Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 110.83103 * 2 1 4 4 C 1.54996 * 110.90377 * 123.64825 * 2 1 3 5 5 O 1.44382 * 103.48907 * 155.22179 * 4 2 1 6 6 C 1.43745 * 106.97814 * 319.93940 * 5 4 2 7 7 C 1.54098 * 107.29219 * 26.50817 * 6 5 4 8 8 H 1.08994 * 110.49458 * 239.16528 * 7 6 5 9 9 N 1.46499 * 110.48433 * 116.64940 * 7 6 5 10 10 C 1.34777 * 120.00065 * 86.45921 * 9 7 6 11 11 O 1.21343 * 120.00084 * 359.97438 * 10 9 7 12 12 C 1.49454 * 120.00164 * 180.02562 * 10 9 7 13 13 O 1.21353 * 119.99759 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00135 * 180.27489 * 12 10 9 15 15 C 1.46500 * 120.00432 * 179.72278 * 14 12 10 16 16 C 1.52991 * 109.47288 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.46959 * 180.02562 * 16 15 14 18 18 H 1.07992 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99951 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47031 * 60.00139 * 21 19 17 23 23 H 1.48504 * 109.46971 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47038 * 300.00115 * 21 19 17 25 25 H 1.08997 * 109.47456 * 183.64274 * 1 2 3 26 26 H 1.08991 * 109.47378 * 303.64946 * 1 2 3 27 27 H 1.09005 * 109.47435 * 63.64989 * 1 2 3 28 28 H 1.08997 * 110.62241 * 36.72107 * 4 2 1 29 29 H 1.08998 * 110.75358 * 273.78763 * 4 2 1 30 30 H 1.09004 * 109.87817 * 267.09298 * 6 5 4 31 31 H 1.09000 * 110.00822 * 146.00820 * 6 5 4 32 32 H 0.97000 * 120.00380 * 266.45117 * 9 7 6 33 33 H 0.97001 * 120.00114 * 359.71542 * 14 12 10 34 34 H 1.09000 * 109.46865 * 300.00301 * 15 14 12 35 35 H 1.09001 * 109.46879 * 59.99699 * 15 14 12 36 36 H 1.09003 * 109.47249 * 299.99458 * 16 15 14 37 37 H 1.08993 * 109.47327 * 59.99886 * 16 15 14 38 38 H 0.97000 * 120.00287 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0830 -0.8023 1.2053 5 8 3.3940 -1.2144 0.7626 6 6 3.2718 -1.5883 -0.6200 7 6 2.0824 -0.8014 -1.2039 8 1 1.3256 -1.4843 -1.5897 9 7 2.5374 0.1071 -2.2592 10 6 2.6492 -0.3353 -3.5274 11 8 2.3734 -1.4863 -3.7950 12 6 3.1138 0.5914 -4.6039 13 8 3.3900 1.7424 -4.3362 14 7 3.2203 0.1506 -5.8730 15 6 3.6699 1.0606 -6.9294 16 6 3.7031 0.3149 -8.2649 17 6 4.1662 1.2510 -9.3515 18 1 4.4119 2.2752 -9.1133 19 6 4.2763 0.7995 -10.6496 20 7 3.9766 -0.4477 -10.9397 21 14 4.8497 1.9599 -11.9965 22 1 6.2105 2.4590 -11.6737 23 1 4.8819 1.2362 -13.2928 24 1 3.9119 3.1072 -12.0939 25 1 -0.3634 -1.0255 0.0653 26 1 -0.3633 0.5694 0.8554 27 1 -0.3634 0.4561 -0.9209 28 1 1.4561 -1.6704 1.4088 29 1 2.1579 -0.1689 2.0892 30 1 3.0825 -2.6588 -0.6991 31 1 4.1850 -1.3328 -1.1575 32 1 2.7580 1.0272 -2.0454 33 1 2.9993 -0.7694 -6.0871 34 1 2.9821 1.9031 -7.0002 35 1 4.6692 1.4262 -6.6929 36 1 4.3913 -0.5274 -8.1938 37 1 2.7041 -0.0511 -8.5016 38 1 4.0536 -0.7652 -11.8530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341948344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -153.288213 kcal Electronic energy + Delta-G solvation = -20264.182177 eV Core-core repulsion = 16912.260938 eV Total energy + Delta-G solvation = -3351.921239 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.93380 -40.65918 -39.38978 -36.94031 -35.93956 -34.83640 -33.79537 -31.71356 -30.10313 -27.50074 -27.11950 -25.46207 -23.49537 -22.70485 -21.95244 -21.29173 -19.53595 -18.60065 -18.22186 -17.50780 -17.20486 -16.81213 -16.52772 -16.50246 -16.24722 -15.66448 -15.51435 -14.87285 -14.58363 -14.31200 -14.23238 -14.08972 -13.40287 -13.27379 -12.95858 -12.93449 -12.89068 -12.55336 -12.45128 -12.27893 -11.96515 -11.84845 -11.69353 -11.46393 -10.90449 -10.74120 -10.61583 -10.31862 -10.21197 -8.23910 -6.35318 0.26156 1.23416 1.43342 1.45369 1.53512 2.05957 2.38874 2.59718 2.90621 3.11080 3.27144 3.40426 3.70680 3.84522 3.98162 4.22182 4.37588 4.41451 4.44126 4.56098 4.68007 4.69852 4.80240 4.82083 4.92977 5.01946 5.05657 5.19968 5.31476 5.41363 5.54133 5.72378 5.76328 5.89815 6.12183 6.31042 6.64911 6.78350 6.88458 7.34343 8.87960 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049826 B = 0.002874 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.822278 B = 9740.181735 C = 9838.647481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 H 0.101 0.899 4 C 0.048 3.952 5 O -0.394 6.394 6 C 0.037 3.963 7 C 0.110 3.890 8 H 0.107 0.893 9 N -0.679 5.679 10 C 0.517 3.483 11 O -0.536 6.536 12 C 0.500 3.500 13 O -0.548 6.548 14 N -0.688 5.688 15 C 0.138 3.862 16 C 0.019 3.981 17 C -0.547 4.547 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.267 1.267 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.421 0.579 33 H 0.415 0.585 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.007 0.993 37 H 0.008 0.992 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 -0.189 24.250 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 H 0.119 0.881 4 C -0.028 4.028 5 O -0.313 6.313 6 C -0.041 4.041 7 C 0.006 3.994 8 H 0.125 0.875 9 N -0.333 5.333 10 C 0.298 3.702 11 O -0.413 6.413 12 C 0.280 3.720 13 O -0.427 6.427 14 N -0.339 5.339 15 C 0.015 3.985 16 C -0.018 4.018 17 C -0.585 4.585 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.192 1.192 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.259 0.741 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.505 -0.325 24.227 25.087 hybrid contribution 0.231 0.222 -1.274 1.313 sum -6.274 -0.103 22.953 23.796 Atomic orbital electron populations 1.21732 0.91729 1.03249 1.03110 1.23020 0.98313 1.00537 0.92498 0.88096 1.23868 0.83153 0.98564 0.97207 1.88899 1.30901 1.86638 1.24894 1.23594 0.98671 0.99306 0.82572 1.22746 0.96630 0.92385 0.87657 0.87544 1.45778 1.65476 1.16294 1.05792 1.19997 0.78672 0.87239 0.84328 1.90763 1.49080 1.18745 1.82711 1.20301 0.79567 0.87798 0.84288 1.90726 1.50299 1.19020 1.82635 1.46069 1.64330 1.16516 1.06951 1.21487 0.98928 0.92198 0.85896 1.19168 0.96501 0.95611 0.90569 1.21433 1.45707 0.97902 0.93453 0.91672 1.25918 0.95201 0.96841 1.01394 1.70068 1.49244 1.16895 1.20587 0.85461 0.79220 0.78647 0.77503 1.19191 1.20856 1.19151 0.91441 0.90012 0.92637 0.90279 0.86593 0.90688 0.90468 0.74101 0.74883 0.91926 0.92025 0.97440 0.97377 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.19 71.98 0.66 -0.56 16 2 C -0.12 -1.40 3.44 -9.49 -0.03 -1.43 16 3 H 0.10 1.05 7.75 -2.39 -0.02 1.04 16 4 C 0.05 0.53 7.17 72.66 0.52 1.06 16 5 O -0.39 -7.40 11.52 -148.98 -1.72 -9.12 16 6 C 0.04 0.69 7.50 72.35 0.54 1.23 16 7 C 0.11 1.88 2.93 45.98 0.13 2.01 16 8 H 0.11 1.92 7.39 -2.39 -0.02 1.90 16 9 N -0.68 -14.22 5.04 -439.18 -2.21 -16.43 16 10 C 0.52 14.50 7.88 87.27 0.69 15.19 16 11 O -0.54 -17.00 16.19 -3.23 -0.05 -17.05 16 12 C 0.50 16.57 7.89 87.27 0.69 17.26 16 13 O -0.55 -19.91 16.48 -3.26 -0.05 -19.96 16 14 N -0.69 -24.69 5.55 -464.42 -2.58 -27.26 16 15 C 0.14 5.72 5.61 86.38 0.48 6.20 16 16 C 0.02 0.96 5.09 29.85 0.15 1.11 16 17 C -0.55 -30.07 9.11 25.60 0.23 -29.84 16 18 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.01 0.29 5.46 84.66 0.46 0.75 16 20 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 21 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 26 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.60 8.14 -2.38 -0.02 0.59 16 28 H 0.08 0.68 8.01 -2.39 -0.02 0.66 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.64 7.93 -2.39 -0.02 1.62 16 32 H 0.42 7.89 7.82 -92.71 -0.73 7.16 16 33 H 0.41 14.32 7.94 -92.71 -0.74 13.58 16 34 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -66.19 326.30 -0.15 -66.34 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.38 Total: 19.79 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 4.54 Total: 12.97 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -4.51 Total: -98.19 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -1.82 Total: -46.13 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -66.19 -0.15 -66.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341948344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.952 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds