Wall clock time and date at job start Mon Mar 30 2020 02:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 110.83103 * 2 1 4 4 C 1.54996 * 110.90377 * 123.64825 * 2 1 3 5 5 O 1.44382 * 103.48907 * 155.22179 * 4 2 1 6 6 C 1.43745 * 106.97814 * 319.93940 * 5 4 2 7 7 C 1.54098 * 107.29219 * 26.50817 * 6 5 4 8 8 H 1.08994 * 110.49458 * 239.16528 * 7 6 5 9 9 N 1.46499 * 110.48433 * 116.64940 * 7 6 5 10 10 C 1.34777 * 120.00065 * 86.45921 * 9 7 6 11 11 O 1.21343 * 120.00084 * 359.97438 * 10 9 7 12 12 C 1.49454 * 120.00164 * 180.02562 * 10 9 7 13 13 O 1.21353 * 119.99759 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00135 * 180.27489 * 12 10 9 15 15 C 1.46500 * 120.00432 * 179.72278 * 14 12 10 16 16 C 1.52991 * 109.47288 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.46959 * 180.02562 * 16 15 14 18 18 H 1.07992 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99951 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47031 * 60.00139 * 21 19 17 23 23 H 1.48504 * 109.46971 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47038 * 300.00115 * 21 19 17 25 25 H 1.08997 * 109.47456 * 183.64274 * 1 2 3 26 26 H 1.08991 * 109.47378 * 303.64946 * 1 2 3 27 27 H 1.09005 * 109.47435 * 63.64989 * 1 2 3 28 28 H 1.08997 * 110.62241 * 36.72107 * 4 2 1 29 29 H 1.08998 * 110.75358 * 273.78763 * 4 2 1 30 30 H 1.09004 * 109.87817 * 267.09298 * 6 5 4 31 31 H 1.09000 * 110.00822 * 146.00820 * 6 5 4 32 32 H 0.97000 * 120.00380 * 266.45117 * 9 7 6 33 33 H 0.97001 * 120.00114 * 359.71542 * 14 12 10 34 34 H 1.09000 * 109.46865 * 300.00301 * 15 14 12 35 35 H 1.09001 * 109.46879 * 59.99699 * 15 14 12 36 36 H 1.09003 * 109.47249 * 299.99458 * 16 15 14 37 37 H 1.08993 * 109.47327 * 59.99886 * 16 15 14 38 38 H 0.97000 * 120.00287 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0830 -0.8023 1.2053 5 8 3.3940 -1.2144 0.7626 6 6 3.2718 -1.5883 -0.6200 7 6 2.0824 -0.8014 -1.2039 8 1 1.3256 -1.4843 -1.5897 9 7 2.5374 0.1071 -2.2592 10 6 2.6492 -0.3353 -3.5274 11 8 2.3734 -1.4863 -3.7950 12 6 3.1138 0.5914 -4.6039 13 8 3.3900 1.7424 -4.3362 14 7 3.2203 0.1506 -5.8730 15 6 3.6699 1.0606 -6.9294 16 6 3.7031 0.3149 -8.2649 17 6 4.1662 1.2510 -9.3515 18 1 4.4119 2.2752 -9.1133 19 6 4.2763 0.7995 -10.6496 20 7 3.9766 -0.4477 -10.9397 21 14 4.8497 1.9599 -11.9965 22 1 6.2105 2.4590 -11.6737 23 1 4.8819 1.2362 -13.2928 24 1 3.9119 3.1072 -12.0939 25 1 -0.3634 -1.0255 0.0653 26 1 -0.3633 0.5694 0.8554 27 1 -0.3634 0.4561 -0.9209 28 1 1.4561 -1.6704 1.4088 29 1 2.1579 -0.1689 2.0892 30 1 3.0825 -2.6588 -0.6991 31 1 4.1850 -1.3328 -1.1575 32 1 2.7580 1.0272 -2.0454 33 1 2.9993 -0.7694 -6.0871 34 1 2.9821 1.9031 -7.0002 35 1 4.6692 1.4262 -6.6929 36 1 4.3913 -0.5274 -8.1938 37 1 2.7041 -0.0511 -8.5016 38 1 4.0536 -0.7652 -11.8530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341948344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:43 Heat of formation + Delta-G solvation = -129.207626 kcal Electronic energy + Delta-G solvation = -20263.137965 eV Core-core repulsion = 16912.260938 eV Total energy + Delta-G solvation = -3350.877027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84451 -39.67995 -38.15899 -35.50409 -34.78167 -33.16766 -32.81703 -29.88338 -29.23789 -26.71190 -25.71136 -24.03593 -22.45978 -21.20487 -21.02580 -20.08963 -18.31088 -17.36781 -16.67748 -16.34755 -16.15955 -15.69498 -15.59254 -15.00132 -14.66349 -14.41494 -14.25462 -13.66582 -13.63526 -13.42291 -13.00363 -12.70306 -12.34732 -12.30869 -11.84913 -11.59350 -11.37496 -11.29007 -11.24732 -11.06166 -10.69959 -10.41168 -10.17541 -9.83002 -9.48746 -9.39488 -9.23822 -8.72987 -8.43284 -6.11493 -4.15420 1.52976 2.41467 3.29675 3.33884 3.33941 3.36542 3.51535 3.79066 3.95691 4.33169 4.38708 4.46752 4.61183 4.72037 4.86355 4.94074 5.14612 5.25319 5.26878 5.32890 5.36057 5.52534 5.56782 5.72341 6.07247 6.15258 6.21183 6.42272 6.55936 6.66254 6.96589 7.43420 7.55730 7.60493 7.85246 7.86048 8.18094 8.30332 8.89975 9.49559 10.99969 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049826 B = 0.002874 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.822278 B = 9740.181735 C = 9838.647481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.051 3.949 5 O -0.375 6.375 6 C 0.035 3.965 7 C 0.114 3.886 8 H 0.108 0.892 9 N -0.698 5.698 10 C 0.509 3.491 11 O -0.518 6.518 12 C 0.497 3.503 13 O -0.532 6.532 14 N -0.685 5.685 15 C 0.118 3.882 16 C 0.011 3.989 17 C -0.525 4.525 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.414 0.586 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -1.122 22.994 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 H 0.114 0.886 4 C -0.025 4.025 5 O -0.293 6.293 6 C -0.043 4.043 7 C 0.009 3.991 8 H 0.126 0.874 9 N -0.352 5.352 10 C 0.290 3.710 11 O -0.392 6.392 12 C 0.276 3.724 13 O -0.410 6.410 14 N -0.336 5.336 15 C -0.003 4.003 16 C -0.026 4.026 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.252 0.748 33 H 0.246 0.754 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.092 -1.273 22.916 23.746 hybrid contribution 0.122 0.524 -0.989 1.126 sum -5.969 -0.748 21.927 22.737 Atomic orbital electron populations 1.21734 0.92875 1.02640 1.02825 1.23023 0.97512 1.00714 0.94004 0.88638 1.23634 0.84382 0.97717 0.96816 1.88918 1.28882 1.86426 1.25080 1.23670 0.99208 0.99001 0.82384 1.22548 0.96781 0.92257 0.87549 0.87363 1.45805 1.67065 1.15728 1.06632 1.20546 0.78386 0.88096 0.83932 1.90761 1.47767 1.18311 1.82388 1.19922 0.80458 0.87675 0.84303 1.90738 1.49769 1.18167 1.82368 1.46239 1.63847 1.16671 1.06812 1.21949 0.98937 0.92537 0.86894 1.19350 0.98239 0.96210 0.88810 1.20976 1.45767 0.97210 0.92392 0.92204 1.25001 0.95185 0.95239 0.98814 1.69947 1.48157 1.15049 1.19935 0.86550 0.79383 0.80735 0.80730 1.20082 1.21214 1.20097 0.91958 0.91696 0.91726 0.91594 0.88446 0.91074 0.89087 0.74847 0.75364 0.91825 0.91816 0.95653 0.95666 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.13 -0.90 3.44 -88.61 -0.30 -1.20 16 3 H 0.10 0.62 7.75 -51.93 -0.40 0.22 16 4 C 0.05 0.35 7.17 38.21 0.27 0.62 16 5 O -0.37 -3.80 11.52 -35.23 -0.41 -4.20 16 6 C 0.04 0.35 7.50 37.73 0.28 0.63 16 7 C 0.11 1.05 2.93 -66.40 -0.19 0.85 16 8 H 0.11 1.05 7.39 -51.93 -0.38 0.66 16 9 N -0.70 -7.70 5.04 -52.76 -0.27 -7.97 16 10 C 0.51 7.31 7.88 -11.58 -0.09 7.22 16 11 O -0.52 -8.32 16.19 5.50 0.09 -8.23 16 12 C 0.50 8.35 7.89 -11.59 -0.09 8.26 16 13 O -0.53 -9.88 16.48 5.49 0.09 -9.79 16 14 N -0.68 -12.26 5.55 -60.73 -0.34 -12.60 16 15 C 0.12 2.45 5.61 -4.05 -0.02 2.42 16 16 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 17 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.37 8.01 -51.93 -0.42 -0.04 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.98 7.93 -51.93 -0.41 0.57 16 32 H 0.41 4.19 7.82 -40.82 -0.32 3.87 16 33 H 0.41 7.00 7.94 -40.82 -0.32 6.67 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -31.31 326.30 -6.16 -37.47 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.60 Total: 4.15 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.36 Total: 5.38 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.13 Total: -45.86 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.23 Total: -22.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.31 -6.16 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341948344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.741 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds