11.31214 -11.09660 -10.99493 -10.87503 -10.85390 -10.26018 -10.21580 -9.34525 -9.30063 -8.71744 -8.60707 -7.68543 -6.11028 -4.17170 1.71240 2.82849 3.27335 3.33053 3.36274 3.41737 3.53075 3.74979 4.03529 4.04256 4.27409 4.37277 4.57112 4.65739 4.84185 4.92123 5.04156 5.14017 5.14451 5.25027 5.31150 5.36118 5.46728 5.55924 5.75222 6.08125 6.14720 6.35100 6.95856 7.12910 7.19798 7.58594 7.61998 7.63043 7.97231 8.10678 8.82508 9.01864 9.39966 9.54445 10.99367 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.048283 B = 0.002568 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.770106 B =10900.324978 C =11279.084219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.603 6.603 13 N -0.758 5.758 14 C 0.144 3.856 15 C -0.142 4.142 16 C -0.098 4.098 17 C -0.153 4.153 18 H 0.117 0.883 19 C -0.154 4.154 20 C 0.052 3.948 21 O -0.349 6.349 22 C 0.483 3.517 23 O -0.445 6.445 24 H 0.265 0.735 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.386 0.614 28 H 0.392 0.608 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.914 -27.264 2.042 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.383 5.383 11 C 0.392 3.608 12 O -0.483 6.483 13 N -0.416 5.416 14 C 0.019 3.981 15 C -0.180 4.180 16 C -0.136 4.136 17 C -0.173 4.173 18 H 0.135 0.865 19 C -0.191 4.191 20 C -0.022 4.022 21 O -0.266 6.266 22 C 0.322 3.678 23 O -0.328 6.328 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.218 0.782 28 H 0.225 0.775 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.907 -26.871 1.612 28.354 hybrid contribution 1.261 1.003 0.154 1.618 sum 10.167 -25.868 1.766 27.850 Atomic orbital electron populations 1.69990 1.06080 1.27103 1.49197 1.24952 0.94920 0.99413 0.94841 0.86356 0.79817 0.82991 0.77691 1.19668 1.20830 1.20839 1.21276 0.93317 0.90453 1.52776 0.91896 1.18976 0.87817 0.81129 0.97573 1.45713 1.10766 1.04459 1.77313 1.16162 0.85208 0.81094 0.78363 1.90861 1.14297 1.84320 1.58803 1.45141 1.08851 1.05192 1.82380 1.20994 0.95444 0.79839 1.01868 1.21944 0.98460 0.93495 1.04072 1.21379 0.95251 0.93136 1.03859 1.22611 0.99693 0.97160 0.97821 0.86469 1.23122 1.01784 0.93622 1.00597 1.24179 1.00165 0.88979 0.88875 1.87051 1.83102 1.18650 1.37769 1.23145 0.77158 0.82177 0.85278 1.90731 1.40009 1.31661 1.70349 0.92558 0.95776 0.95769 0.78159 0.77519 0.92122 0.92182 0.89824 0.91069 0.89708 0.90849 0.88297 0.88734 0.87083 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.54 -15.11 9.28 -34.44 -0.32 -15.43 16 8 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 9 C 0.27 7.39 5.43 -5.19 -0.03 7.36 16 10 N -0.73 -16.45 5.55 -66.41 -0.37 -16.82 16 11 C 0.69 15.12 8.57 -86.92 -0.74 14.37 16 12 O -0.60 -15.77 16.34 5.28 0.09 -15.69 16 13 N -0.76 -12.15 5.56 -65.22 -0.36 -12.51 16 14 C 0.14 1.92 5.67 -4.04 -0.02 1.90 16 15 C -0.14 -1.38 5.13 -26.73 -0.14 -1.51 16 16 C -0.10 -0.69 4.55 -26.73 -0.12 -0.81 16 17 C -0.15 -0.90 3.01 -90.68 -0.27 -1.17 16 18 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 19 C -0.15 -0.44 6.81 -25.01 -0.17 -0.61 16 20 C 0.05 0.19 7.91 38.10 0.30 0.49 16 21 O -0.35 -3.05 11.05 -38.47 -0.43 -3.48 16 22 C 0.48 4.69 7.76 36.31 0.28 4.97 16 23 O -0.45 -6.06 16.09 -18.42 -0.30 -6.35 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.39 7.47 8.34 -40.82 -0.34 7.13 16 28 H 0.39 5.17 8.49 -40.82 -0.35 4.82 16 29 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.96 6.20 -51.93 -0.32 0.64 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.09 0.23 7.81 -51.93 -0.41 -0.17 16 37 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -36.97 324.61 -7.69 -44.66 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.60 Total: 3.74 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -1.33 Total: 11.22 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.00 Total: -55.29 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.64 Total: -25.52 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.97 -7.69 -44.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330439237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.853 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds