Wall clock time and date at job start Mon Mar 30 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 110.82920 * 2 1 4 4 C 1.54995 * 110.90918 * 123.64755 * 2 1 3 5 5 O 1.44377 * 103.49206 * 155.22398 * 4 2 1 6 6 C 1.43747 * 106.97305 * 319.94118 * 5 4 2 7 7 C 1.54091 * 107.29559 * 26.51488 * 6 5 4 8 8 H 1.09003 * 110.49387 * 116.77659 * 7 6 5 9 9 N 1.46499 * 110.48695 * 239.29388 * 7 6 5 10 10 C 1.34777 * 120.00065 * 273.54344 * 9 7 6 11 11 O 1.21353 * 119.99605 * 359.97438 * 10 9 7 12 12 C 1.49454 * 120.00164 * 180.02562 * 10 9 7 13 13 O 1.21343 * 119.99752 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99586 * 180.02562 * 12 10 9 15 15 C 1.46499 * 119.99486 * 179.97438 * 14 12 10 16 16 C 1.53004 * 109.47198 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47208 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 300.00001 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00094 * 21 19 17 25 25 H 1.09002 * 109.47075 * 183.64155 * 1 2 3 26 26 H 1.08994 * 109.47283 * 303.64520 * 1 2 3 27 27 H 1.09007 * 109.47501 * 63.64758 * 1 2 3 28 28 H 1.08999 * 110.61649 * 36.72135 * 4 2 1 29 29 H 1.09005 * 110.75159 * 273.78762 * 4 2 1 30 30 H 1.08997 * 109.87667 * 267.08551 * 6 5 4 31 31 H 1.09006 * 109.99960 * 146.00721 * 6 5 4 32 32 H 0.97000 * 120.00386 * 93.54713 * 9 7 6 33 33 H 0.96991 * 120.00732 * 359.97438 * 14 12 10 34 34 H 1.09000 * 109.47602 * 59.99571 * 15 14 12 35 35 H 1.08998 * 109.47492 * 299.99559 * 15 14 12 36 36 H 1.08994 * 109.47074 * 60.00190 * 16 15 14 37 37 H 1.08998 * 109.47285 * 300.00026 * 16 15 14 38 38 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0831 -0.8022 1.2053 5 8 3.3941 -1.2143 0.7626 6 6 3.2718 -1.5881 -0.6201 7 6 2.0825 -0.8012 -1.2039 8 1 2.4205 -0.1268 -1.9907 9 7 1.0640 -1.7192 -1.7197 10 6 1.1550 -2.1874 -2.9803 11 8 2.0805 -1.8481 -3.6881 12 6 0.1156 -3.1234 -3.5067 13 8 -0.8100 -3.4623 -2.7990 14 7 0.2071 -3.5919 -4.7671 15 6 -0.8115 -4.5099 -5.2829 16 6 -0.4745 -4.8862 -6.7272 17 6 -1.5219 -5.8310 -7.2576 18 1 -2.3458 -6.1326 -6.6277 19 6 -1.4284 -6.3104 -8.5469 20 7 -0.4250 -5.9436 -9.3137 21 14 -2.7271 -7.4810 -9.2046 22 1 -2.4000 -7.8463 -10.6063 23 1 -2.7580 -8.7071 -8.3673 24 1 -4.0561 -6.8197 -9.1633 25 1 -0.3633 -1.0256 0.0653 26 1 -0.3633 0.5693 0.8555 27 1 -0.3634 0.4562 -0.9209 28 1 1.4562 -1.6704 1.4087 29 1 2.1580 -0.1688 2.0892 30 1 3.0826 -2.6586 -0.6992 31 1 4.1850 -1.3325 -1.1576 32 1 0.3240 -1.9901 -1.1541 33 1 0.9471 -3.3213 -5.3327 34 1 -1.7870 -4.0246 -5.2524 35 1 -0.8341 -5.4099 -4.6685 36 1 0.5010 -5.3714 -6.7580 37 1 -0.4522 -3.9860 -7.3414 38 1 0.2492 -5.3354 -8.9723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341948343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:40 Heat of formation + Delta-G solvation = -127.203728 kcal Electronic energy + Delta-G solvation = -20471.983878 eV Core-core repulsion = 17121.193746 eV Total energy + Delta-G solvation = -3350.790131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00407 -39.73737 -38.21712 -35.68796 -35.01504 -33.20087 -32.69287 -29.79126 -29.38026 -26.76325 -25.53535 -23.80072 -22.78347 -21.48419 -20.63383 -20.36528 -18.65665 -17.27970 -16.76519 -16.45262 -16.15165 -15.98194 -15.47562 -15.17427 -15.08065 -14.29139 -13.97899 -13.87219 -13.72697 -13.31408 -13.09786 -12.70860 -12.41674 -12.31212 -11.77493 -11.72600 -11.57423 -11.50458 -11.16697 -11.05125 -10.52637 -10.24905 -10.11127 -10.04851 -9.59351 -9.53271 -8.82695 -8.74045 -8.42500 -6.47593 -4.18706 1.45210 2.34344 3.26203 3.40733 3.42331 3.48601 3.61212 3.74768 3.90902 4.26302 4.40053 4.47268 4.61193 4.67850 4.82065 4.90488 5.08436 5.21647 5.28612 5.30573 5.45882 5.51228 5.55276 5.72014 5.95594 5.98149 6.06856 6.41482 6.43122 6.51060 6.87515 7.14840 7.26391 7.49698 7.76280 7.99592 8.17562 8.33068 8.74999 9.53681 10.93484 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047619 B = 0.003015 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.861607 B = 9284.756455 C = 9550.111895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 H 0.102 0.898 4 C 0.047 3.953 5 O -0.374 6.374 6 C 0.036 3.964 7 C 0.112 3.888 8 H 0.109 0.891 9 N -0.699 5.699 10 C 0.509 3.491 11 O -0.517 6.517 12 C 0.498 3.502 13 O -0.531 6.531 14 N -0.687 5.687 15 C 0.126 3.874 16 C -0.002 4.002 17 C -0.605 4.605 18 H 0.054 0.946 19 C 0.018 3.982 20 N -0.908 5.908 21 Si 1.072 2.928 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.287 1.287 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.414 0.586 33 H 0.410 0.590 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 12.439 19.567 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 H 0.120 0.880 4 C -0.030 4.030 5 O -0.292 6.292 6 C -0.042 4.042 7 C 0.007 3.993 8 H 0.127 0.873 9 N -0.356 5.356 10 C 0.290 3.710 11 O -0.392 6.392 12 C 0.277 3.723 13 O -0.409 6.409 14 N -0.338 5.338 15 C 0.004 3.996 16 C -0.039 4.039 17 C -0.644 4.644 18 H 0.072 0.928 19 C -0.186 4.186 20 N -0.543 5.543 21 Si 0.899 3.101 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.213 1.213 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.253 0.747 33 H 0.245 0.755 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.959 11.535 18.316 22.005 hybrid contribution 0.309 0.898 1.222 1.547 sum 4.269 12.432 19.538 23.548 Atomic orbital electron populations 1.21717 0.93126 1.02472 1.03149 1.23022 0.97508 1.00596 0.94025 0.87989 1.23715 0.84428 0.97762 0.97046 1.88911 1.28885 1.86413 1.25034 1.23688 0.98926 0.99244 0.82337 1.22415 0.88215 0.91379 0.97291 0.87273 1.45972 1.28727 1.47080 1.13830 1.20512 0.86314 0.81732 0.82414 1.90763 1.33571 1.57540 1.57301 1.19936 0.86134 0.82546 0.83655 1.90735 1.33824 1.58952 1.57393 1.46235 1.29104 1.45982 1.12490 1.21785 0.89469 0.90992 0.97322 1.19483 0.98063 0.97072 0.89323 1.21847 1.10869 1.30541 1.01098 0.92776 1.25900 1.00306 0.98838 0.93599 1.70800 1.11905 1.32792 1.38845 0.83496 0.74672 0.75601 0.76281 1.20687 1.21285 1.21299 0.92016 0.91385 0.91420 0.91796 0.88449 0.91559 0.88565 0.74654 0.75461 0.91640 0.91633 0.96554 0.96560 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.46 37.15 0.31 -0.57 16 2 C -0.13 -0.87 3.70 -88.61 -0.33 -1.20 16 3 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.05 0.33 7.17 38.21 0.27 0.61 16 5 O -0.37 -3.76 11.52 -35.23 -0.41 -4.17 16 6 C 0.04 0.35 7.50 37.73 0.28 0.63 16 7 C 0.11 1.02 3.24 -66.41 -0.22 0.80 16 8 H 0.11 1.05 7.66 -51.93 -0.40 0.65 16 9 N -0.70 -7.54 4.51 -52.76 -0.24 -7.78 16 10 C 0.51 7.21 7.88 -11.58 -0.09 7.12 16 11 O -0.52 -8.22 16.19 5.49 0.09 -8.13 16 12 C 0.50 8.28 7.89 -11.58 -0.09 8.19 16 13 O -0.53 -9.72 16.48 5.50 0.09 -9.62 16 14 N -0.69 -12.20 5.55 -60.73 -0.34 -12.54 16 15 C 0.13 2.61 5.61 -4.04 -0.02 2.59 16 16 C 0.00 -0.05 4.40 -27.88 -0.12 -0.17 16 17 C -0.60 -16.77 9.11 -34.44 -0.31 -17.08 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 20 N -0.91 -27.20 13.65 55.43 0.76 -26.44 16 21 Si 1.07 24.77 29.90 -169.99 -5.08 19.68 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 25 H 0.06 0.39 6.26 -51.93 -0.33 0.06 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.43 8.01 -51.93 -0.42 0.01 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.41 4.10 5.76 -40.82 -0.24 3.86 16 33 H 0.41 6.88 7.94 -40.82 -0.32 6.55 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 37 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 38 H 0.27 7.97 7.22 -40.82 -0.29 7.68 16 LS Contribution 321.09 15.07 4.84 4.84 Total: -1.00 -31.96 321.09 -6.10 -38.06 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.40 Total: 4.77 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.41 Total: 1.33 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.18 Total: -46.76 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.23 Total: -21.93 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.96 -6.10 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341948343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.143 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds