Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47380 * 2 1 4 4 C 1.50704 * 109.47182 * 240.00003 * 2 1 3 5 5 H 1.07999 * 119.99972 * 240.00172 * 4 2 1 6 6 C 1.37880 * 119.99752 * 59.99974 * 4 2 1 7 7 N 1.31514 * 120.00171 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99772 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47204 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47083 * 119.99944 * 8 6 4 11 11 H 1.48500 * 109.47166 * 239.99664 * 8 6 4 12 12 C 1.50698 * 109.47033 * 120.00157 * 2 1 3 13 13 O 1.21288 * 120.00050 * 95.11422 * 12 2 1 14 14 N 1.34776 * 120.00207 * 275.10952 * 12 2 1 15 15 C 1.47154 * 120.97757 * 355.20036 * 14 12 2 16 16 C 1.53301 * 108.37932 * 129.44252 * 15 14 12 17 17 O 1.42960 * 109.22244 * 52.30559 * 16 15 14 18 18 C 1.42964 * 114.16449 * 297.41676 * 17 16 15 19 19 H 1.08994 * 109.55763 * 302.63172 * 18 17 16 20 20 C 1.53008 * 109.51306 * 182.50573 * 18 17 16 21 21 C 1.50700 * 109.46939 * 65.24917 * 20 18 17 22 22 N 1.34773 * 119.99715 * 180.02562 * 21 20 18 23 23 O 1.21281 * 119.99996 * 0.02562 * 21 20 18 24 24 C 1.47147 * 120.98495 * 175.18246 * 14 12 2 25 25 H 1.08993 * 109.47048 * 64.89991 * 1 2 3 26 26 H 1.08999 * 109.47370 * 184.89590 * 1 2 3 27 27 H 1.08996 * 109.47244 * 304.89733 * 1 2 3 28 28 H 0.96995 * 120.00031 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.68472 * 249.16636 * 15 14 12 30 30 H 1.08998 * 109.68188 * 9.68686 * 15 14 12 31 31 H 1.08997 * 109.50920 * 172.22561 * 16 15 14 32 32 H 1.08994 * 109.51272 * 292.32649 * 16 15 14 33 33 H 1.08999 * 109.46851 * 185.25363 * 20 18 17 34 34 H 1.09005 * 109.46867 * 305.25440 * 20 18 17 35 35 H 0.97003 * 120.00152 * 0.02562 * 22 21 20 36 36 H 0.97003 * 119.99908 * 180.02562 * 22 21 20 37 37 H 1.09000 * 109.68389 * 110.83573 * 24 14 12 38 38 H 1.09005 * 109.68179 * 350.27946 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1454 -2.2877 -3.6038 10 1 1.1660 -1.5866 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 6 2.0323 -0.7104 1.2304 13 8 2.3227 -1.8867 1.1754 14 7 2.1589 -0.0387 2.3920 15 6 1.9135 1.4107 2.4594 16 6 0.9443 1.6836 3.6153 17 8 1.4452 1.0685 4.8047 18 6 1.5463 -0.3556 4.7291 19 1 0.5698 -0.7787 4.4936 20 6 2.0311 -0.9055 6.0721 21 6 0.9896 -0.6411 7.1286 22 7 1.2016 -1.0398 8.3985 23 8 -0.0394 -0.0696 6.8362 24 6 2.5462 -0.7329 3.6302 25 1 -0.3633 0.4359 -0.9306 26 1 -0.3634 -1.0239 0.0877 27 1 -0.3633 0.5879 0.8428 28 1 0.7081 1.1608 -3.4844 29 1 2.8529 1.9343 2.6365 30 1 1.4738 1.7525 1.5225 31 1 0.8567 2.7588 3.7708 32 1 -0.0348 1.2695 3.3750 33 1 2.1973 -1.9794 5.9862 34 1 2.9637 -0.4146 6.3503 35 1 2.0247 -1.4966 8.6324 36 1 0.5310 -0.8699 9.0785 37 1 3.5494 -0.4252 3.9253 38 1 2.5249 -1.8108 3.4689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331747914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = -121.235194 kcal Electronic energy + Delta-G solvation = -21481.306768 eV Core-core repulsion = 18130.775452 eV Total energy + Delta-G solvation = -3350.531316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.15222 -39.22270 -37.68787 -34.16345 -33.90001 -33.78961 -32.82609 -30.44740 -28.76634 -26.74836 -25.19367 -23.44049 -22.65834 -21.11725 -20.42645 -18.50623 -17.49815 -16.90245 -16.71672 -16.44742 -16.02402 -15.24470 -14.93492 -14.73292 -14.61284 -14.44166 -14.15102 -13.57645 -12.97055 -12.88995 -12.55881 -12.29885 -12.04048 -11.53173 -11.39161 -11.17489 -11.01226 -10.67965 -10.65607 -10.48464 -10.29678 -10.06692 -10.00640 -9.88918 -9.79606 -8.99511 -8.63207 -8.30730 -8.03470 -6.05262 -4.08972 2.55084 3.25558 3.31109 3.38683 3.45492 3.56402 3.65501 3.79963 4.45022 4.64181 4.76040 5.07365 5.09961 5.19005 5.27224 5.33402 5.41095 5.57031 5.59567 5.72835 5.88400 5.98934 6.15124 6.20951 6.58029 6.62929 6.84423 6.92827 7.01277 7.11762 7.29667 7.40484 7.75214 7.93848 8.07908 8.13517 8.34409 8.97263 9.15557 9.56056 11.01925 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041601 B = 0.004222 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.899787 B = 6630.469512 C = 6936.275475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.499 4.499 5 H 0.070 0.930 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.526 3.474 13 O -0.546 6.546 14 N -0.629 5.629 15 C 0.073 3.927 16 C 0.052 3.948 17 O -0.371 6.371 18 C 0.094 3.906 19 H 0.070 0.930 20 C -0.135 4.135 21 C 0.519 3.481 22 N -0.863 5.863 23 O -0.528 6.528 24 C 0.083 3.917 25 H 0.097 0.903 26 H 0.031 0.969 27 H 0.013 0.987 28 H 0.261 0.739 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.400 0.600 36 H 0.399 0.601 37 H 0.066 0.934 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 0.206 18.910 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.010 3.990 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.088 0.912 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.318 3.682 13 O -0.422 6.422 14 N -0.366 5.366 15 C -0.050 4.050 16 C -0.025 4.025 17 O -0.290 6.290 18 C 0.034 3.966 19 H 0.088 0.912 20 C -0.175 4.175 21 C 0.303 3.697 22 N -0.427 5.427 23 O -0.403 6.403 24 C -0.041 4.041 25 H 0.115 0.885 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.228 0.772 36 H 0.229 0.771 37 H 0.084 0.916 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.839 0.151 18.468 18.560 hybrid contribution 0.420 -0.615 -0.531 0.914 sum 2.258 -0.463 17.937 18.085 Atomic orbital electron populations 1.21714 0.96069 0.99284 1.01842 1.18909 0.94317 0.96699 0.89109 0.93361 1.21125 1.31080 1.12511 0.89057 0.91199 1.24940 0.95091 0.95060 0.99091 1.69864 1.36963 1.23072 1.23522 0.86398 0.78665 0.79752 0.82455 1.19593 1.20959 1.21013 1.22089 0.74777 0.87336 0.83983 1.90521 1.49826 1.17236 1.84569 1.48393 1.71339 1.08417 1.08440 1.22453 0.99884 0.81645 1.01031 1.22956 0.96426 0.98509 0.84647 1.87898 1.86029 1.18532 1.36500 1.22116 0.98859 0.82896 0.92700 0.91247 1.21680 0.99201 1.03394 0.93247 1.20548 0.87951 0.77670 0.83492 1.43903 1.24545 1.63563 1.10675 1.90780 1.28108 1.40289 1.81082 1.22093 0.97380 0.99687 0.84894 0.88478 0.95027 0.96813 0.92923 0.91360 0.87386 0.87996 0.92510 0.87165 0.87706 0.77231 0.77050 0.91607 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.92 37.16 0.33 -2.80 16 2 C 0.03 0.77 1.81 -92.92 -0.17 0.60 16 3 H 0.05 1.21 6.36 -51.93 -0.33 0.88 16 4 C -0.50 -14.19 8.33 -34.44 -0.29 -14.48 16 5 H 0.07 2.10 7.03 -52.49 -0.37 1.73 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 7 N -0.89 -24.96 11.29 55.43 0.63 -24.34 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.53 12.33 6.81 -10.99 -0.07 12.25 16 13 O -0.55 -14.36 15.30 5.55 0.08 -14.28 16 14 N -0.63 -11.75 3.02 -172.28 -0.52 -12.27 16 15 C 0.07 1.16 6.45 -3.53 -0.02 1.14 16 16 C 0.05 0.75 6.98 37.31 0.26 1.01 16 17 O -0.37 -5.61 9.64 -49.34 -0.48 -6.08 16 18 C 0.09 1.30 2.32 -26.58 -0.06 1.24 16 19 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 20 C -0.13 -1.29 5.41 -27.88 -0.15 -1.45 16 21 C 0.52 5.77 7.98 -10.99 -0.09 5.69 16 22 N -0.86 -5.63 8.87 31.22 0.28 -5.35 16 23 O -0.53 -8.54 16.27 -8.55 -0.14 -8.68 16 24 C 0.08 1.28 5.91 -3.54 -0.02 1.25 16 25 H 0.10 2.51 5.95 -51.93 -0.31 2.20 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.01 0.27 7.79 -51.93 -0.40 -0.13 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.11 1.81 5.21 -51.93 -0.27 1.54 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.40 1.27 8.83 -40.82 -0.36 0.91 16 36 H 0.40 2.33 8.93 -40.82 -0.36 1.96 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.54 7.12 -51.93 -0.37 1.17 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -35.49 311.93 -6.13 -41.61 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.28 Total: 1.99 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.38 Total: 5.99 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.38 Total: -41.96 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.53 Total: -29.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.49 -6.13 -41.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331747914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.621 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds