Wall clock time and date at job start Mon Mar 30 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.58823 * 2 1 4 4 C 1.53187 * 109.59061 * 120.28339 * 2 1 3 5 5 C 1.53041 * 109.31900 * 174.56219 * 4 2 1 6 6 C 1.53042 * 109.53940 * 298.64115 * 5 4 2 7 7 H 1.09002 * 109.49400 * 301.41069 * 6 5 4 8 8 C 1.50693 * 109.49975 * 181.34572 * 6 5 4 9 9 O 1.20827 * 120.00024 * 0.06197 * 8 6 5 10 10 O 1.34225 * 120.00421 * 180.02562 * 8 6 5 11 11 C 1.53192 * 109.33765 * 61.37327 * 6 5 4 12 12 N 1.46928 * 109.70578 * 239.64504 * 2 1 3 13 13 C 1.34776 * 120.62869 * 6.55798 * 12 2 1 14 14 O 1.21595 * 120.00166 * 5.86983 * 13 12 2 15 15 N 1.34773 * 120.00381 * 185.87608 * 13 12 2 16 16 C 1.46500 * 120.00380 * 185.13574 * 15 13 12 17 17 C 1.50697 * 109.47004 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00226 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99888 * 179.97438 * 17 16 15 20 20 N 1.31522 * 120.00116 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00231 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47202 * 60.00095 * 21 19 17 23 23 H 1.48494 * 109.47335 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46933 * 300.00297 * 21 19 17 25 25 H 1.09001 * 109.47222 * 294.16724 * 1 2 3 26 26 H 1.09007 * 109.47338 * 54.16799 * 1 2 3 27 27 H 1.08998 * 109.47335 * 174.16956 * 1 2 3 28 28 H 1.09004 * 109.49852 * 54.61086 * 4 2 1 29 29 H 1.09003 * 109.52575 * 294.53545 * 4 2 1 30 30 H 1.08992 * 109.46209 * 178.61086 * 5 4 2 31 31 H 1.09004 * 109.44234 * 58.64636 * 5 4 2 32 32 H 0.96698 * 117.00723 * 180.02562 * 10 8 6 33 33 H 1.09000 * 109.58778 * 65.14302 * 11 6 5 34 34 H 1.09007 * 109.57969 * 185.56418 * 11 6 5 35 35 H 0.97007 * 119.99613 * 5.13339 * 15 13 12 36 36 H 1.09002 * 109.47058 * 299.99614 * 16 15 13 37 37 H 1.08998 * 109.47293 * 59.99428 * 16 15 13 38 38 H 0.96994 * 119.99921 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5678 -0.8434 1.1729 6 6 3.9604 -1.6608 -0.0600 7 1 3.5036 -2.6488 -0.0019 8 6 5.4597 -1.8021 -0.1134 9 8 6.1447 -1.3016 0.7470 10 8 6.0343 -2.4846 -1.1162 11 6 3.4691 -0.9438 -1.3215 12 7 2.0253 -0.6990 -1.1936 13 6 1.1722 -1.1077 -2.1536 14 8 -0.0042 -0.8066 -2.0900 15 7 1.6228 -1.8503 -3.1841 16 6 0.7212 -2.1997 -4.2847 17 6 1.4657 -3.0273 -5.3004 18 1 2.5065 -3.2685 -5.1423 19 6 0.8182 -3.4766 -6.4318 20 7 -0.4491 -3.1824 -6.6247 21 14 1.7412 -4.5018 -7.6913 22 1 2.2421 -5.7430 -7.0480 23 1 0.8273 -4.8561 -8.8068 24 1 2.8881 -3.7209 -8.2205 25 1 -0.3634 0.4207 0.9376 26 1 -0.3634 0.6016 -0.8332 27 1 -0.3634 -1.0223 -0.1044 28 1 1.6049 -1.7246 1.2921 29 1 1.7638 -0.1659 2.1375 30 1 3.9380 -1.3390 2.0702 31 1 4.0043 0.1529 1.1020 32 1 6.9991 -2.5485 -1.1076 33 1 3.9926 0.0062 -1.4292 34 1 3.6586 -1.5689 -2.1942 35 1 2.5442 -2.1534 -3.1970 36 1 -0.1213 -2.7720 -3.8964 37 1 0.3546 -1.2885 -4.7572 38 1 -0.9045 -3.4982 -7.4207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341362665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:24 Heat of formation + Delta-G solvation = -113.695789 kcal Electronic energy + Delta-G solvation = -21473.195561 eV Core-core repulsion = 18122.991178 eV Total energy + Delta-G solvation = -3350.204383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91045 -39.84287 -37.24555 -36.28027 -34.61573 -32.99824 -32.75697 -31.70632 -28.10334 -26.91563 -24.94797 -23.52173 -22.88725 -21.30928 -20.41328 -19.29727 -18.25354 -17.80914 -16.65341 -16.42993 -15.91945 -15.49361 -15.12598 -14.67025 -14.36408 -13.98633 -13.88473 -13.60059 -13.29671 -13.00521 -12.54074 -12.17689 -12.05433 -11.87560 -11.76651 -11.72932 -11.20896 -11.01580 -10.98280 -10.90312 -10.88090 -10.84817 -10.68373 -10.24218 -9.37063 -8.71426 -8.68982 -8.39909 -7.74429 -6.14522 -4.21062 1.94795 2.74039 3.15488 3.26398 3.31527 3.33330 3.84367 4.31245 4.33550 4.56262 4.58013 4.76047 4.93048 5.05518 5.20806 5.21603 5.29678 5.42209 5.57619 5.61396 5.67723 5.77744 5.84986 5.99447 6.09412 6.28362 6.46766 6.60057 6.97799 7.11938 7.51715 7.55115 7.57915 7.67266 7.84487 8.02725 8.75846 8.89421 9.32066 9.48085 10.95624 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.005400 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.927640 B = 5184.188257 C = 6606.892671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.160 3.840 3 H 0.066 0.934 4 C -0.132 4.132 5 C -0.101 4.101 6 C -0.098 4.098 7 H 0.116 0.884 8 C 0.488 3.512 9 O -0.516 6.516 10 O -0.511 6.511 11 C 0.126 3.874 12 N -0.635 5.635 13 C 0.697 3.303 14 O -0.586 6.586 15 N -0.730 5.730 16 C 0.267 3.733 17 C -0.542 4.542 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.410 0.590 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.385 0.615 36 H 0.026 0.974 37 H 0.024 0.976 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.520 3.670 14.176 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 H 0.084 0.916 4 C -0.170 4.170 5 C -0.139 4.139 6 C -0.118 4.118 7 H 0.134 0.866 8 C 0.330 3.670 9 O -0.404 6.404 10 O -0.322 6.322 11 C 0.002 3.998 12 N -0.374 5.374 13 C 0.399 3.601 14 O -0.465 6.465 15 N -0.385 5.385 16 C 0.146 3.854 17 C -0.581 4.581 18 H 0.079 0.921 19 C -0.139 4.139 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.269 0.731 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.219 0.781 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.196 4.029 14.240 17.424 hybrid contribution 1.738 -0.873 -0.732 2.078 sum 10.934 3.156 13.509 17.663 Atomic orbital electron populations 1.22154 0.92218 1.04353 1.00417 1.21055 0.96155 0.94342 0.82849 0.91613 1.22074 0.94475 1.02109 0.98348 1.21427 0.96287 1.00434 0.95760 1.21532 0.87368 1.03623 0.99311 0.86624 1.23368 0.91833 0.73838 0.77997 1.90713 1.65223 1.45605 1.38864 1.84587 1.29219 1.69252 1.49155 1.21414 0.82350 1.00106 0.95979 1.47379 1.05204 1.62806 1.22053 1.16086 0.84676 0.79520 0.79793 1.90914 1.15348 1.62479 1.77734 1.46019 1.15630 1.54183 1.22643 1.18974 0.88884 0.95670 0.81897 1.21185 0.97457 1.34097 1.05320 0.92055 1.24931 0.94909 0.96139 0.97945 1.69968 1.09574 1.44888 1.27870 0.86486 0.79455 0.80435 0.80584 1.20093 1.21097 1.20101 0.94512 0.89971 0.91388 0.91079 0.90173 0.90772 0.90794 0.73083 0.91133 0.88631 0.78063 0.95631 0.95826 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 7.61 37.15 0.28 -1.70 16 2 C 0.16 2.06 3.49 -67.61 -0.24 1.82 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -1.33 5.37 -26.61 -0.14 -1.47 16 5 C -0.10 -0.99 4.46 -26.69 -0.12 -1.10 16 6 C -0.10 -1.02 2.78 -91.65 -0.25 -1.27 16 7 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 8 C 0.49 5.15 7.63 36.00 0.27 5.43 16 9 O -0.52 -6.65 16.74 -18.75 -0.31 -6.97 16 10 O -0.51 -4.49 13.35 -39.24 -0.52 -5.01 16 11 C 0.13 1.52 5.65 -3.68 -0.02 1.50 16 12 N -0.63 -9.53 2.97 -170.86 -0.51 -10.04 16 13 C 0.70 13.98 8.11 -86.92 -0.70 13.28 16 14 O -0.59 -13.64 11.93 5.28 0.06 -13.57 16 15 N -0.73 -15.42 5.44 -66.42 -0.36 -15.78 16 16 C 0.27 7.04 5.43 -5.19 -0.03 7.01 16 17 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 18 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 21 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 1.44 6.57 -51.93 -0.34 1.10 16 27 H 0.07 1.17 6.94 -51.93 -0.36 0.81 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 32 H 0.41 1.86 9.10 45.56 0.41 2.27 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.18 5.59 -51.93 -0.29 0.89 16 35 H 0.38 7.09 5.83 -40.82 -0.24 6.85 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -33.18 311.10 -7.18 -40.36 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.57 Total: 5.61 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -1.37 Total: 10.23 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.13 Total: -51.04 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.77 Total: -25.55 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.18 -7.18 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341362665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.341 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds