Wall clock time and date at job start Mon Mar 30 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.50702 * 109.46412 * 120.00012 * 2 1 3 5 5 H 1.07997 * 119.99804 * 120.00922 * 4 2 1 6 6 C 1.37880 * 120.00199 * 299.99656 * 4 2 1 7 7 N 1.31518 * 119.99916 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99781 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.46950 * 90.00280 * 8 6 4 10 10 H 1.48507 * 109.46779 * 209.99873 * 8 6 4 11 11 H 1.48498 * 109.47243 * 329.99891 * 8 6 4 12 12 C 1.50701 * 109.47262 * 239.99890 * 2 1 3 13 13 O 1.21271 * 119.99825 * 261.97542 * 12 2 1 14 14 N 1.34773 * 119.99814 * 81.97436 * 12 2 1 15 15 C 1.47161 * 120.98288 * 4.38185 * 14 12 2 16 16 C 1.53705 * 108.16162 * 129.42946 * 15 14 12 17 17 O 1.42963 * 109.14947 * 52.53536 * 16 15 14 18 18 C 1.42959 * 114.16969 * 297.29135 * 17 16 15 19 19 H 1.09000 * 109.50909 * 302.65354 * 18 17 16 20 20 C 1.52998 * 109.55943 * 182.52605 * 18 17 16 21 21 C 1.50705 * 109.47003 * 65.22595 * 20 18 17 22 22 N 1.34769 * 120.00026 * 180.02562 * 21 20 18 23 23 O 1.21281 * 119.99745 * 0.02562 * 21 20 18 24 24 C 1.47147 * 120.98159 * 184.65893 * 14 12 2 25 25 H 1.09002 * 109.46698 * 66.84583 * 1 2 3 26 26 H 1.08993 * 109.47566 * 186.84821 * 1 2 3 27 27 H 1.09000 * 109.47204 * 306.85253 * 1 2 3 28 28 H 0.96995 * 119.99655 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.67647 * 249.20941 * 15 14 12 30 30 H 1.09003 * 109.67786 * 9.76319 * 15 14 12 31 31 H 1.09001 * 109.66187 * 292.57599 * 16 15 14 32 32 H 1.08998 * 109.48899 * 172.39793 * 16 15 14 33 33 H 1.08999 * 109.47488 * 185.22556 * 20 18 17 34 34 H 1.08997 * 109.46918 * 305.23076 * 20 18 17 35 35 H 0.97001 * 120.00139 * 359.97438 * 22 21 20 36 36 H 0.97000 * 120.00416 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.68271 * 350.24022 * 24 14 12 38 38 H 1.09002 * 109.68001 * 110.79199 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 2.1378 -0.8591 3.5567 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9759 1.9951 3.9069 11 1 0.8471 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.3728 -1.8725 -1.1632 14 7 2.1034 -0.0543 -2.4056 15 6 1.7873 1.3803 -2.4925 16 6 2.9417 2.0816 -3.2261 17 8 3.1874 1.4100 -4.4640 18 6 3.6082 0.0514 -4.3194 19 1 4.5094 0.0126 -3.7075 20 6 3.9006 -0.5438 -5.6982 21 6 5.0776 0.1686 -6.3135 22 7 5.5179 -0.1891 -7.5359 23 8 5.6284 1.0638 -5.7084 24 6 2.4934 -0.7527 -3.6406 25 1 -0.3633 0.4041 -0.9449 26 1 -0.3634 -1.0202 0.1225 27 1 -0.3633 0.6163 0.8223 28 1 1.9031 -0.5279 4.4376 29 1 0.8588 1.5186 -3.0462 30 1 1.6826 1.7945 -1.4897 31 1 3.8405 2.0501 -2.6103 32 1 2.6709 3.1190 -3.4223 33 1 4.1313 -1.6041 -5.5948 34 1 3.0272 -0.4227 -6.3389 35 1 5.0776 -0.9054 -8.0196 36 1 6.2757 0.2691 -7.9318 37 1 2.8564 -1.7516 -3.3986 38 1 1.6347 -0.8254 -4.3080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331747911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:49 Heat of formation + Delta-G solvation = -111.180117 kcal Electronic energy + Delta-G solvation = -21518.262336 eV Core-core repulsion = 18168.167041 eV Total energy + Delta-G solvation = -3350.095295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23621 -39.30886 -37.81348 -34.31332 -33.95287 -33.82295 -32.86276 -31.18732 -28.86282 -26.92895 -25.18311 -23.54940 -22.94854 -21.14456 -20.45786 -18.57472 -17.53084 -17.07278 -16.91426 -16.65816 -16.01845 -15.54198 -15.08877 -14.89526 -14.68218 -14.47134 -14.15416 -13.60816 -13.29584 -13.10973 -12.55717 -12.41530 -12.25897 -12.11688 -11.71062 -11.56008 -11.22745 -10.99392 -10.64128 -10.55974 -10.30674 -10.08895 -9.92561 -9.84359 -9.65961 -9.12331 -8.72563 -8.59153 -8.15404 -6.07450 -4.07758 2.52746 3.19481 3.22824 3.28136 3.35214 3.44070 3.49152 3.71844 4.35957 4.59877 4.69671 4.98518 5.01831 5.09662 5.21285 5.25832 5.30256 5.44456 5.50836 5.57024 5.74681 5.86537 5.93105 6.05664 6.15022 6.31498 6.44047 6.56054 6.63093 6.86560 7.09154 7.13920 7.22219 7.52060 7.92719 8.11276 8.50749 8.99378 9.08659 9.51023 11.05608 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035026 B = 0.004543 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.221991 B = 6161.830658 C = 6374.900458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 H 0.048 0.952 4 C -0.506 4.506 5 H 0.089 0.911 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.268 1.268 12 C 0.535 3.465 13 O -0.531 6.531 14 N -0.630 5.630 15 C 0.072 3.928 16 C 0.051 3.949 17 O -0.370 6.370 18 C 0.093 3.907 19 H 0.072 0.928 20 C -0.135 4.135 21 C 0.519 3.481 22 N -0.862 5.862 23 O -0.528 6.528 24 C 0.084 3.916 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.400 0.600 36 H 0.399 0.601 37 H 0.099 0.901 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 3.884 -21.705 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 H 0.065 0.935 4 C -0.544 4.544 5 H 0.107 0.893 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.193 1.193 12 C 0.326 3.674 13 O -0.405 6.405 14 N -0.367 5.367 15 C -0.051 4.051 16 C -0.026 4.026 17 O -0.289 6.289 18 C 0.033 3.967 19 H 0.090 0.910 20 C -0.175 4.175 21 C 0.303 3.697 22 N -0.427 5.427 23 O -0.403 6.403 24 C -0.040 4.040 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.228 0.772 36 H 0.230 0.770 37 H 0.117 0.883 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.866 3.866 -21.041 21.410 hybrid contribution -0.564 0.574 -0.024 0.805 sum 0.302 4.440 -21.064 21.529 Atomic orbital electron populations 1.22072 0.96857 1.02059 0.99005 1.19336 0.93457 0.97254 0.92366 0.93482 1.20887 1.32331 1.13876 0.87278 0.89267 1.24965 0.95752 0.96616 0.95696 1.69881 1.45340 1.40148 0.97892 0.86906 0.80842 0.83731 0.77050 1.20436 1.22202 1.19285 1.21350 0.75640 0.87037 0.83394 1.90566 1.47662 1.17694 1.84555 1.48344 1.70683 1.09741 1.07949 1.22550 0.98092 0.81484 1.03008 1.23027 0.97463 0.96219 0.85926 1.87900 1.87809 1.23887 1.29290 1.22130 0.96940 0.82962 0.94628 0.91034 1.21675 0.97794 1.00990 0.97045 1.20537 0.84756 0.83202 0.81180 1.43898 1.37437 1.41405 1.19924 1.90783 1.57897 1.30093 1.61485 1.22120 0.97370 0.97843 0.86642 0.94708 0.92003 0.93336 0.92502 0.91132 0.87954 0.92328 0.87964 0.87070 0.87725 0.77225 0.77025 0.88277 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.54 37.16 0.32 -2.69 16 2 C 0.00 -0.06 1.44 -92.92 -0.13 -0.20 16 3 H 0.05 1.06 5.27 -51.93 -0.27 0.78 16 4 C -0.51 -14.66 8.92 -34.44 -0.31 -14.97 16 5 H 0.09 2.95 7.21 -52.49 -0.38 2.57 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -27.64 13.96 55.43 0.77 -26.86 16 8 Si 0.88 21.23 24.30 -169.99 -4.13 17.10 16 9 H -0.28 -6.48 6.93 56.52 0.39 -6.08 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.27 -5.89 6.53 56.52 0.37 -5.52 16 12 C 0.53 11.97 6.83 -10.99 -0.08 11.89 16 13 O -0.53 -13.70 15.20 5.56 0.08 -13.62 16 14 N -0.63 -11.03 3.01 -172.02 -0.52 -11.55 16 15 C 0.07 1.04 6.19 -3.32 -0.02 1.02 16 16 C 0.05 0.69 7.00 37.52 0.26 0.95 16 17 O -0.37 -5.33 9.64 -49.33 -0.48 -5.81 16 18 C 0.09 1.24 2.32 -26.58 -0.06 1.18 16 19 H 0.07 1.13 7.95 -51.93 -0.41 0.71 16 20 C -0.13 -1.23 5.42 -27.88 -0.15 -1.38 16 21 C 0.52 5.63 7.98 -10.99 -0.09 5.54 16 22 N -0.86 -5.44 8.87 31.22 0.28 -5.17 16 23 O -0.53 -8.42 16.27 -8.54 -0.14 -8.56 16 24 C 0.08 1.21 5.94 -3.54 -0.02 1.18 16 25 H 0.03 0.60 7.80 -51.93 -0.41 0.20 16 26 H 0.06 1.36 8.13 -51.93 -0.42 0.93 16 27 H 0.05 1.04 3.49 -51.93 -0.18 0.85 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.53 5.52 -51.93 -0.29 1.24 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 1.17 8.83 -40.82 -0.36 0.81 16 36 H 0.40 2.27 8.93 -40.82 -0.36 1.90 16 37 H 0.10 1.52 7.07 -51.93 -0.37 1.15 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -37.54 305.21 -5.07 -42.61 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.17 Total: 2.74 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.37 Total: 4.51 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.53 Total: -43.58 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.53 Total: -27.99 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.13 Total: 17.10 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -37.54 -5.07 -42.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331747911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.571 kcal (2) G-P(sol) polarization free energy of solvation -37.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds