Wall clock time and date at job start Mon Mar 30 2020 02:09:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09004 * 109.58070 * 2 1
4 4 C 1.53189 * 109.58962 * 120.28214 * 2 1 3
5 5 C 1.53040 * 109.31278 * 65.15443 * 4 2 1
6 6 C 1.53036 * 109.53836 * 61.36426 * 5 4 2
7 7 H 1.09003 * 109.49852 * 58.58979 * 6 5 4
8 8 C 1.50705 * 109.49979 * 178.68202 * 6 5 4
9 9 O 1.20827 * 119.99647 * 0.02562 * 8 6 5
10 10 O 1.34224 * 120.00019 * 180.02562 * 8 6 5
11 11 C 1.53192 * 109.31445 * 298.63747 * 6 5 4
12 12 N 1.46922 * 109.58929 * 239.57598 * 2 1 3
13 13 C 1.34773 * 120.63802 * 113.79580 * 12 2 1
14 14 O 1.21593 * 119.99276 * 354.96377 * 13 12 2
15 15 N 1.34773 * 120.00757 * 174.96833 * 13 12 2
16 16 C 1.46501 * 120.00474 * 185.07523 * 15 13 12
17 17 C 1.50695 * 109.47359 * 179.97438 * 16 15 13
18 18 H 1.08004 * 119.99715 * 359.97438 * 17 16 15
19 19 C 1.37873 * 119.99894 * 179.97438 * 17 16 15
20 20 N 1.31517 * 119.99606 * 179.97438 * 19 17 16
21 21 Si 1.86796 * 120.00404 * 0.02562 * 19 17 16
22 22 H 1.48506 * 109.47128 * 89.99503 * 21 19 17
23 23 H 1.48494 * 109.47464 * 209.99773 * 21 19 17
24 24 H 1.48504 * 109.46740 * 330.00287 * 21 19 17
25 25 H 1.08993 * 109.47517 * 299.71226 * 1 2 3
26 26 H 1.08996 * 109.47055 * 59.72035 * 1 2 3
27 27 H 1.09007 * 109.46395 * 179.71697 * 1 2 3
28 28 H 1.09005 * 109.49846 * 305.20489 * 4 2 1
29 29 H 1.08997 * 109.49882 * 185.10673 * 4 2 1
30 30 H 1.09002 * 109.45873 * 301.34789 * 5 4 2
31 31 H 1.08995 * 109.46156 * 181.38575 * 5 4 2
32 32 H 0.96701 * 116.99980 * 180.02562 * 10 8 6
33 33 H 1.09005 * 109.58463 * 174.42160 * 11 6 5
34 34 H 1.08999 * 109.58226 * 294.84360 * 11 6 5
35 35 H 0.97001 * 119.99785 * 5.06661 * 15 13 12
36 36 H 1.08998 * 109.46823 * 300.00087 * 16 15 13
37 37 H 1.09004 * 109.46977 * 59.99105 * 16 15 13
38 38 H 0.97004 * 119.99861 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8953 1.0270 0.0000
4 6 2.0436 -0.7278 1.2463
5 6 1.6416 -2.2026 1.1729
6 6 2.2801 -2.8464 -0.0599
7 1 3.3641 -2.7473 -0.0018
8 6 1.9101 -4.3063 -0.1136
9 8 1.2072 -4.7833 0.7456
10 8 2.3613 -5.0766 -1.1160
11 6 1.7692 -2.1426 -1.3210
12 7 2.0226 -0.7009 -1.1936
13 6 2.6936 -0.0343 -2.1536
14 8 2.8172 1.1732 -2.0820
15 7 3.2277 -0.7058 -3.1929
16 6 4.0508 0.0015 -4.1770
17 6 4.5227 -0.9697 -5.2282
18 1 4.2382 -2.0099 -5.1689
19 6 5.3175 -0.5303 -6.2655
20 7 5.7297 -1.3780 -7.1827
21 14 5.8101 1.2686 -6.3676
22 1 7.0839 1.4755 -5.6328
23 1 5.9916 1.6522 -7.7906
24 1 4.7464 2.1083 -5.7603
25 1 -0.3634 0.5093 0.8925
26 1 -0.3633 0.5181 -0.8874
27 1 -0.3632 -1.0278 -0.0051
28 1 1.6075 -0.2757 2.1372
29 1 3.1297 -0.6486 1.2921
30 1 0.5566 -2.2801 1.1021
31 1 1.9845 -2.7175 2.0702
32 1 2.0970 -6.0067 -1.1080
33 1 2.2946 -2.5302 -2.1940
34 1 0.6988 -2.3175 -1.4287
35 1 3.0671 -1.6576 -3.2893
36 1 3.4599 0.7876 -4.6471
37 1 4.9132 0.4441 -3.6784
38 1 6.2892 -1.0690 -7.9123
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001341362663.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:09:21
Heat of formation + Delta-G solvation = -123.149075 kcal
Electronic energy + Delta-G solvation = -21486.438487 eV
Core-core repulsion = 18135.824179 eV
Total energy + Delta-G solvation = -3350.614308 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.95595 -39.81168 -37.57000 -36.29149 -34.47305 -32.98842 -32.77664 -31.91860
-28.38488 -27.53536 -24.93603 -24.22741 -22.54876 -21.25450 -20.30428 -18.94084
-18.30825 -18.10977 -16.71537 -16.47089 -16.15087 -15.69486 -15.01793 -14.85764
-14.50775 -14.01799 -13.91226 -13.71089 -13.22691 -13.11523 -12.87095 -12.40408
-12.26389 -12.17908 -12.09776 -11.73991 -11.51558 -11.16556 -10.99149 -10.95159
-10.75918 -10.74182 -10.49380 -9.95587 -9.54168 -9.44996 -8.77615 -8.60661
-8.00321 -6.19921 -4.21799 1.95289 2.72934 3.06622 3.28374 3.35526
3.44219 3.69171 4.30767 4.34889 4.44555 4.54131 4.72646 4.82598
4.96960 5.15713 5.17576 5.24131 5.35640 5.38526 5.47059 5.56464
5.68750 5.74969 5.81759 5.93586 6.03408 6.25316 6.32067 6.60481
6.80895 7.11960 7.22936 7.36913 7.48675 7.68710 8.25491 8.64422
8.79729 9.15174 9.41140 10.92025
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.020890 B = 0.005272 C = 0.004383
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1340.006041 B = 5309.882060 C = 6387.370809
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.151 3.849
3 H 0.104 0.896
4 C -0.128 4.128
5 C -0.103 4.103
6 C -0.097 4.097
7 H 0.116 0.884
8 C 0.488 3.512
9 O -0.516 6.516
10 O -0.509 6.509
11 C 0.124 3.876
12 N -0.630 5.630
13 C 0.701 3.299
14 O -0.597 6.597
15 N -0.722 5.722
16 C 0.237 3.763
17 C -0.542 4.542
18 H 0.079 0.921
19 C 0.078 3.922
20 N -0.893 5.893
21 Si 0.876 3.124
22 H -0.273 1.273
23 H -0.284 1.284
24 H -0.260 1.260
25 H 0.065 0.935
26 H 0.060 0.940
27 H 0.057 0.943
28 H 0.081 0.919
29 H 0.071 0.929
30 H 0.077 0.923
31 H 0.074 0.926
32 H 0.411 0.589
33 H 0.096 0.904
34 H 0.072 0.928
35 H 0.392 0.608
36 H 0.024 0.976
37 H 0.018 0.982
38 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.076 -4.206 16.088 18.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.047 3.953
3 H 0.122 0.878
4 C -0.167 4.167
5 C -0.141 4.141
6 C -0.117 4.117
7 H 0.134 0.866
8 C 0.329 3.671
9 O -0.404 6.404
10 O -0.321 6.321
11 C -0.001 4.001
12 N -0.369 5.369
13 C 0.402 3.598
14 O -0.476 6.476
15 N -0.377 5.377
16 C 0.114 3.886
17 C -0.580 4.580
18 H 0.097 0.903
19 C -0.126 4.126
20 N -0.530 5.530
21 Si 0.703 3.297
22 H -0.199 1.199
23 H -0.210 1.210
24 H -0.184 1.184
25 H 0.084 0.916
26 H 0.079 0.921
27 H 0.076 0.924
28 H 0.099 0.901
29 H 0.089 0.911
30 H 0.095 0.905
31 H 0.092 0.908
32 H 0.270 0.730
33 H 0.114 0.886
34 H 0.090 0.910
35 H 0.228 0.772
36 H 0.042 0.958
37 H 0.036 0.964
38 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -8.896 -3.027 16.133 18.670
hybrid contribution 0.140 -0.446 -0.251 0.530
sum -8.756 -3.472 15.882 18.465
Atomic orbital electron populations
1.22168 0.95439 1.02089 1.02389 1.20997 0.93656 0.97635 0.82978
0.87814 1.21969 1.01995 0.94657 0.98041 1.21457 1.01464 0.95350
0.95794 1.21500 1.04287 0.86814 0.99123 0.86560 1.23346 0.76043
0.89643 0.78024 1.90712 1.35636 1.75184 1.38907 1.84597 1.71272
1.27112 1.49101 1.21418 1.01111 0.81339 0.96214 1.47313 1.60405
1.07342 1.21793 1.15997 0.78439 0.85278 0.80059 1.90859 1.65728
1.12136 1.78914 1.45606 1.53767 1.12326 1.25962 1.19380 0.89434
0.93332 0.86406 1.21082 1.32589 0.96473 1.07841 0.90298 1.24771
0.94963 0.97915 0.94912 1.69883 1.35130 1.34816 1.13205 0.86821
0.79949 0.85385 0.77568 1.19879 1.20952 1.18411 0.91613 0.92092
0.92417 0.90074 0.91069 0.90480 0.90773 0.73019 0.88588 0.91020
0.77210 0.95786 0.96418 0.92291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.66 9.02 37.16 0.34 -1.32 16
2 C 0.15 1.83 3.19 -67.60 -0.22 1.62 16
3 H 0.10 1.47 7.04 -51.93 -0.37 1.10 16
4 C -0.13 -1.21 5.55 -26.61 -0.15 -1.36 16
5 C -0.10 -0.96 4.25 -26.69 -0.11 -1.08 16
6 C -0.10 -1.00 2.78 -91.65 -0.25 -1.25 16
7 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16
8 C 0.49 5.16 7.63 36.01 0.27 5.44 16
9 O -0.52 -6.62 16.74 -18.75 -0.31 -6.93 16
10 O -0.51 -4.63 13.35 -39.24 -0.52 -5.16 16
11 C 0.12 1.45 5.23 -3.71 -0.02 1.43 16
12 N -0.63 -9.09 2.68 -170.91 -0.46 -9.55 16
13 C 0.70 13.70 8.30 -86.92 -0.72 12.98 16
14 O -0.60 -13.87 15.79 5.28 0.08 -13.78 16
15 N -0.72 -14.84 5.46 -66.42 -0.36 -15.21 16
16 C 0.24 5.86 4.50 -5.20 -0.02 5.83 16
17 C -0.54 -14.80 9.83 -34.44 -0.34 -15.14 16
18 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16
19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16
20 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16
21 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16
22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
24 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16
25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
27 H 0.06 0.55 5.72 -51.93 -0.30 0.25 16
28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.08 0.73 6.49 -51.93 -0.34 0.39 16
31 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16
32 H 0.41 1.99 9.10 45.56 0.41 2.40 16
33 H 0.10 1.18 5.57 -51.93 -0.29 0.89 16
34 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16
35 H 0.39 7.17 5.78 -40.82 -0.24 6.93 16
36 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16
37 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16
38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
LS Contribution 308.83 15.07 4.65 4.65
Total: -1.00 -34.15 308.83 -6.51 -40.67
By element:
Atomic # 1 Polarization: 9.32 SS G_CDS: -4.38 Total: 4.95 kcal
Atomic # 6 Polarization: 10.57 SS G_CDS: -1.32 Total: 9.25 kcal
Atomic # 7 Polarization: -50.33 SS G_CDS: -0.05 Total: -50.38 kcal
Atomic # 8 Polarization: -25.12 SS G_CDS: -0.75 Total: -25.87 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -34.15 -6.51 -40.67 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001341362663.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -82.484 kcal
(2) G-P(sol) polarization free energy of solvation -34.151 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.149 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds