Wall clock time and date at job start Mon Mar 30 2020 02:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.56755 * 2 1 4 4 C 1.54474 * 110.51003 * 237.31699 * 2 1 3 5 5 O 1.44426 * 104.80018 * 217.37977 * 4 2 1 6 6 C 1.44429 * 105.27706 * 40.51490 * 5 4 2 7 7 C 1.54477 * 104.79905 * 319.48678 * 6 5 4 8 8 H 1.09003 * 110.51027 * 265.19333 * 7 6 5 9 9 N 1.46499 * 110.50948 * 142.62479 * 7 6 5 10 10 C 1.34784 * 119.99971 * 86.45251 * 9 7 6 11 11 O 1.21346 * 119.99779 * 359.97438 * 10 9 7 12 12 C 1.49449 * 119.99546 * 180.02562 * 10 9 7 13 13 O 1.21341 * 120.00649 * 0.26924 * 12 10 9 14 14 N 1.34784 * 119.99546 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 10 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47257 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99988 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00042 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00041 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 120.00110 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46667 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46924 * 120.00054 * 21 19 17 24 24 H 1.48500 * 109.47133 * 240.00308 * 21 19 17 25 25 H 1.09002 * 109.47290 * 297.32743 * 1 2 3 26 26 H 1.09006 * 109.46721 * 57.32370 * 1 2 3 27 27 H 1.08998 * 109.47595 * 177.31851 * 1 2 3 28 28 H 1.08998 * 110.37278 * 98.55318 * 4 2 1 29 29 H 1.08996 * 110.37812 * 336.20851 * 4 2 1 30 30 H 1.09004 * 110.36918 * 200.65477 * 6 5 4 31 31 H 1.08995 * 110.46300 * 78.36838 * 6 5 4 32 32 H 0.96999 * 119.99984 * 266.45404 * 9 7 6 33 33 H 0.96999 * 120.00044 * 359.97438 * 14 12 10 34 34 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 35 35 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 36 36 H 1.09004 * 109.47330 * 300.00096 * 16 15 14 37 37 H 1.09005 * 109.47124 * 59.99892 * 16 15 14 38 38 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7813 -1.2177 5 8 3.2398 -1.4714 -0.7236 6 6 2.8756 -1.9422 0.5923 7 6 2.0713 -0.7813 1.2181 8 1 2.7214 -0.1485 1.8223 9 7 0.9660 -1.3004 2.0275 10 6 1.1722 -1.6291 3.3182 11 8 2.2736 -1.4956 3.8098 12 6 0.0447 -2.1592 4.1436 13 8 -1.0552 -2.2982 3.6505 14 7 0.2512 -2.4884 5.4342 15 6 -0.8542 -3.0075 6.2436 16 6 -0.3557 -3.2994 7.6603 17 6 -1.4926 -3.8339 8.4926 18 1 -2.4726 -3.9539 8.0548 19 6 -1.2815 -4.1708 9.8128 20 7 -0.0880 -4.0252 10.3458 21 14 -2.6909 -4.8328 10.8448 22 1 -3.9216 -4.9002 10.0166 23 1 -2.3495 -6.1924 11.3349 24 1 -2.9217 -3.9325 12.0030 25 1 -0.3634 0.4718 0.9130 26 1 -0.3633 0.5549 -0.8651 27 1 -0.3634 -1.0265 -0.0481 28 1 2.3465 -0.0940 -2.0177 29 1 1.3286 -1.4970 -1.5701 30 1 3.7687 -2.1468 1.1827 31 1 2.2568 -2.8366 0.5193 32 1 0.0857 -1.4075 1.6344 33 1 1.1315 -2.3817 5.8272 34 1 -1.6530 -2.2670 6.2851 35 1 -1.2330 -3.9259 5.7949 36 1 0.4433 -4.0397 7.6190 37 1 0.0228 -2.3808 8.1087 38 1 0.0604 -4.2619 11.2747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341948342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:36 Heat of formation + Delta-G solvation = -145.585720 kcal Electronic energy + Delta-G solvation = -20406.633457 eV Core-core repulsion = 17055.046222 eV Total energy + Delta-G solvation = -3351.587234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99257 -40.70272 -39.37953 -36.96877 -36.14482 -34.84415 -33.40074 -31.71147 -30.18915 -27.42229 -27.28786 -25.45598 -23.75237 -22.86254 -21.71059 -20.99195 -19.76464 -18.60626 -18.02254 -17.33551 -17.16628 -17.07206 -16.51427 -16.40541 -16.21528 -15.93939 -15.44024 -15.01263 -14.65758 -14.45935 -14.31719 -13.71857 -13.34327 -13.26100 -13.22270 -12.96695 -12.86402 -12.51504 -12.30219 -12.14504 -12.03155 -11.76737 -11.69248 -11.42310 -10.92500 -10.75231 -10.62827 -10.39683 -10.21508 -8.24069 -6.35229 0.26467 1.23416 1.42360 1.43632 1.56495 2.06339 2.38655 2.57933 3.02234 3.11160 3.28891 3.41874 3.67806 3.79584 4.04812 4.15960 4.37869 4.39713 4.44637 4.59150 4.63684 4.69157 4.80529 4.80776 4.91405 5.02132 5.05898 5.14178 5.24775 5.41839 5.54353 5.70062 5.74996 5.87439 6.12328 6.31035 6.65364 6.78953 6.88591 7.34589 8.88200 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050111 B = 0.002973 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.623670 B = 9415.949282 C = 9741.605973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 H 0.110 0.890 4 C 0.043 3.957 5 O -0.388 6.388 6 C 0.035 3.965 7 C 0.109 3.891 8 H 0.100 0.900 9 N -0.680 5.680 10 C 0.515 3.485 11 O -0.537 6.537 12 C 0.500 3.500 13 O -0.547 6.547 14 N -0.688 5.688 15 C 0.138 3.862 16 C 0.018 3.982 17 C -0.544 4.544 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.278 1.278 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.422 0.578 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.007 0.993 37 H 0.008 0.992 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 8.283 -22.996 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 H 0.129 0.871 4 C -0.033 4.033 5 O -0.306 6.306 6 C -0.043 4.043 7 C 0.004 3.996 8 H 0.118 0.882 9 N -0.338 5.338 10 C 0.295 3.705 11 O -0.413 6.413 12 C 0.281 3.719 13 O -0.426 6.426 14 N -0.339 5.339 15 C 0.015 3.985 16 C -0.019 4.019 17 C -0.582 4.582 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.792 3.208 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.204 1.204 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.264 0.736 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.892 8.225 -22.961 24.561 hybrid contribution -0.512 -0.433 1.151 1.332 sum 2.380 7.792 -21.810 23.282 Atomic orbital electron populations 1.21836 0.92705 1.02824 1.03837 1.22796 0.97966 1.01043 0.92486 0.87142 1.23785 0.87545 0.95522 0.96489 1.89162 1.36524 1.74290 1.30655 1.23822 1.00196 0.96251 0.83988 1.22583 0.88143 0.95833 0.92997 0.88187 1.45985 1.15348 1.63250 1.09220 1.20055 0.87920 0.78799 0.83684 1.90766 1.25289 1.52878 1.72411 1.20279 0.88656 0.79650 0.83327 1.90717 1.25617 1.54268 1.71992 1.46078 1.15510 1.62034 1.10249 1.21489 0.87958 0.98019 0.91031 1.19182 0.96531 0.96178 0.90057 1.21483 0.96808 1.43544 0.96375 0.91659 1.25921 0.98455 0.95736 0.99316 1.70083 1.23306 1.49067 1.14370 0.85355 0.79184 0.77892 0.78352 1.18549 1.20423 1.20394 0.92001 0.89291 0.91843 0.86643 0.90869 0.88751 0.91536 0.73610 0.74902 0.91903 0.91936 0.97432 0.97401 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.79 71.98 0.56 -0.90 16 2 C -0.12 -1.39 3.72 -9.78 -0.04 -1.42 16 3 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.04 0.49 7.18 72.48 0.52 1.01 16 5 O -0.39 -7.24 11.65 -148.98 -1.74 -8.98 16 6 C 0.04 0.66 7.35 72.48 0.53 1.19 16 7 C 0.11 1.90 3.40 46.01 0.16 2.06 16 8 H 0.10 1.96 7.67 -2.39 -0.02 1.94 16 9 N -0.68 -14.01 4.64 -439.06 -2.04 -16.04 16 10 C 0.52 14.38 7.89 87.27 0.69 15.07 16 11 O -0.54 -17.15 16.19 -3.23 -0.05 -17.20 16 12 C 0.50 16.39 7.89 87.27 0.69 17.07 16 13 O -0.55 -19.45 16.48 -3.22 -0.05 -19.50 16 14 N -0.69 -24.49 5.55 -464.41 -2.58 -27.07 16 15 C 0.14 5.67 5.61 86.38 0.48 6.15 16 16 C 0.02 0.90 5.09 29.85 0.15 1.05 16 17 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 18 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.00 0.24 5.46 84.65 0.46 0.70 16 20 N -0.93 -54.65 13.29 21.45 0.28 -54.37 16 21 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H 0.06 0.71 7.73 -2.39 -0.02 0.69 16 26 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.06 0.61 6.99 -2.39 -0.02 0.59 16 28 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.72 7.83 -2.39 -0.02 0.70 16 30 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.07 1.22 8.06 -2.39 -0.02 1.20 16 32 H 0.42 7.69 5.28 -92.71 -0.49 7.20 16 33 H 0.41 14.26 7.94 -92.71 -0.74 13.53 16 34 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -65.74 321.82 0.15 -65.59 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.15 Total: 20.00 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 4.44 Total: 12.45 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -4.33 Total: -97.48 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -1.84 Total: -45.68 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.74 0.15 -65.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341948342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.998 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds