Wall clock time and date at job start Mon Mar 30 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46989 * 2 1 4 4 O 1.42903 * 109.47686 * 239.99402 * 2 1 3 5 5 C 1.53008 * 109.47086 * 119.99295 * 2 1 3 6 6 H 1.09001 * 109.46630 * 60.00485 * 5 2 1 7 7 N 1.46499 * 109.47060 * 300.00642 * 5 2 1 8 8 C 1.34778 * 120.00288 * 84.99811 * 7 5 2 9 9 O 1.21279 * 119.99876 * 359.97438 * 8 7 5 10 10 C 1.50695 * 120.00068 * 180.02562 * 8 7 5 11 11 C 1.53005 * 117.49509 * 248.74571 * 10 8 7 12 12 C 1.52998 * 117.49958 * 180.09014 * 10 8 7 13 13 C 1.50696 * 109.47154 * 180.02562 * 5 2 1 14 14 O 1.21284 * 120.00096 * 120.00107 * 13 5 2 15 15 N 1.34774 * 119.99838 * 300.00044 * 13 5 2 16 16 C 1.46506 * 120.00072 * 180.02562 * 15 13 5 17 17 C 1.50703 * 109.47289 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99399 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00144 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99733 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46762 * 60.00562 * 21 19 17 23 23 H 1.48506 * 109.46725 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47116 * 300.00217 * 21 19 17 25 25 H 1.08987 * 109.47609 * 300.00277 * 1 2 3 26 26 H 1.09000 * 109.47058 * 60.01094 * 1 2 3 27 27 H 1.09001 * 109.46989 * 179.97438 * 1 2 3 28 28 H 0.96695 * 113.99582 * 299.99953 * 4 2 1 29 29 H 0.97001 * 120.00197 * 264.99911 * 7 5 2 30 30 H 1.09003 * 115.55249 * 34.41373 * 10 8 7 31 31 H 1.08995 * 117.50143 * 0.02562 * 11 10 8 32 32 H 1.09007 * 117.49593 * 145.02454 * 11 10 8 33 33 H 1.09007 * 117.49696 * 214.97691 * 12 10 8 34 34 H 1.09000 * 117.49889 * 359.96601 * 12 10 8 35 35 H 0.97001 * 120.00676 * 359.97438 * 15 13 5 36 36 H 1.09001 * 109.47060 * 300.00359 * 16 15 13 37 37 H 1.09004 * 109.47073 * 59.99848 * 16 15 13 38 38 H 0.96997 * 119.99752 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2494 6 1 1.6767 -1.7488 1.2494 7 7 1.5515 -0.0305 2.4455 8 6 0.3295 -0.3163 2.9369 9 8 -0.3659 -1.1449 2.3887 10 6 -0.1731 0.3946 4.1669 11 6 -0.3250 -0.4299 5.4468 12 6 -1.5674 0.0244 4.6767 13 6 3.5469 -0.7206 1.2497 14 8 4.1530 -0.1952 2.1595 15 7 4.2212 -1.3039 0.2390 16 6 5.6863 -1.3039 0.2396 17 6 6.1891 -2.0146 -0.9906 18 1 5.4876 -2.4247 -1.7018 19 6 7.5448 -2.1401 -1.2084 20 7 8.3990 -1.6401 -0.3424 21 14 8.1680 -3.0216 -2.7328 22 1 7.6730 -2.3226 -3.9459 23 1 9.6531 -3.0214 -2.7322 24 1 7.6736 -4.4218 -2.7319 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7211 -1.5953 -1.2327 29 1 2.1075 0.6326 2.8837 30 1 0.1417 1.4329 4.2715 31 1 -0.0610 -1.4863 5.3993 32 1 -0.1105 0.0662 6.3935 33 1 -2.1697 0.8191 5.1169 34 1 -2.1213 -0.7330 4.1220 35 1 3.7366 -1.7244 -0.4884 36 1 6.0496 -0.2762 0.2401 37 1 6.0493 -1.8180 1.1296 38 1 9.3527 -1.7287 -0.4955 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339411750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:44 Heat of formation + Delta-G solvation = -104.417576 kcal Electronic energy + Delta-G solvation = -21092.336684 eV Core-core repulsion = 17742.534635 eV Total energy + Delta-G solvation = -3349.802050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60785 -39.02909 -37.24877 -36.27344 -34.68286 -33.95285 -32.32207 -30.77589 -28.48738 -26.66712 -24.23700 -22.73952 -22.66473 -21.62709 -20.35018 -19.85888 -18.03905 -17.13436 -16.76009 -16.50682 -15.79633 -15.22650 -15.08104 -14.94751 -14.71257 -14.43308 -14.15918 -13.51858 -13.04575 -12.75693 -12.65258 -12.35148 -12.00165 -11.84649 -11.80284 -11.75025 -11.19568 -11.00447 -10.86718 -10.84450 -10.76687 -10.40384 -10.31959 -9.94457 -9.42258 -9.37311 -8.89822 -8.73256 -7.91850 -6.16107 -4.22668 2.35448 2.87017 3.15737 3.27003 3.31472 3.33299 3.64301 3.97873 4.29784 4.36986 4.51321 4.61328 4.64439 4.75559 4.92570 5.00438 5.13259 5.20259 5.36028 5.42789 5.50682 5.54385 5.70793 5.75535 5.87516 5.98231 6.15332 6.32046 7.26245 7.35312 7.45729 7.49019 7.56753 7.65916 7.96179 8.11619 8.57514 8.73627 9.01060 9.43367 10.94153 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032618 B = 0.004027 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.223539 B = 6950.832577 C = 7523.044898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 H 0.103 0.897 4 O -0.547 6.547 5 C 0.093 3.907 6 H 0.110 0.890 7 N -0.699 5.699 8 C 0.545 3.455 9 O -0.541 6.541 10 C -0.194 4.194 11 C -0.152 4.152 12 C -0.148 4.148 13 C 0.496 3.504 14 O -0.558 6.558 15 N -0.690 5.690 16 C 0.249 3.751 17 C -0.541 4.541 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.887 5.887 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.376 0.624 29 H 0.413 0.587 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.396 0.604 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.421 3.598 6.324 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.040 3.960 3 H 0.121 0.879 4 O -0.350 6.350 5 C -0.017 4.017 6 H 0.128 0.872 7 N -0.353 5.353 8 C 0.332 3.668 9 O -0.418 6.418 10 C -0.215 4.215 11 C -0.189 4.189 12 C -0.185 4.185 13 C 0.279 3.721 14 O -0.438 6.438 15 N -0.340 5.340 16 C 0.129 3.871 17 C -0.580 4.580 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.525 5.525 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.223 0.777 29 H 0.250 0.750 30 H 0.143 0.857 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.232 0.768 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.947 3.961 6.445 19.476 hybrid contribution 0.361 -0.764 -0.755 1.133 sum -17.585 3.197 5.690 18.758 Atomic orbital electron populations 1.22512 0.94951 1.03476 1.02091 1.22200 0.93871 0.96901 0.83073 0.87931 1.86716 1.76670 1.29186 1.42471 1.21713 0.93764 0.99372 0.86802 0.87249 1.45544 1.17481 1.43596 1.28670 1.19604 0.80899 0.82121 0.84187 1.90689 1.56519 1.34233 1.60397 1.22165 1.03583 1.01065 0.94683 1.22956 1.01666 1.00486 0.93803 1.22961 0.89650 1.03726 1.02173 1.20162 0.88192 0.80231 0.83496 1.90652 1.69603 1.46940 1.36580 1.46496 1.10373 1.54578 1.22528 1.19151 0.72649 0.97763 0.97566 1.21177 0.92175 1.37723 1.06889 0.91799 1.24946 0.96559 0.95481 0.97021 1.69965 1.02537 1.44475 1.35485 0.86458 0.77665 0.80004 0.82698 1.19994 1.21119 1.20062 0.91713 0.92238 0.91287 0.77651 0.74968 0.85736 0.88166 0.87720 0.87991 0.87391 0.76801 0.95437 0.95485 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 8.06 37.16 0.30 -1.73 16 2 C 0.10 1.32 3.34 -26.73 -0.09 1.23 16 3 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 4 O -0.55 -7.35 10.97 -35.23 -0.39 -7.74 16 5 C 0.09 1.36 2.50 -69.08 -0.17 1.18 16 6 H 0.11 1.56 7.58 -51.93 -0.39 1.17 16 7 N -0.70 -9.18 4.84 -54.93 -0.27 -9.45 16 8 C 0.55 6.80 5.97 -10.99 -0.07 6.74 16 9 O -0.54 -7.95 13.38 5.56 0.07 -7.87 16 10 C -0.19 -1.81 6.19 -91.77 -0.57 -2.38 16 11 C -0.15 -1.26 10.24 -26.69 -0.27 -1.53 16 12 C -0.15 -1.21 10.05 -26.70 -0.27 -1.48 16 13 C 0.50 9.64 7.22 -10.99 -0.08 9.56 16 14 O -0.56 -12.67 15.84 5.55 0.09 -12.58 16 15 N -0.69 -14.44 5.19 -61.47 -0.32 -14.76 16 16 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 17 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 18 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.06 0.78 5.77 -51.94 -0.30 0.48 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 28 H 0.38 3.66 8.84 45.56 0.40 4.06 16 29 H 0.41 5.31 7.79 -40.82 -0.32 4.99 16 30 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.11 1.02 7.67 -51.93 -0.40 0.62 16 35 H 0.40 7.27 6.16 -40.82 -0.25 7.02 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -33.10 320.47 -6.49 -39.59 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -4.56 Total: 12.65 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.66 Total: 4.79 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.15 Total: -49.58 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.22 Total: -28.19 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.10 -6.49 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339411750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.832 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds