Wall clock time and date at job start Mon Mar 30 2020 02:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.58823 * 2 1 4 4 C 1.53187 * 109.59061 * 120.28339 * 2 1 3 5 5 C 1.53041 * 109.31900 * 174.56219 * 4 2 1 6 6 C 1.53042 * 109.53940 * 298.64115 * 5 4 2 7 7 H 1.09002 * 109.49400 * 301.41069 * 6 5 4 8 8 C 1.50693 * 109.49975 * 181.34572 * 6 5 4 9 9 O 1.20827 * 120.00024 * 0.06197 * 8 6 5 10 10 O 1.34225 * 120.00421 * 180.02562 * 8 6 5 11 11 C 1.53192 * 109.33765 * 61.37327 * 6 5 4 12 12 N 1.46928 * 109.70578 * 239.64504 * 2 1 3 13 13 C 1.34776 * 120.62869 * 6.55798 * 12 2 1 14 14 O 1.21595 * 120.00166 * 5.86983 * 13 12 2 15 15 N 1.34773 * 120.00381 * 185.87608 * 13 12 2 16 16 C 1.46500 * 120.00380 * 185.13574 * 15 13 12 17 17 C 1.50697 * 109.47004 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00226 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99888 * 179.97438 * 17 16 15 20 20 N 1.31522 * 120.00116 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00231 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47202 * 60.00095 * 21 19 17 23 23 H 1.48494 * 109.47335 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46933 * 300.00297 * 21 19 17 25 25 H 1.09001 * 109.47222 * 294.16724 * 1 2 3 26 26 H 1.09007 * 109.47338 * 54.16799 * 1 2 3 27 27 H 1.08998 * 109.47335 * 174.16956 * 1 2 3 28 28 H 1.09004 * 109.49852 * 54.61086 * 4 2 1 29 29 H 1.09003 * 109.52575 * 294.53545 * 4 2 1 30 30 H 1.08992 * 109.46209 * 178.61086 * 5 4 2 31 31 H 1.09004 * 109.44234 * 58.64636 * 5 4 2 32 32 H 0.96698 * 117.00723 * 180.02562 * 10 8 6 33 33 H 1.09000 * 109.58778 * 65.14302 * 11 6 5 34 34 H 1.09007 * 109.57969 * 185.56418 * 11 6 5 35 35 H 0.97007 * 119.99613 * 5.13339 * 15 13 12 36 36 H 1.09002 * 109.47058 * 299.99614 * 16 15 13 37 37 H 1.08998 * 109.47293 * 59.99428 * 16 15 13 38 38 H 0.96994 * 119.99921 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5678 -0.8434 1.1729 6 6 3.9604 -1.6608 -0.0600 7 1 3.5036 -2.6488 -0.0019 8 6 5.4597 -1.8021 -0.1134 9 8 6.1447 -1.3016 0.7470 10 8 6.0343 -2.4846 -1.1162 11 6 3.4691 -0.9438 -1.3215 12 7 2.0253 -0.6990 -1.1936 13 6 1.1722 -1.1077 -2.1536 14 8 -0.0042 -0.8066 -2.0900 15 7 1.6228 -1.8503 -3.1841 16 6 0.7212 -2.1997 -4.2847 17 6 1.4657 -3.0273 -5.3004 18 1 2.5065 -3.2685 -5.1423 19 6 0.8182 -3.4766 -6.4318 20 7 -0.4491 -3.1824 -6.6247 21 14 1.7412 -4.5018 -7.6913 22 1 2.2421 -5.7430 -7.0480 23 1 0.8273 -4.8561 -8.8068 24 1 2.8881 -3.7209 -8.2205 25 1 -0.3634 0.4207 0.9376 26 1 -0.3634 0.6016 -0.8332 27 1 -0.3634 -1.0223 -0.1044 28 1 1.6049 -1.7246 1.2921 29 1 1.7638 -0.1659 2.1375 30 1 3.9380 -1.3390 2.0702 31 1 4.0043 0.1529 1.1020 32 1 6.9991 -2.5485 -1.1076 33 1 3.9926 0.0062 -1.4292 34 1 3.6586 -1.5689 -2.1942 35 1 2.5442 -2.1534 -3.1970 36 1 -0.1213 -2.7720 -3.8964 37 1 0.3546 -1.2885 -4.7572 38 1 -0.9045 -3.4982 -7.4207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341362665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:23 Heat of formation + Delta-G solvation = -137.903152 kcal Electronic energy + Delta-G solvation = -21474.245271 eV Core-core repulsion = 18122.991178 eV Total energy + Delta-G solvation = -3351.254093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.94776 -41.03168 -38.48182 -37.10459 -36.36362 -34.73474 -33.89161 -33.20932 -29.45512 -28.61461 -26.08856 -24.89211 -24.25345 -22.58910 -21.48288 -20.71717 -19.24351 -19.01935 -18.02655 -17.67733 -17.28850 -16.92490 -16.39098 -16.32661 -15.50377 -15.23389 -15.09222 -14.75059 -14.54996 -14.43315 -13.98405 -13.71837 -13.49260 -13.16890 -13.13630 -12.82795 -12.65828 -12.53462 -12.20522 -12.18402 -12.01455 -11.93464 -11.76644 -11.56571 -11.44180 -10.75376 -10.27163 -9.90880 -9.39881 -8.25615 -6.41755 1.11598 1.44940 1.49194 1.56967 1.71313 2.12671 2.26299 2.40910 3.09342 3.15524 3.48768 3.67139 3.84199 3.96664 4.14233 4.34570 4.38636 4.41482 4.63714 4.65971 4.77663 4.87067 4.98250 5.07404 5.09737 5.15241 5.31718 5.39260 5.40698 5.50543 5.61078 5.77144 5.80063 5.89248 6.11430 6.69865 6.99419 7.21032 7.28498 7.76363 8.86344 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.005400 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.927640 B = 5184.188257 C = 6606.892671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.086 0.914 4 C -0.121 4.121 5 C -0.096 4.096 6 C -0.094 4.094 7 H 0.117 0.883 8 C 0.498 3.502 9 O -0.539 6.539 10 O -0.511 6.511 11 C 0.123 3.877 12 N -0.625 5.625 13 C 0.693 3.307 14 O -0.625 6.625 15 N -0.727 5.727 16 C 0.287 3.713 17 C -0.555 4.555 18 H 0.081 0.919 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.262 1.262 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.429 0.571 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.399 0.601 36 H -0.014 1.014 37 H -0.015 1.015 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.222 3.317 15.073 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.104 0.896 4 C -0.159 4.159 5 C -0.134 4.134 6 C -0.114 4.114 7 H 0.135 0.865 8 C 0.341 3.659 9 O -0.429 6.429 10 O -0.324 6.324 11 C 0.000 4.000 12 N -0.363 5.363 13 C 0.395 3.605 14 O -0.507 6.507 15 N -0.383 5.383 16 C 0.164 3.836 17 C -0.592 4.592 18 H 0.100 0.900 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.187 1.187 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.292 0.708 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.237 0.763 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.981 3.684 15.187 19.692 hybrid contribution 0.888 -0.712 -0.950 1.483 sum 12.870 2.972 14.237 19.421 Atomic orbital electron populations 1.21964 0.93900 1.01876 1.00656 1.21345 0.94870 0.95678 0.83091 0.89615 1.21999 0.94703 1.01659 0.97518 1.21402 0.95651 1.00648 0.95658 1.21470 0.87623 1.03673 0.98673 0.86465 1.23183 0.91557 0.73386 0.77804 1.90715 1.65659 1.46708 1.39809 1.84547 1.31095 1.68519 1.48267 1.21592 0.80268 1.01266 0.96902 1.47358 1.06031 1.61638 1.21270 1.16276 0.84731 0.79225 0.80275 1.90912 1.17451 1.63635 1.78708 1.45630 1.15635 1.55007 1.22068 1.18371 0.88798 0.93340 0.83092 1.21560 0.98359 1.33909 1.05420 0.90049 1.26023 0.95701 0.97308 1.00344 1.70135 1.11678 1.46318 1.28760 0.85234 0.78061 0.78795 0.77286 1.18712 1.21144 1.18663 0.91180 0.93428 0.94469 0.91849 0.87460 0.89788 0.90297 0.70844 0.89366 0.89061 0.76313 0.99647 0.99678 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 7.61 71.98 0.55 -3.21 16 2 C 0.15 3.70 3.49 44.97 0.16 3.85 16 3 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.12 -2.09 5.37 30.67 0.16 -1.93 16 5 C -0.10 -1.56 4.46 30.62 0.14 -1.42 16 6 C -0.09 -1.72 2.78 -11.46 -0.03 -1.75 16 7 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 8 C 0.50 9.16 7.63 71.23 0.54 9.70 16 9 O -0.54 -12.45 16.74 21.96 0.37 -12.08 16 10 O -0.51 -7.54 13.35 -51.36 -0.69 -8.23 16 11 C 0.12 2.72 5.65 86.35 0.49 3.20 16 12 N -0.62 -18.30 2.97 -812.73 -2.42 -20.72 16 13 C 0.69 28.57 8.11 179.06 1.45 30.02 16 14 O -0.63 -30.77 11.93 -4.01 -0.05 -30.82 16 15 N -0.73 -31.47 5.44 -482.30 -2.62 -34.10 16 16 C 0.29 15.88 5.43 85.63 0.47 16.35 16 17 C -0.55 -30.17 9.28 25.60 0.24 -29.93 16 18 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 19 C 0.01 0.33 5.46 84.65 0.46 0.79 16 20 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 21 Si 0.98 42.10 29.54 68.60 2.03 44.13 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 1.73 6.57 -2.38 -0.02 1.72 16 27 H 0.04 1.31 6.94 -2.39 -0.02 1.30 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.27 8.07 -2.39 -0.02 1.26 16 31 H 0.08 1.26 8.13 -2.38 -0.02 1.24 16 32 H 0.43 2.65 9.10 -74.06 -0.67 1.98 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.09 2.10 5.59 -2.38 -0.01 2.08 16 35 H 0.40 14.61 5.83 -92.70 -0.54 14.07 16 36 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -74.83 311.10 1.40 -73.43 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.13 Total: 18.51 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 4.62 Total: 25.66 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.76 Total: -110.61 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.37 Total: -51.13 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -74.83 1.40 -73.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341362665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.472 kcal (2) G-P(sol) polarization free energy of solvation -74.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds