Wall clock time and date at job start Mon Mar 30 2020 02:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.58070 * 2 1 4 4 C 1.53189 * 109.58962 * 120.28214 * 2 1 3 5 5 C 1.53040 * 109.31278 * 65.15443 * 4 2 1 6 6 C 1.53036 * 109.53836 * 61.36426 * 5 4 2 7 7 H 1.09003 * 109.49852 * 58.58979 * 6 5 4 8 8 C 1.50705 * 109.49979 * 178.68202 * 6 5 4 9 9 O 1.20827 * 119.99647 * 0.02562 * 8 6 5 10 10 O 1.34224 * 120.00019 * 180.02562 * 8 6 5 11 11 C 1.53192 * 109.31445 * 298.63747 * 6 5 4 12 12 N 1.46922 * 109.58929 * 239.57598 * 2 1 3 13 13 C 1.34773 * 120.63802 * 113.79580 * 12 2 1 14 14 O 1.21593 * 119.99276 * 354.96377 * 13 12 2 15 15 N 1.34773 * 120.00757 * 174.96833 * 13 12 2 16 16 C 1.46501 * 120.00474 * 185.07523 * 15 13 12 17 17 C 1.50695 * 109.47359 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99894 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99606 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00404 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47128 * 89.99503 * 21 19 17 23 23 H 1.48494 * 109.47464 * 209.99773 * 21 19 17 24 24 H 1.48504 * 109.46740 * 330.00287 * 21 19 17 25 25 H 1.08993 * 109.47517 * 299.71226 * 1 2 3 26 26 H 1.08996 * 109.47055 * 59.72035 * 1 2 3 27 27 H 1.09007 * 109.46395 * 179.71697 * 1 2 3 28 28 H 1.09005 * 109.49846 * 305.20489 * 4 2 1 29 29 H 1.08997 * 109.49882 * 185.10673 * 4 2 1 30 30 H 1.09002 * 109.45873 * 301.34789 * 5 4 2 31 31 H 1.08995 * 109.46156 * 181.38575 * 5 4 2 32 32 H 0.96701 * 116.99980 * 180.02562 * 10 8 6 33 33 H 1.09005 * 109.58463 * 174.42160 * 11 6 5 34 34 H 1.08999 * 109.58226 * 294.84360 * 11 6 5 35 35 H 0.97001 * 119.99785 * 5.06661 * 15 13 12 36 36 H 1.08998 * 109.46823 * 300.00087 * 16 15 13 37 37 H 1.09004 * 109.46977 * 59.99105 * 16 15 13 38 38 H 0.97004 * 119.99861 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 1.6416 -2.2026 1.1729 6 6 2.2801 -2.8464 -0.0599 7 1 3.3641 -2.7473 -0.0018 8 6 1.9101 -4.3063 -0.1136 9 8 1.2072 -4.7833 0.7456 10 8 2.3613 -5.0766 -1.1160 11 6 1.7692 -2.1426 -1.3210 12 7 2.0226 -0.7009 -1.1936 13 6 2.6936 -0.0343 -2.1536 14 8 2.8172 1.1732 -2.0820 15 7 3.2277 -0.7058 -3.1929 16 6 4.0508 0.0015 -4.1770 17 6 4.5227 -0.9697 -5.2282 18 1 4.2382 -2.0099 -5.1689 19 6 5.3175 -0.5303 -6.2655 20 7 5.7297 -1.3780 -7.1827 21 14 5.8101 1.2686 -6.3676 22 1 7.0839 1.4755 -5.6328 23 1 5.9916 1.6522 -7.7906 24 1 4.7464 2.1083 -5.7603 25 1 -0.3634 0.5093 0.8925 26 1 -0.3633 0.5181 -0.8874 27 1 -0.3632 -1.0278 -0.0051 28 1 1.6075 -0.2757 2.1372 29 1 3.1297 -0.6486 1.2921 30 1 0.5566 -2.2801 1.1021 31 1 1.9845 -2.7175 2.0702 32 1 2.0970 -6.0067 -1.1080 33 1 2.2946 -2.5302 -2.1940 34 1 0.6988 -2.3175 -1.4287 35 1 3.0671 -1.6576 -3.2893 36 1 3.4599 0.7876 -4.6471 37 1 4.9132 0.4441 -3.6784 38 1 6.2892 -1.0690 -7.9123 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341362663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:21 Heat of formation + Delta-G solvation = -123.149075 kcal Electronic energy + Delta-G solvation = -21486.438487 eV Core-core repulsion = 18135.824179 eV Total energy + Delta-G solvation = -3350.614308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95595 -39.81168 -37.57000 -36.29149 -34.47305 -32.98842 -32.77664 -31.91860 -28.38488 -27.53536 -24.93603 -24.22741 -22.54876 -21.25450 -20.30428 -18.94084 -18.30825 -18.10977 -16.71537 -16.47089 -16.15087 -15.69486 -15.01793 -14.85764 -14.50775 -14.01799 -13.91226 -13.71089 -13.22691 -13.11523 -12.87095 -12.40408 -12.26389 -12.17908 -12.09776 -11.73991 -11.51558 -11.16556 -10.99149 -10.95159 -10.75918 -10.74182 -10.49380 -9.95587 -9.54168 -9.44996 -8.77615 -8.60661 -8.00321 -6.19921 -4.21799 1.95289 2.72934 3.06622 3.28374 3.35526 3.44219 3.69171 4.30767 4.34889 4.44555 4.54131 4.72646 4.82598 4.96960 5.15713 5.17576 5.24131 5.35640 5.38526 5.47059 5.56464 5.68750 5.74969 5.81759 5.93586 6.03408 6.25316 6.32067 6.60481 6.80895 7.11960 7.22936 7.36913 7.48675 7.68710 8.25491 8.64422 8.79729 9.15174 9.41140 10.92025 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.005272 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.006041 B = 5309.882060 C = 6387.370809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.104 0.896 4 C -0.128 4.128 5 C -0.103 4.103 6 C -0.097 4.097 7 H 0.116 0.884 8 C 0.488 3.512 9 O -0.516 6.516 10 O -0.509 6.509 11 C 0.124 3.876 12 N -0.630 5.630 13 C 0.701 3.299 14 O -0.597 6.597 15 N -0.722 5.722 16 C 0.237 3.763 17 C -0.542 4.542 18 H 0.079 0.921 19 C 0.078 3.922 20 N -0.893 5.893 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.411 0.589 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.392 0.608 36 H 0.024 0.976 37 H 0.018 0.982 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -4.206 16.088 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.122 0.878 4 C -0.167 4.167 5 C -0.141 4.141 6 C -0.117 4.117 7 H 0.134 0.866 8 C 0.329 3.671 9 O -0.404 6.404 10 O -0.321 6.321 11 C -0.001 4.001 12 N -0.369 5.369 13 C 0.402 3.598 14 O -0.476 6.476 15 N -0.377 5.377 16 C 0.114 3.886 17 C -0.580 4.580 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.530 5.530 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.184 1.184 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.270 0.730 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.228 0.772 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.896 -3.027 16.133 18.670 hybrid contribution 0.140 -0.446 -0.251 0.530 sum -8.756 -3.472 15.882 18.465 Atomic orbital electron populations 1.22168 0.95439 1.02089 1.02389 1.20997 0.93656 0.97635 0.82978 0.87814 1.21969 1.01995 0.94657 0.98041 1.21457 1.01464 0.95350 0.95794 1.21500 1.04287 0.86814 0.99123 0.86560 1.23346 0.76043 0.89643 0.78024 1.90712 1.35636 1.75184 1.38907 1.84597 1.71272 1.27112 1.49101 1.21418 1.01111 0.81339 0.96214 1.47313 1.60405 1.07342 1.21793 1.15997 0.78439 0.85278 0.80059 1.90859 1.65728 1.12136 1.78914 1.45606 1.53767 1.12326 1.25962 1.19380 0.89434 0.93332 0.86406 1.21082 1.32589 0.96473 1.07841 0.90298 1.24771 0.94963 0.97915 0.94912 1.69883 1.35130 1.34816 1.13205 0.86821 0.79949 0.85385 0.77568 1.19879 1.20952 1.18411 0.91613 0.92092 0.92417 0.90074 0.91069 0.90480 0.90773 0.73019 0.88588 0.91020 0.77210 0.95786 0.96418 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.02 37.16 0.34 -1.32 16 2 C 0.15 1.83 3.19 -67.60 -0.22 1.62 16 3 H 0.10 1.47 7.04 -51.93 -0.37 1.10 16 4 C -0.13 -1.21 5.55 -26.61 -0.15 -1.36 16 5 C -0.10 -0.96 4.25 -26.69 -0.11 -1.08 16 6 C -0.10 -1.00 2.78 -91.65 -0.25 -1.25 16 7 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 8 C 0.49 5.16 7.63 36.01 0.27 5.44 16 9 O -0.52 -6.62 16.74 -18.75 -0.31 -6.93 16 10 O -0.51 -4.63 13.35 -39.24 -0.52 -5.16 16 11 C 0.12 1.45 5.23 -3.71 -0.02 1.43 16 12 N -0.63 -9.09 2.68 -170.91 -0.46 -9.55 16 13 C 0.70 13.70 8.30 -86.92 -0.72 12.98 16 14 O -0.60 -13.87 15.79 5.28 0.08 -13.78 16 15 N -0.72 -14.84 5.46 -66.42 -0.36 -15.21 16 16 C 0.24 5.86 4.50 -5.20 -0.02 5.83 16 17 C -0.54 -14.80 9.83 -34.44 -0.34 -15.14 16 18 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 21 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.55 5.72 -51.93 -0.30 0.25 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.73 6.49 -51.93 -0.34 0.39 16 31 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.41 1.99 9.10 45.56 0.41 2.40 16 33 H 0.10 1.18 5.57 -51.93 -0.29 0.89 16 34 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 35 H 0.39 7.17 5.78 -40.82 -0.24 6.93 16 36 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 37 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 308.83 15.07 4.65 4.65 Total: -1.00 -34.15 308.83 -6.51 -40.67 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.38 Total: 4.95 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.32 Total: 9.25 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.05 Total: -50.38 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.75 Total: -25.87 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.15 -6.51 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341362663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.484 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds