Wall clock time and date at job start Mon Mar 30 2020 02:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46989 * 2 1 4 4 O 1.42903 * 109.47686 * 239.99402 * 2 1 3 5 5 C 1.53008 * 109.47086 * 119.99295 * 2 1 3 6 6 H 1.09001 * 109.46630 * 60.00485 * 5 2 1 7 7 N 1.46499 * 109.47060 * 300.00642 * 5 2 1 8 8 C 1.34778 * 120.00288 * 84.99811 * 7 5 2 9 9 O 1.21279 * 119.99876 * 359.97438 * 8 7 5 10 10 C 1.50695 * 120.00068 * 180.02562 * 8 7 5 11 11 C 1.53005 * 117.49509 * 248.74571 * 10 8 7 12 12 C 1.52998 * 117.49958 * 180.09014 * 10 8 7 13 13 C 1.50696 * 109.47154 * 180.02562 * 5 2 1 14 14 O 1.21284 * 120.00096 * 120.00107 * 13 5 2 15 15 N 1.34774 * 119.99838 * 300.00044 * 13 5 2 16 16 C 1.46506 * 120.00072 * 180.02562 * 15 13 5 17 17 C 1.50703 * 109.47289 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99399 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00144 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99733 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46762 * 60.00562 * 21 19 17 23 23 H 1.48506 * 109.46725 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47116 * 300.00217 * 21 19 17 25 25 H 1.08987 * 109.47609 * 300.00277 * 1 2 3 26 26 H 1.09000 * 109.47058 * 60.01094 * 1 2 3 27 27 H 1.09001 * 109.46989 * 179.97438 * 1 2 3 28 28 H 0.96695 * 113.99582 * 299.99953 * 4 2 1 29 29 H 0.97001 * 120.00197 * 264.99911 * 7 5 2 30 30 H 1.09003 * 115.55249 * 34.41373 * 10 8 7 31 31 H 1.08995 * 117.50143 * 0.02562 * 11 10 8 32 32 H 1.09007 * 117.49593 * 145.02454 * 11 10 8 33 33 H 1.09007 * 117.49696 * 214.97691 * 12 10 8 34 34 H 1.09000 * 117.49889 * 359.96601 * 12 10 8 35 35 H 0.97001 * 120.00676 * 359.97438 * 15 13 5 36 36 H 1.09001 * 109.47060 * 300.00359 * 16 15 13 37 37 H 1.09004 * 109.47073 * 59.99848 * 16 15 13 38 38 H 0.96997 * 119.99752 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2494 6 1 1.6767 -1.7488 1.2494 7 7 1.5515 -0.0305 2.4455 8 6 0.3295 -0.3163 2.9369 9 8 -0.3659 -1.1449 2.3887 10 6 -0.1731 0.3946 4.1669 11 6 -0.3250 -0.4299 5.4468 12 6 -1.5674 0.0244 4.6767 13 6 3.5469 -0.7206 1.2497 14 8 4.1530 -0.1952 2.1595 15 7 4.2212 -1.3039 0.2390 16 6 5.6863 -1.3039 0.2396 17 6 6.1891 -2.0146 -0.9906 18 1 5.4876 -2.4247 -1.7018 19 6 7.5448 -2.1401 -1.2084 20 7 8.3990 -1.6401 -0.3424 21 14 8.1680 -3.0216 -2.7328 22 1 7.6730 -2.3226 -3.9459 23 1 9.6531 -3.0214 -2.7322 24 1 7.6736 -4.4218 -2.7319 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7211 -1.5953 -1.2327 29 1 2.1075 0.6326 2.8837 30 1 0.1417 1.4329 4.2715 31 1 -0.0610 -1.4863 5.3993 32 1 -0.1105 0.0662 6.3935 33 1 -2.1697 0.8191 5.1169 34 1 -2.1213 -0.7330 4.1220 35 1 3.7366 -1.7244 -0.4884 36 1 6.0496 -0.2762 0.2401 37 1 6.0493 -1.8180 1.1296 38 1 9.3527 -1.7287 -0.4955 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339411750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:43 Heat of formation + Delta-G solvation = -131.477525 kcal Electronic energy + Delta-G solvation = -21093.510092 eV Core-core repulsion = 17742.534635 eV Total energy + Delta-G solvation = -3350.975457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78808 -40.36349 -38.47202 -37.09841 -36.29343 -35.39676 -34.32921 -31.84239 -30.07700 -28.30291 -25.33313 -24.47000 -23.29648 -22.88550 -21.61955 -21.22084 -19.36533 -18.43693 -17.93815 -17.89035 -17.27710 -16.82405 -16.48922 -16.01552 -15.96194 -15.89873 -15.35531 -14.89961 -14.47318 -14.21034 -14.00834 -13.60083 -13.55428 -13.36231 -12.95651 -12.84353 -12.68383 -12.42011 -12.28180 -12.22603 -11.63881 -11.51160 -11.49517 -11.38557 -10.94068 -10.91019 -10.78927 -10.12811 -9.84957 -8.28778 -6.44748 1.39536 1.43722 1.47722 1.55281 1.56383 1.78908 2.34718 2.55694 2.93266 3.06207 3.27807 3.55756 3.70035 3.81098 3.88049 3.89259 4.01240 4.19820 4.24687 4.39829 4.76372 4.81926 4.91826 4.96669 5.01919 5.06772 5.16443 5.22869 5.25250 5.29874 5.45906 5.66252 5.84127 6.41240 6.64536 6.69204 6.79642 7.11485 7.21905 7.37950 8.83133 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032618 B = 0.004027 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.223539 B = 6950.832577 C = 7523.044898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.109 3.891 3 H 0.095 0.905 4 O -0.560 6.560 5 C 0.109 3.891 6 H 0.118 0.882 7 N -0.700 5.700 8 C 0.544 3.456 9 O -0.564 6.564 10 C -0.204 4.204 11 C -0.149 4.149 12 C -0.139 4.139 13 C 0.495 3.505 14 O -0.592 6.592 15 N -0.687 5.687 16 C 0.266 3.734 17 C -0.555 4.555 18 H 0.082 0.918 19 C 0.005 3.995 20 N -0.930 5.930 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.262 1.262 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.392 0.608 29 H 0.415 0.585 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.410 0.590 36 H -0.010 1.010 37 H -0.009 1.009 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.094 3.370 5.564 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.113 0.887 4 O -0.367 6.367 5 C 0.000 4.000 6 H 0.135 0.865 7 N -0.354 5.354 8 C 0.332 3.668 9 O -0.443 6.443 10 C -0.225 4.225 11 C -0.187 4.187 12 C -0.176 4.176 13 C 0.280 3.720 14 O -0.475 6.475 15 N -0.338 5.338 16 C 0.143 3.857 17 C -0.593 4.593 18 H 0.100 0.900 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.186 1.186 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.243 0.757 29 H 0.252 0.748 30 H 0.165 0.835 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.111 0.889 35 H 0.249 0.751 36 H 0.008 0.992 37 H 0.009 0.991 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.679 3.720 5.682 20.817 hybrid contribution 0.853 -0.682 -0.446 1.180 sum -18.826 3.038 5.236 19.775 Atomic orbital electron populations 1.22369 0.93293 1.03488 1.02478 1.22117 0.94826 0.96218 0.82068 0.88690 1.86677 1.77048 1.30641 1.42332 1.21550 0.89457 1.00459 0.88558 0.86468 1.45608 1.17938 1.43547 1.28348 1.20164 0.80137 0.81743 0.84713 1.90674 1.56988 1.35365 1.61303 1.22259 1.04716 1.01979 0.93534 1.23055 1.01596 0.99765 0.94267 1.23038 0.89262 1.03905 1.01430 1.20990 0.90342 0.78545 0.82094 1.90630 1.71079 1.48032 1.37721 1.46234 1.08307 1.55434 1.23821 1.18593 0.75820 0.94966 0.96292 1.21565 0.92940 1.37649 1.07164 0.89956 1.26029 0.96797 0.96094 1.00515 1.70122 1.02982 1.45938 1.37849 0.85229 0.76816 0.79085 0.78235 1.18798 1.21058 1.18629 0.92025 0.91052 0.91423 0.75735 0.74773 0.83500 0.89649 0.85401 0.85344 0.88948 0.75119 0.99241 0.99127 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.06 71.98 0.58 -2.85 16 2 C 0.11 2.73 3.34 30.60 0.10 2.83 16 3 H 0.10 2.55 8.14 -2.39 -0.02 2.54 16 4 O -0.56 -14.23 10.97 -148.98 -1.63 -15.87 16 5 C 0.11 3.13 2.50 44.25 0.11 3.24 16 6 H 0.12 3.23 7.58 -2.39 -0.02 3.21 16 7 N -0.70 -17.94 4.84 -446.10 -2.16 -20.10 16 8 C 0.54 12.96 5.97 87.66 0.52 13.48 16 9 O -0.56 -15.98 13.38 -3.03 -0.04 -16.02 16 10 C -0.20 -3.42 6.19 -11.54 -0.07 -3.49 16 11 C -0.15 -2.20 10.24 30.62 0.31 -1.88 16 12 C -0.14 -1.96 10.05 30.62 0.31 -1.66 16 13 C 0.49 19.54 7.22 87.66 0.63 20.17 16 14 O -0.59 -27.78 15.84 -3.04 -0.05 -27.83 16 15 N -0.69 -29.20 5.19 -466.77 -2.42 -31.62 16 16 C 0.27 14.61 5.43 85.63 0.46 15.08 16 17 C -0.56 -30.39 9.28 25.60 0.24 -30.16 16 18 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 19 C 0.01 0.30 5.46 84.65 0.46 0.76 16 20 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 21 Si 0.98 42.52 29.54 68.60 2.03 44.55 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H 0.06 1.38 5.77 -2.39 -0.01 1.37 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.50 7.53 -2.39 -0.02 1.48 16 28 H 0.39 6.87 8.84 -74.06 -0.66 6.22 16 29 H 0.41 10.51 7.79 -92.71 -0.72 9.79 16 30 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.13 1.28 8.14 -2.38 -0.02 1.27 16 33 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.09 1.63 7.67 -2.39 -0.02 1.61 16 35 H 0.41 14.87 6.16 -92.71 -0.57 14.30 16 36 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -72.85 320.47 -1.18 -74.03 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.84 Total: 33.10 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 3.66 Total: 15.51 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -4.30 Total: -107.47 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: -1.72 Total: -59.72 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -72.85 -1.18 -74.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339411750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.448 kcal (2) G-P(sol) polarization free energy of solvation -72.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds