Wall clock time and date at job start Mon Mar 30 2020 02:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.50702 * 109.46412 * 120.00012 * 2 1 3 5 5 H 1.07997 * 119.99804 * 120.00922 * 4 2 1 6 6 C 1.37880 * 120.00199 * 299.99656 * 4 2 1 7 7 N 1.31518 * 119.99916 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99781 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.46950 * 90.00280 * 8 6 4 10 10 H 1.48507 * 109.46779 * 209.99873 * 8 6 4 11 11 H 1.48498 * 109.47243 * 329.99891 * 8 6 4 12 12 C 1.50701 * 109.47262 * 239.99890 * 2 1 3 13 13 O 1.21271 * 119.99825 * 261.97542 * 12 2 1 14 14 N 1.34773 * 119.99814 * 81.97436 * 12 2 1 15 15 C 1.47161 * 120.98288 * 4.38185 * 14 12 2 16 16 C 1.53705 * 108.16162 * 129.42946 * 15 14 12 17 17 O 1.42963 * 109.14947 * 52.53536 * 16 15 14 18 18 C 1.42959 * 114.16969 * 297.29135 * 17 16 15 19 19 H 1.09000 * 109.50909 * 302.65354 * 18 17 16 20 20 C 1.52998 * 109.55943 * 182.52605 * 18 17 16 21 21 C 1.50705 * 109.47003 * 65.22595 * 20 18 17 22 22 N 1.34769 * 120.00026 * 180.02562 * 21 20 18 23 23 O 1.21281 * 119.99745 * 0.02562 * 21 20 18 24 24 C 1.47147 * 120.98159 * 184.65893 * 14 12 2 25 25 H 1.09002 * 109.46698 * 66.84583 * 1 2 3 26 26 H 1.08993 * 109.47566 * 186.84821 * 1 2 3 27 27 H 1.09000 * 109.47204 * 306.85253 * 1 2 3 28 28 H 0.96995 * 119.99655 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.67647 * 249.20941 * 15 14 12 30 30 H 1.09003 * 109.67786 * 9.76319 * 15 14 12 31 31 H 1.09001 * 109.66187 * 292.57599 * 16 15 14 32 32 H 1.08998 * 109.48899 * 172.39793 * 16 15 14 33 33 H 1.08999 * 109.47488 * 185.22556 * 20 18 17 34 34 H 1.08997 * 109.46918 * 305.23076 * 20 18 17 35 35 H 0.97001 * 120.00139 * 359.97438 * 22 21 20 36 36 H 0.97000 * 120.00416 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.68271 * 350.24022 * 24 14 12 38 38 H 1.09002 * 109.68001 * 110.79199 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 2.1378 -0.8591 3.5567 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9759 1.9951 3.9069 11 1 0.8471 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.3728 -1.8725 -1.1632 14 7 2.1034 -0.0543 -2.4056 15 6 1.7873 1.3803 -2.4925 16 6 2.9417 2.0816 -3.2261 17 8 3.1874 1.4100 -4.4640 18 6 3.6082 0.0514 -4.3194 19 1 4.5094 0.0126 -3.7075 20 6 3.9006 -0.5438 -5.6982 21 6 5.0776 0.1686 -6.3135 22 7 5.5179 -0.1891 -7.5359 23 8 5.6284 1.0638 -5.7084 24 6 2.4934 -0.7527 -3.6406 25 1 -0.3633 0.4041 -0.9449 26 1 -0.3634 -1.0202 0.1225 27 1 -0.3633 0.6163 0.8223 28 1 1.9031 -0.5279 4.4376 29 1 0.8588 1.5186 -3.0462 30 1 1.6826 1.7945 -1.4897 31 1 3.8405 2.0501 -2.6103 32 1 2.6709 3.1190 -3.4223 33 1 4.1313 -1.6041 -5.5948 34 1 3.0272 -0.4227 -6.3389 35 1 5.0776 -0.9054 -8.0196 36 1 6.2757 0.2691 -7.9318 37 1 2.8564 -1.7516 -3.3986 38 1 1.6347 -0.8254 -4.3080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331747911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:48 Heat of formation + Delta-G solvation = -143.641276 kcal Electronic energy + Delta-G solvation = -21519.669958 eV Core-core repulsion = 18168.167041 eV Total energy + Delta-G solvation = -3351.502917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48440 -40.42503 -39.14857 -35.97487 -35.60470 -34.65581 -33.95218 -33.14707 -29.91249 -28.20109 -27.19034 -24.71828 -24.51577 -22.42463 -21.31869 -20.07370 -18.97683 -18.28988 -17.96305 -17.69574 -17.60878 -17.14305 -16.36059 -16.14004 -15.94551 -15.64109 -15.50298 -14.96654 -14.91808 -14.42180 -14.20682 -14.01580 -13.51714 -13.29880 -13.00759 -12.88074 -12.74530 -12.54428 -12.25220 -12.17120 -11.71044 -11.47858 -11.24376 -11.11947 -11.00798 -10.77819 -10.58269 -10.44009 -9.51361 -8.29351 -6.37628 1.33020 1.39163 1.50580 1.72868 1.74945 1.96159 2.33374 2.63543 2.74132 3.04294 3.66172 3.74746 3.83175 4.02192 4.04959 4.15763 4.28854 4.36707 4.47043 4.52138 4.58433 4.63750 4.65891 4.72307 4.82781 4.86519 4.93660 5.00673 5.41403 5.44809 5.57135 5.96411 6.13774 6.18604 6.43683 6.53954 6.74589 7.22079 7.36151 7.43935 8.88541 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035026 B = 0.004543 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.221991 B = 6161.830658 C = 6374.900458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.005 4.005 3 H 0.068 0.932 4 C -0.523 4.523 5 H 0.024 0.976 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.958 3.042 9 H -0.261 1.261 10 H -0.297 1.297 11 H -0.226 1.226 12 C 0.530 3.470 13 O -0.583 6.583 14 N -0.624 5.624 15 C 0.067 3.933 16 C 0.051 3.949 17 O -0.374 6.374 18 C 0.095 3.905 19 H 0.035 0.965 20 C -0.128 4.128 21 C 0.514 3.486 22 N -0.839 5.839 23 O -0.589 6.589 24 C 0.083 3.917 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.268 0.732 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.036 0.964 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.419 0.581 36 H 0.405 0.595 37 H 0.083 0.917 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 6.182 -24.729 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.086 0.914 4 C -0.561 4.561 5 H 0.042 0.958 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.782 3.218 9 H -0.186 1.186 10 H -0.225 1.225 11 H -0.149 1.149 12 C 0.321 3.679 13 O -0.462 6.462 14 N -0.358 5.358 15 C -0.055 4.055 16 C -0.027 4.027 17 O -0.293 6.293 18 C 0.036 3.964 19 H 0.053 0.947 20 C -0.168 4.168 21 C 0.299 3.701 22 N -0.403 5.403 23 O -0.469 6.469 24 C -0.040 4.040 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.054 0.946 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.251 0.749 36 H 0.236 0.764 37 H 0.102 0.898 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.424 6.162 -24.187 25.000 hybrid contribution 0.265 -0.239 0.827 0.900 sum -1.159 5.923 -23.360 24.127 Atomic orbital electron populations 1.21957 0.94290 1.01481 1.01605 1.19281 0.95451 0.97349 0.90597 0.91438 1.21040 1.31975 1.12588 0.90468 0.95805 1.26038 0.97340 1.00820 0.94670 1.70076 1.47488 1.42805 0.98775 0.85734 0.78806 0.78979 0.78292 1.18612 1.22504 1.14897 1.21162 0.75642 0.86453 0.84685 1.90543 1.50210 1.19878 1.85539 1.48313 1.68931 1.11184 1.07417 1.22851 0.99866 0.79121 1.03636 1.23131 0.96268 0.97820 0.85456 1.87911 1.87596 1.24207 1.29544 1.22096 0.94873 0.82821 0.96614 0.94673 1.21722 0.98412 1.01796 0.94855 1.20844 0.84800 0.82507 0.81908 1.43698 1.36978 1.41162 1.18473 1.90765 1.59924 1.32953 1.63268 1.22344 0.98998 0.96960 0.85685 0.90126 0.93855 0.92956 0.92301 0.87685 0.88143 0.94572 0.84692 0.84364 0.84524 0.74902 0.76400 0.89848 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.54 71.98 0.61 -4.74 16 2 C -0.01 -0.25 1.44 -12.28 -0.02 -0.27 16 3 H 0.07 2.87 5.27 -2.39 -0.01 2.85 16 4 C -0.52 -31.63 8.92 25.60 0.23 -31.40 16 5 H 0.02 1.70 7.21 -2.91 -0.02 1.68 16 6 C 0.01 0.47 5.45 84.65 0.46 0.93 16 7 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 8 Si 0.96 42.80 24.30 68.60 1.67 44.47 16 9 H -0.26 -10.93 6.93 99.48 0.69 -10.24 16 10 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.23 -8.55 6.53 99.48 0.65 -7.90 16 12 C 0.53 23.88 6.83 87.66 0.60 24.48 16 13 O -0.58 -31.62 15.20 -3.00 -0.05 -31.66 16 14 N -0.62 -20.82 3.01 -816.55 -2.46 -23.28 16 15 C 0.07 1.70 6.19 86.49 0.54 2.23 16 16 C 0.05 1.24 7.00 72.22 0.51 1.74 16 17 O -0.37 -9.88 9.64 -135.50 -1.31 -11.18 16 18 C 0.10 2.42 2.32 30.69 0.07 2.49 16 19 H 0.04 1.14 7.95 -2.39 -0.02 1.12 16 20 C -0.13 -1.98 5.42 29.85 0.16 -1.82 16 21 C 0.51 10.24 7.98 87.66 0.70 10.94 16 22 N -0.84 -8.40 8.87 -173.54 -1.54 -9.94 16 23 O -0.59 -18.70 16.27 10.45 0.17 -18.53 16 24 C 0.08 2.23 5.94 86.35 0.51 2.74 16 25 H 0.08 2.42 7.80 -2.39 -0.02 2.41 16 26 H 0.04 1.84 8.13 -2.39 -0.02 1.82 16 27 H 0.05 2.01 3.49 -2.39 -0.01 2.01 16 28 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 2.60 5.52 -2.39 -0.01 2.58 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.42 0.97 8.83 -92.71 -0.82 0.15 16 36 H 0.41 3.72 8.93 -92.71 -0.83 2.89 16 37 H 0.08 2.55 7.07 -2.38 -0.02 2.53 16 38 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -89.85 305.21 0.54 -89.31 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -0.62 Total: 14.61 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 4.37 Total: 7.33 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -3.70 Total: -94.35 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -1.18 Total: -61.37 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.67 Total: 44.47 kcal Total: -89.85 0.54 -89.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331747911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.330 kcal (2) G-P(sol) polarization free energy of solvation -89.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds