Wall clock time and date at job start Mon Mar 30 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47080 * 2 1 4 4 O 1.42902 * 109.47163 * 239.99684 * 2 1 3 5 5 C 1.52995 * 109.47239 * 119.99876 * 2 1 3 6 6 H 1.09003 * 109.47408 * 300.00173 * 5 2 1 7 7 N 1.46509 * 109.47156 * 59.99685 * 5 2 1 8 8 C 1.34770 * 120.00092 * 274.99977 * 7 5 2 9 9 O 1.21281 * 120.00094 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00034 * 180.02562 * 8 7 5 11 11 C 1.53007 * 117.49541 * 248.75040 * 10 8 7 12 12 C 1.52997 * 117.49955 * 180.09093 * 10 8 7 13 13 C 1.50698 * 109.47490 * 179.97438 * 5 2 1 14 14 O 1.21283 * 120.00472 * 240.00297 * 13 5 2 15 15 N 1.34777 * 119.99538 * 59.99635 * 13 5 2 16 16 C 1.46499 * 119.99665 * 179.72653 * 15 13 5 17 17 C 1.50703 * 109.47138 * 180.28062 * 16 15 13 18 18 H 1.08001 * 120.00037 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00502 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99575 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47245 * 60.00392 * 21 19 17 23 23 H 1.48504 * 109.46709 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47176 * 299.99915 * 21 19 17 25 25 H 1.09001 * 109.47042 * 60.00212 * 1 2 3 26 26 H 1.08994 * 109.47484 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47241 * 300.00155 * 1 2 3 28 28 H 0.96709 * 113.99466 * 59.99584 * 4 2 1 29 29 H 0.96996 * 119.99554 * 95.00338 * 7 5 2 30 30 H 1.08991 * 115.55272 * 34.41659 * 10 8 7 31 31 H 1.08992 * 117.50410 * 359.97438 * 11 10 8 32 32 H 1.09002 * 117.49170 * 145.02413 * 11 10 8 33 33 H 1.09003 * 117.50112 * 214.97526 * 12 10 8 34 34 H 1.08999 * 117.49874 * 359.97438 * 12 10 8 35 35 H 0.97001 * 120.00485 * 0.02562 * 15 13 5 36 36 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 37 37 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 38 38 H 0.96997 * 120.00009 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2492 6 1 1.6767 -0.2074 2.1392 7 7 1.5516 -2.1025 1.2493 8 6 0.3297 -2.3852 1.7426 9 8 -0.3658 -1.4960 2.1861 10 6 -0.1724 -3.8060 1.7432 11 6 -1.3322 -4.1458 0.8048 12 6 -1.5684 -4.0617 2.3149 13 6 3.5470 -0.7218 1.2489 14 8 4.1531 -1.7723 1.2490 15 7 4.2212 0.4452 1.2486 16 6 5.6862 0.4447 1.2544 17 6 6.1890 1.8654 1.2596 18 1 5.4875 2.6865 1.2583 19 6 7.5447 2.1168 1.2650 20 7 8.3990 1.1169 1.2651 21 14 8.1679 3.8778 1.2707 22 1 7.6688 4.5756 2.4829 23 1 9.6530 3.8772 1.2755 24 1 7.6776 4.5804 0.0579 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.7209 -0.2702 -1.9980 29 1 2.1077 -2.8135 0.8943 30 1 0.5855 -4.5724 1.9045 31 1 -1.7322 -3.3416 0.1873 32 1 -1.3372 -5.1360 0.3491 33 1 -1.7289 -4.9966 2.8519 34 1 -2.1234 -3.2023 2.6909 35 1 3.7366 1.2855 1.2488 36 1 6.0459 -0.0713 2.1447 37 1 6.0529 -0.0672 0.3647 38 1 9.3527 1.2939 1.2693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339411751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:47 Heat of formation + Delta-G solvation = -103.861184 kcal Electronic energy + Delta-G solvation = -21095.097242 eV Core-core repulsion = 17745.319320 eV Total energy + Delta-G solvation = -3349.777923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49566 -38.91534 -37.18457 -36.14995 -34.49384 -33.99254 -32.42587 -30.94242 -28.42648 -26.66908 -24.24849 -22.71980 -22.60394 -21.51570 -20.11448 -19.69158 -17.97511 -17.58694 -16.84832 -16.10863 -15.83463 -15.14549 -15.07079 -14.98761 -14.55596 -14.29442 -14.02951 -13.69702 -13.19073 -12.73300 -12.47301 -12.25597 -12.07423 -11.96001 -11.76657 -11.66179 -11.22283 -11.03086 -10.88583 -10.80876 -10.68322 -10.35796 -10.09092 -9.85980 -9.44587 -9.30319 -8.87480 -8.76556 -7.95524 -6.18718 -4.26048 2.45431 3.00835 3.22440 3.24210 3.29069 3.30464 3.68763 3.99350 4.19947 4.33517 4.55092 4.63143 4.70325 4.90601 4.99904 5.04910 5.17438 5.20434 5.37747 5.45159 5.48999 5.60309 5.73983 5.74628 5.87408 5.92076 6.22761 6.41750 7.25122 7.33361 7.48370 7.59168 7.60846 7.66073 7.93572 8.23232 8.53357 8.71709 8.98004 9.40222 10.91415 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.036160 B = 0.003872 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.155593 B = 7229.299470 C = 7506.269519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.069 0.931 4 O -0.555 6.555 5 C 0.132 3.868 6 H 0.121 0.879 7 N -0.692 5.692 8 C 0.545 3.455 9 O -0.547 6.547 10 C -0.192 4.192 11 C -0.153 4.153 12 C -0.148 4.148 13 C 0.506 3.494 14 O -0.548 6.548 15 N -0.704 5.704 16 C 0.251 3.749 17 C -0.545 4.545 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.377 0.623 29 H 0.414 0.586 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.390 0.610 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.646 -5.946 -2.426 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.035 3.965 3 H 0.087 0.913 4 O -0.360 6.360 5 C 0.023 3.977 6 H 0.138 0.862 7 N -0.344 5.344 8 C 0.332 3.668 9 O -0.425 6.425 10 C -0.213 4.213 11 C -0.190 4.190 12 C -0.185 4.185 13 C 0.289 3.711 14 O -0.427 6.427 15 N -0.352 5.352 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.223 0.777 29 H 0.251 0.749 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.223 0.777 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.149 -6.485 -1.658 19.344 hybrid contribution 0.364 1.390 -0.580 1.549 sum -17.785 -5.096 -2.237 18.635 Atomic orbital electron populations 1.22541 0.95236 1.03136 1.02321 1.22145 0.93674 0.95084 0.85611 0.91331 1.86604 1.76881 1.57071 1.15473 1.20980 0.93360 0.84655 0.98692 0.86164 1.45492 1.17452 1.09214 1.62238 1.19562 0.81016 0.89502 0.76756 1.90676 1.56626 1.47958 1.47238 1.22170 0.93978 0.95766 1.09392 1.22931 0.99340 1.03258 0.93481 1.22954 0.95864 1.03790 0.95921 1.20095 0.88228 0.85195 0.77600 1.90643 1.69584 1.31382 1.51076 1.46374 1.10487 1.06499 1.71875 1.19138 0.72390 0.97516 0.97871 1.21174 0.92205 0.91428 1.53516 0.91916 1.24945 0.96553 0.97810 0.94632 1.69961 1.02584 1.31006 1.48683 0.86466 0.77758 0.83920 0.78711 1.20030 1.21055 1.20052 0.92919 0.91849 0.90640 0.77657 0.74893 0.85727 0.88354 0.87842 0.88022 0.87409 0.77698 0.95446 0.95304 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 8.06 37.16 0.30 -1.75 16 2 C 0.10 1.26 3.30 -26.73 -0.09 1.17 16 3 H 0.07 0.84 7.57 -51.93 -0.39 0.44 16 4 O -0.56 -7.67 12.80 -35.23 -0.45 -8.12 16 5 C 0.13 2.06 2.51 -69.08 -0.17 1.88 16 6 H 0.12 1.80 7.58 -51.93 -0.39 1.40 16 7 N -0.69 -10.07 4.71 -54.93 -0.26 -10.33 16 8 C 0.54 7.40 5.97 -10.99 -0.07 7.33 16 9 O -0.55 -8.50 13.38 5.56 0.07 -8.43 16 10 C -0.19 -1.99 6.19 -91.77 -0.57 -2.56 16 11 C -0.15 -1.29 10.24 -26.69 -0.27 -1.56 16 12 C -0.15 -1.31 10.05 -26.69 -0.27 -1.58 16 13 C 0.51 10.11 6.87 -10.99 -0.08 10.03 16 14 O -0.55 -12.92 15.84 5.55 0.09 -12.83 16 15 N -0.70 -14.69 5.44 -61.47 -0.33 -15.03 16 16 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 17 C -0.54 -14.65 9.28 -34.44 -0.32 -14.96 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 21 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.82 5.77 -51.93 -0.30 0.52 16 27 H 0.07 0.93 7.53 -51.92 -0.39 0.54 16 28 H 0.38 3.54 9.08 45.56 0.41 3.95 16 29 H 0.41 6.16 7.79 -40.82 -0.32 5.84 16 30 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 1.09 7.67 -51.93 -0.40 0.69 16 35 H 0.39 6.97 7.74 -40.82 -0.32 6.65 16 36 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -33.41 323.27 -6.54 -39.95 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -4.59 Total: 13.18 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.66 Total: 6.26 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.14 Total: -50.55 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.29 Total: -29.38 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.41 -6.54 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339411751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.915 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds