Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47380 * 2 1 4 4 C 1.50704 * 109.47182 * 240.00003 * 2 1 3 5 5 H 1.07999 * 119.99972 * 240.00172 * 4 2 1 6 6 C 1.37880 * 119.99752 * 59.99974 * 4 2 1 7 7 N 1.31514 * 120.00171 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99772 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47204 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47083 * 119.99944 * 8 6 4 11 11 H 1.48500 * 109.47166 * 239.99664 * 8 6 4 12 12 C 1.50698 * 109.47033 * 120.00157 * 2 1 3 13 13 O 1.21288 * 120.00050 * 95.11422 * 12 2 1 14 14 N 1.34776 * 120.00207 * 275.10952 * 12 2 1 15 15 C 1.47154 * 120.97757 * 355.20036 * 14 12 2 16 16 C 1.53301 * 108.37932 * 129.44252 * 15 14 12 17 17 O 1.42960 * 109.22244 * 52.30559 * 16 15 14 18 18 C 1.42964 * 114.16449 * 297.41676 * 17 16 15 19 19 H 1.08994 * 109.55763 * 302.63172 * 18 17 16 20 20 C 1.53008 * 109.51306 * 182.50573 * 18 17 16 21 21 C 1.50700 * 109.46939 * 65.24917 * 20 18 17 22 22 N 1.34773 * 119.99715 * 180.02562 * 21 20 18 23 23 O 1.21281 * 119.99996 * 0.02562 * 21 20 18 24 24 C 1.47147 * 120.98495 * 175.18246 * 14 12 2 25 25 H 1.08993 * 109.47048 * 64.89991 * 1 2 3 26 26 H 1.08999 * 109.47370 * 184.89590 * 1 2 3 27 27 H 1.08996 * 109.47244 * 304.89733 * 1 2 3 28 28 H 0.96995 * 120.00031 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.68472 * 249.16636 * 15 14 12 30 30 H 1.08998 * 109.68188 * 9.68686 * 15 14 12 31 31 H 1.08997 * 109.50920 * 172.22561 * 16 15 14 32 32 H 1.08994 * 109.51272 * 292.32649 * 16 15 14 33 33 H 1.08999 * 109.46851 * 185.25363 * 20 18 17 34 34 H 1.09005 * 109.46867 * 305.25440 * 20 18 17 35 35 H 0.97003 * 120.00152 * 0.02562 * 22 21 20 36 36 H 0.97003 * 119.99908 * 180.02562 * 22 21 20 37 37 H 1.09000 * 109.68389 * 110.83573 * 24 14 12 38 38 H 1.09005 * 109.68179 * 350.27946 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1454 -2.2877 -3.6038 10 1 1.1660 -1.5866 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 6 2.0323 -0.7104 1.2304 13 8 2.3227 -1.8867 1.1754 14 7 2.1589 -0.0387 2.3920 15 6 1.9135 1.4107 2.4594 16 6 0.9443 1.6836 3.6153 17 8 1.4452 1.0685 4.8047 18 6 1.5463 -0.3556 4.7291 19 1 0.5698 -0.7787 4.4936 20 6 2.0311 -0.9055 6.0721 21 6 0.9896 -0.6411 7.1286 22 7 1.2016 -1.0398 8.3985 23 8 -0.0394 -0.0696 6.8362 24 6 2.5462 -0.7329 3.6302 25 1 -0.3633 0.4359 -0.9306 26 1 -0.3634 -1.0239 0.0877 27 1 -0.3633 0.5879 0.8428 28 1 0.7081 1.1608 -3.4844 29 1 2.8529 1.9343 2.6365 30 1 1.4738 1.7525 1.5225 31 1 0.8567 2.7588 3.7708 32 1 -0.0348 1.2695 3.3750 33 1 2.1973 -1.9794 5.9862 34 1 2.9637 -0.4146 6.3503 35 1 2.0247 -1.4966 8.6324 36 1 0.5310 -0.8699 9.0785 37 1 3.5494 -0.4252 3.9253 38 1 2.5249 -1.8108 3.4689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331747914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = -149.135009 kcal Electronic energy + Delta-G solvation = -21482.516595 eV Core-core repulsion = 18130.775452 eV Total energy + Delta-G solvation = -3351.741143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44303 -40.38804 -39.11288 -35.92525 -35.59865 -34.64703 -33.92548 -32.41159 -29.91752 -28.08595 -27.29757 -24.65263 -24.33825 -22.49226 -21.31259 -20.06738 -18.53229 -18.25610 -18.05264 -17.64365 -17.54701 -16.96893 -16.19841 -16.19262 -15.89799 -15.64098 -15.58886 -14.86488 -14.69113 -14.30292 -14.22988 -13.55772 -13.24680 -13.03327 -12.94655 -12.81352 -12.64352 -12.58131 -12.28330 -12.26156 -12.05278 -11.70108 -11.12727 -11.06926 -10.99585 -10.62578 -10.57362 -10.26361 -9.49489 -8.17056 -6.28249 1.39256 1.41486 1.54252 1.73528 1.81823 2.00751 2.44226 2.64348 2.75023 3.12176 3.69320 3.77890 3.88903 4.04975 4.10215 4.18110 4.33261 4.50154 4.51367 4.63559 4.65878 4.66886 4.82310 4.83571 4.94140 4.98358 5.01204 5.37807 5.54567 5.68507 5.90133 5.97320 6.13728 6.15488 6.48517 6.54548 6.77793 7.33561 7.43079 7.44628 8.88785 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041601 B = 0.004222 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.899787 B = 6630.469512 C = 6936.275475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.027 3.973 3 H 0.047 0.953 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.271 1.271 12 C 0.524 3.476 13 O -0.585 6.585 14 N -0.625 5.625 15 C 0.071 3.929 16 C 0.056 3.944 17 O -0.375 6.375 18 C 0.097 3.903 19 H 0.041 0.959 20 C -0.128 4.128 21 C 0.515 3.485 22 N -0.838 5.838 23 O -0.588 6.588 24 C 0.082 3.918 25 H 0.077 0.923 26 H 0.017 0.983 27 H 0.041 0.959 28 H 0.266 0.734 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.041 0.959 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.419 0.581 36 H 0.405 0.595 37 H 0.093 0.907 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 0.600 20.392 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.006 3.994 3 H 0.065 0.935 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.196 1.196 12 C 0.315 3.685 13 O -0.465 6.465 14 N -0.359 5.359 15 C -0.052 4.052 16 C -0.021 4.021 17 O -0.293 6.293 18 C 0.037 3.963 19 H 0.059 0.941 20 C -0.168 4.168 21 C 0.300 3.700 22 N -0.403 5.403 23 O -0.468 6.468 24 C -0.040 4.040 25 H 0.096 0.904 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.060 0.940 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.251 0.749 36 H 0.236 0.764 37 H 0.111 0.889 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.941 0.564 20.030 20.253 hybrid contribution 0.100 -0.712 -0.901 1.153 sum 3.042 -0.149 19.130 19.371 Atomic orbital electron populations 1.21526 0.95478 0.98630 1.01957 1.18829 0.94816 0.96356 0.89373 0.93492 1.21245 1.31867 1.12456 0.91116 0.93752 1.25591 0.95104 0.95715 1.01395 1.69933 1.36933 1.23511 1.24412 0.85522 0.78352 0.78610 0.79282 1.20405 1.20093 1.19631 1.21683 0.74947 0.86794 0.85030 1.90489 1.51887 1.18660 1.85468 1.48337 1.69678 1.09679 1.08248 1.22642 1.01401 0.79879 1.01231 1.22996 0.95039 1.00158 0.83945 1.87911 1.85811 1.19073 1.36550 1.22111 0.97148 0.82409 0.94604 0.94077 1.21722 0.99511 1.05279 0.90303 1.20805 0.87314 0.77016 0.84833 1.43694 1.25365 1.61955 1.09286 1.90764 1.30446 1.43374 1.82197 1.22332 0.99146 0.98968 0.83594 0.90405 0.96423 0.93989 0.92440 0.89123 0.88591 0.85034 0.94012 0.84185 0.84856 0.74920 0.76368 0.88930 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.92 71.98 0.64 -5.08 16 2 C 0.03 1.40 1.81 -12.29 -0.02 1.38 16 3 H 0.05 2.40 6.36 -2.39 -0.02 2.38 16 4 C -0.53 -30.81 8.33 25.60 0.21 -30.60 16 5 H 0.04 2.76 7.03 -2.91 -0.02 2.74 16 6 C 0.02 1.19 5.29 84.66 0.45 1.64 16 7 N -0.91 -50.79 11.29 21.45 0.24 -50.55 16 8 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 9 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 C 0.52 24.96 6.81 87.66 0.60 25.55 16 13 O -0.59 -31.67 15.30 -3.05 -0.05 -31.72 16 14 N -0.62 -23.00 3.02 -817.34 -2.47 -25.47 16 15 C 0.07 2.15 6.45 86.36 0.56 2.71 16 16 C 0.06 1.52 6.98 72.08 0.50 2.02 16 17 O -0.37 -10.62 9.64 -135.49 -1.31 -11.93 16 18 C 0.10 2.55 2.32 30.70 0.07 2.62 16 19 H 0.04 1.32 7.95 -2.39 -0.02 1.30 16 20 C -0.13 -2.09 5.41 29.85 0.16 -1.93 16 21 C 0.51 10.41 7.98 87.66 0.70 11.10 16 22 N -0.84 -8.58 8.87 -173.54 -1.54 -10.12 16 23 O -0.59 -18.71 16.27 10.45 0.17 -18.54 16 24 C 0.08 2.40 5.91 86.35 0.51 2.91 16 25 H 0.08 4.09 5.95 -2.39 -0.01 4.07 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.04 1.74 7.79 -2.39 -0.02 1.72 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.10 3.17 5.21 -2.39 -0.01 3.15 16 31 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.42 1.10 8.83 -92.71 -0.82 0.28 16 36 H 0.41 3.77 8.93 -92.71 -0.83 2.94 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.09 2.72 7.12 -2.38 -0.02 2.70 16 Total: -1.00 -78.99 311.93 0.91 -78.08 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -0.55 Total: 11.12 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 4.38 Total: 12.34 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -3.77 Total: -86.14 kcal Atomic # 8 Polarization: -61.00 SS G_CDS: -1.18 Total: -62.18 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -78.99 0.91 -78.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331747914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.057 kcal (2) G-P(sol) polarization free energy of solvation -78.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds