Wall clock time and date at job start Mon Mar 30 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 110.82920 * 2 1 4 4 C 1.54995 * 110.90918 * 123.64755 * 2 1 3 5 5 O 1.44377 * 103.49206 * 155.22398 * 4 2 1 6 6 C 1.43747 * 106.97305 * 319.94118 * 5 4 2 7 7 C 1.54091 * 107.29559 * 26.51488 * 6 5 4 8 8 H 1.09003 * 110.49387 * 116.77659 * 7 6 5 9 9 N 1.46499 * 110.48695 * 239.29388 * 7 6 5 10 10 C 1.34777 * 120.00065 * 273.54344 * 9 7 6 11 11 O 1.21353 * 119.99605 * 359.97438 * 10 9 7 12 12 C 1.49454 * 120.00164 * 180.02562 * 10 9 7 13 13 O 1.21343 * 119.99752 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99586 * 180.02562 * 12 10 9 15 15 C 1.46499 * 119.99486 * 179.97438 * 14 12 10 16 16 C 1.53004 * 109.47198 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47208 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 300.00001 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00094 * 21 19 17 25 25 H 1.09002 * 109.47075 * 183.64155 * 1 2 3 26 26 H 1.08994 * 109.47283 * 303.64520 * 1 2 3 27 27 H 1.09007 * 109.47501 * 63.64758 * 1 2 3 28 28 H 1.08999 * 110.61649 * 36.72135 * 4 2 1 29 29 H 1.09005 * 110.75159 * 273.78762 * 4 2 1 30 30 H 1.08997 * 109.87667 * 267.08551 * 6 5 4 31 31 H 1.09006 * 109.99960 * 146.00721 * 6 5 4 32 32 H 0.97000 * 120.00386 * 93.54713 * 9 7 6 33 33 H 0.96991 * 120.00732 * 359.97438 * 14 12 10 34 34 H 1.09000 * 109.47602 * 59.99571 * 15 14 12 35 35 H 1.08998 * 109.47492 * 299.99559 * 15 14 12 36 36 H 1.08994 * 109.47074 * 60.00190 * 16 15 14 37 37 H 1.08998 * 109.47285 * 300.00026 * 16 15 14 38 38 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0831 -0.8022 1.2053 5 8 3.3941 -1.2143 0.7626 6 6 3.2718 -1.5881 -0.6201 7 6 2.0825 -0.8012 -1.2039 8 1 2.4205 -0.1268 -1.9907 9 7 1.0640 -1.7192 -1.7197 10 6 1.1550 -2.1874 -2.9803 11 8 2.0805 -1.8481 -3.6881 12 6 0.1156 -3.1234 -3.5067 13 8 -0.8100 -3.4623 -2.7990 14 7 0.2071 -3.5919 -4.7671 15 6 -0.8115 -4.5099 -5.2829 16 6 -0.4745 -4.8862 -6.7272 17 6 -1.5219 -5.8310 -7.2576 18 1 -2.3458 -6.1326 -6.6277 19 6 -1.4284 -6.3104 -8.5469 20 7 -0.4250 -5.9436 -9.3137 21 14 -2.7271 -7.4810 -9.2046 22 1 -2.4000 -7.8463 -10.6063 23 1 -2.7580 -8.7071 -8.3673 24 1 -4.0561 -6.8197 -9.1633 25 1 -0.3633 -1.0256 0.0653 26 1 -0.3633 0.5693 0.8555 27 1 -0.3634 0.4562 -0.9209 28 1 1.4562 -1.6704 1.4087 29 1 2.1580 -0.1688 2.0892 30 1 3.0826 -2.6586 -0.6992 31 1 4.1850 -1.3325 -1.1576 32 1 0.3240 -1.9901 -1.1541 33 1 0.9471 -3.3213 -5.3327 34 1 -1.7870 -4.0246 -5.2524 35 1 -0.8341 -5.4099 -4.6685 36 1 0.5010 -5.3714 -6.7580 37 1 -0.4522 -3.9860 -7.3414 38 1 0.2492 -5.3354 -8.9723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341948343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:39 Heat of formation + Delta-G solvation = -151.509988 kcal Electronic energy + Delta-G solvation = -20473.037876 eV Core-core repulsion = 17121.193746 eV Total energy + Delta-G solvation = -3351.844130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.06144 -40.75111 -39.42560 -37.13848 -36.17635 -35.07372 -33.46878 -31.53716 -30.29954 -27.31822 -27.13609 -25.40411 -23.69769 -23.14820 -21.80687 -21.18753 -19.94268 -18.84513 -18.20456 -17.33438 -17.27222 -17.11009 -16.53076 -16.39988 -16.00217 -15.67896 -15.60912 -15.28166 -14.68358 -14.49847 -14.28032 -13.88141 -13.72685 -13.33897 -13.18057 -12.91460 -12.90438 -12.32576 -12.29143 -12.14686 -12.07905 -11.88502 -11.76031 -11.04377 -10.80563 -10.69472 -10.60339 -10.50013 -10.32922 -8.72667 -6.44698 0.19596 1.16799 1.55483 1.62922 1.82500 1.99327 2.46296 2.59708 2.89698 3.13110 3.23805 3.33307 3.67678 3.73382 4.04614 4.15117 4.18900 4.27469 4.37259 4.51035 4.61972 4.63455 4.66846 4.80452 4.90617 4.93009 4.99539 5.10796 5.21041 5.24993 5.27521 5.73869 5.78250 5.89000 6.12653 6.21834 6.50262 6.59963 6.80099 7.36490 8.69395 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047619 B = 0.003015 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.861607 B = 9284.756455 C = 9550.111895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 H 0.118 0.882 4 C 0.042 3.958 5 O -0.391 6.391 6 C 0.037 3.963 7 C 0.108 3.892 8 H 0.107 0.893 9 N -0.680 5.680 10 C 0.517 3.483 11 O -0.536 6.536 12 C 0.500 3.500 13 O -0.546 6.546 14 N -0.689 5.689 15 C 0.145 3.855 16 C 0.003 3.997 17 C -0.622 4.622 18 H 0.057 0.943 19 C -0.034 4.034 20 N -0.934 5.934 21 Si 1.119 2.881 22 H -0.284 1.284 23 H -0.268 1.268 24 H -0.268 1.268 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.420 0.580 33 H 0.415 0.585 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 13.045 21.108 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 H 0.136 0.864 4 C -0.034 4.034 5 O -0.310 6.310 6 C -0.041 4.041 7 C 0.004 3.996 8 H 0.125 0.875 9 N -0.336 5.336 10 C 0.297 3.703 11 O -0.413 6.413 12 C 0.281 3.719 13 O -0.424 6.424 14 N -0.341 5.341 15 C 0.022 3.978 16 C -0.035 4.035 17 C -0.660 4.660 18 H 0.075 0.925 19 C -0.232 4.232 20 N -0.571 5.571 21 Si 0.939 3.061 22 H -0.210 1.210 23 H -0.194 1.194 24 H -0.193 1.193 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.261 0.739 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.204 12.172 19.922 23.565 hybrid contribution 0.571 0.761 0.852 1.277 sum 3.775 12.933 20.774 24.760 Atomic orbital electron populations 1.21728 0.92485 1.02517 1.03704 1.23024 0.97898 1.00831 0.92207 0.86374 1.23936 0.83275 0.98329 0.97860 1.88900 1.30622 1.86551 1.24913 1.23620 0.99204 0.98594 0.82660 1.22600 0.87765 0.91067 0.98214 0.87475 1.45941 1.28980 1.46220 1.12479 1.19971 0.85406 0.81530 0.83368 1.90767 1.34064 1.58352 1.58073 1.20326 0.86363 0.82339 0.82867 1.90724 1.34608 1.59489 1.57623 1.46046 1.28767 1.45960 1.13290 1.21320 0.90006 0.91465 0.95014 1.19342 0.96765 0.95926 0.91451 1.22294 1.11497 1.30803 1.01429 0.92502 1.27417 1.01446 0.99986 0.94332 1.70924 1.12834 1.33876 1.39470 0.82909 0.72956 0.74455 0.75731 1.20953 1.19356 1.19321 0.92393 0.89433 0.92112 0.91527 0.86310 0.92742 0.88401 0.73916 0.74898 0.91918 0.92007 0.97734 0.97670 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.46 71.98 0.61 -0.78 16 2 C -0.12 -1.29 3.70 -9.49 -0.04 -1.33 16 3 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 4 C 0.04 0.49 7.17 72.66 0.52 1.01 16 5 O -0.39 -7.26 11.52 -148.98 -1.72 -8.98 16 6 C 0.04 0.69 7.50 72.35 0.54 1.23 16 7 C 0.11 1.80 3.24 45.98 0.15 1.95 16 8 H 0.11 1.90 7.66 -2.39 -0.02 1.88 16 9 N -0.68 -13.80 4.51 -439.18 -1.98 -15.78 16 10 C 0.52 14.23 7.88 87.27 0.69 14.91 16 11 O -0.54 -16.74 16.19 -3.26 -0.05 -16.79 16 12 C 0.50 16.33 7.89 87.27 0.69 17.02 16 13 O -0.55 -19.48 16.48 -3.23 -0.05 -19.53 16 14 N -0.69 -24.40 5.55 -464.41 -2.58 -26.98 16 15 C 0.14 6.01 5.61 86.38 0.48 6.49 16 16 C 0.00 0.13 4.40 29.85 0.13 0.26 16 17 C -0.62 -34.55 9.11 25.60 0.23 -34.31 16 18 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 19 C -0.03 -1.91 5.46 84.65 0.46 -1.44 16 20 N -0.93 -56.65 13.65 21.45 0.29 -56.36 16 21 Si 1.12 49.10 29.90 68.60 2.05 51.15 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H 0.06 0.60 6.26 -2.39 -0.01 0.58 16 26 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.07 0.75 8.01 -2.39 -0.02 0.73 16 29 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.05 1.12 7.93 -2.39 -0.02 1.11 16 31 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.42 7.66 5.76 -92.71 -0.53 7.13 16 33 H 0.41 14.00 7.94 -92.72 -0.74 13.27 16 34 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.00 0.23 8.01 -2.39 -0.02 0.21 16 37 H 0.01 0.26 8.01 -2.39 -0.02 0.24 16 38 H 0.26 15.69 7.22 -92.70 -0.67 15.02 16 Total: -1.00 -67.70 321.09 0.35 -67.35 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.09 Total: 20.90 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 4.47 Total: 5.02 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -4.26 Total: -99.12 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.82 Total: -45.30 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.05 Total: 51.15 kcal Total: -67.70 0.35 -67.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341948343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.161 kcal (2) G-P(sol) polarization free energy of solvation -67.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds