Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.56389 * 2 1 4 4 C 1.54484 * 110.51298 * 237.32480 * 2 1 3 5 5 O 1.44424 * 104.80383 * 265.33474 * 4 2 1 6 6 C 1.44424 * 105.27191 * 319.48635 * 5 4 2 7 7 C 1.54479 * 104.80638 * 40.51514 * 6 5 4 8 8 H 1.08992 * 110.63346 * 94.72231 * 7 6 5 9 9 N 1.46503 * 110.51121 * 217.38001 * 7 6 5 10 10 C 1.34779 * 119.99606 * 269.63953 * 9 7 6 11 11 O 1.21353 * 119.99787 * 359.97438 * 10 9 7 12 12 C 1.49450 * 119.99981 * 180.02562 * 10 9 7 13 13 O 1.21345 * 119.99730 * 359.97438 * 12 10 9 14 14 N 1.34779 * 119.99981 * 180.02562 * 12 10 9 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99711 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46794 * 90.00022 * 21 19 17 23 23 H 1.48502 * 109.47140 * 210.00005 * 21 19 17 24 24 H 1.48501 * 109.46982 * 330.00118 * 21 19 17 25 25 H 1.08998 * 109.47216 * 297.31826 * 1 2 3 26 26 H 1.09000 * 109.47167 * 57.31777 * 1 2 3 27 27 H 1.08998 * 109.46914 * 177.31880 * 1 2 3 28 28 H 1.09004 * 110.36951 * 24.16533 * 4 2 1 29 29 H 1.08999 * 110.37225 * 146.38884 * 4 2 1 30 30 H 1.09004 * 110.37535 * 281.68120 * 6 5 4 31 31 H 1.09000 * 110.37150 * 159.34602 * 6 5 4 32 32 H 0.96991 * 120.00647 * 89.63839 * 9 7 6 33 33 H 0.97000 * 119.99708 * 359.97438 * 14 12 10 34 34 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 35 35 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 36 36 H 1.09001 * 109.47194 * 299.99493 * 16 15 14 37 37 H 1.08992 * 109.47399 * 59.99666 * 16 15 14 38 38 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0714 -0.7811 -1.2179 5 8 2.3071 -2.1177 -0.7240 6 6 2.8758 -1.9422 0.5919 7 6 2.0714 -0.7814 1.2180 8 1 1.2491 -1.1656 1.8215 9 7 2.9458 0.0711 2.0274 10 6 3.1188 -0.1925 3.3377 11 8 2.5500 -1.1356 3.8472 12 6 4.0103 0.6775 4.1636 13 8 4.5787 1.6208 3.6542 14 7 4.1838 0.4136 5.4739 15 6 5.0572 1.2667 6.2835 16 6 5.0796 0.7522 7.7242 17 6 5.9776 1.6302 8.5572 18 1 6.4822 2.4707 8.1042 19 6 6.1549 1.3603 9.8976 20 7 6.9390 2.1261 10.6244 21 14 5.2815 -0.0932 10.6813 22 1 6.1403 -1.3004 10.5792 23 1 5.0124 0.2034 12.1113 24 1 3.9976 -0.3379 9.9764 25 1 -0.3633 0.4716 0.9130 26 1 -0.3633 0.5549 -0.8650 27 1 -0.3633 -1.0265 -0.0481 28 1 1.3311 -0.7972 -2.0179 29 1 3.0014 -0.3359 -1.5714 30 1 3.9302 -1.6762 0.5172 31 1 2.7536 -2.8503 1.1823 32 1 3.4002 0.8251 1.6203 33 1 3.7297 -0.3408 5.8809 34 1 4.6815 2.2898 6.2684 35 1 6.0673 1.2445 5.8744 36 1 4.0696 0.7740 8.1335 37 1 5.4556 -0.2707 7.7389 38 1 7.0635 1.9365 11.5675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341948345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = -124.919270 kcal Electronic energy + Delta-G solvation = -20309.188010 eV Core-core repulsion = 16958.496940 eV Total energy + Delta-G solvation = -3350.691070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91967 -39.77859 -38.26076 -35.61175 -34.85176 -33.10783 -32.79342 -30.33900 -29.31226 -26.85391 -25.92837 -24.00378 -22.48211 -21.17723 -20.92603 -20.22621 -18.36881 -17.38896 -16.93456 -16.51101 -16.14385 -15.98961 -15.43060 -15.18073 -14.84009 -14.34107 -14.19820 -13.94817 -13.69775 -13.18386 -12.92749 -12.88079 -12.64081 -12.51590 -11.88213 -11.66759 -11.54172 -11.35499 -11.31764 -11.27670 -10.47457 -10.34351 -10.24735 -9.98435 -9.54897 -9.47678 -9.35040 -8.82823 -8.63850 -6.14643 -4.15593 1.43611 2.31210 3.24806 3.25171 3.33031 3.34574 3.50352 3.77701 3.92788 4.30590 4.35671 4.39939 4.53882 4.63554 4.80231 4.94721 5.18104 5.18473 5.24509 5.34678 5.39993 5.46149 5.51249 5.73619 5.90386 5.92554 6.06354 6.35653 6.42531 6.45980 6.84079 7.04047 7.15179 7.47371 7.59669 7.75826 8.13832 8.39169 8.88487 9.45231 10.98119 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.043217 B = 0.003076 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.735109 B = 9099.784558 C = 9317.808597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 H 0.094 0.906 4 C 0.047 3.953 5 O -0.369 6.369 6 C 0.034 3.966 7 C 0.113 3.887 8 H 0.111 0.889 9 N -0.698 5.698 10 C 0.510 3.490 11 O -0.518 6.518 12 C 0.499 3.501 13 O -0.528 6.528 14 N -0.689 5.689 15 C 0.127 3.873 16 C -0.024 4.024 17 C -0.525 4.525 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.414 0.586 33 H 0.409 0.591 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.020 0.980 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.003 -5.936 -22.477 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 H 0.112 0.888 4 C -0.030 4.030 5 O -0.287 6.287 6 C -0.044 4.044 7 C 0.008 3.992 8 H 0.129 0.871 9 N -0.353 5.353 10 C 0.291 3.709 11 O -0.392 6.392 12 C 0.278 3.722 13 O -0.406 6.406 14 N -0.341 5.341 15 C 0.005 3.995 16 C -0.061 4.061 17 C -0.563 4.563 18 H 0.095 0.905 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.708 3.292 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.190 1.190 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.251 0.749 33 H 0.245 0.755 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.965 -6.111 -22.364 26.089 hybrid contribution -0.259 -0.466 0.705 0.884 sum -12.224 -6.577 -21.659 25.726 Atomic orbital electron populations 1.21804 0.92896 1.02756 1.02510 1.22817 0.97985 1.00483 0.94167 0.88773 1.23524 1.00425 0.82909 0.96137 1.89175 1.83113 1.25714 1.30656 1.23901 0.97288 0.99339 0.83920 1.22569 0.93593 0.90741 0.92309 0.87148 1.45783 1.48091 1.32677 1.08739 1.20518 0.82239 0.85133 0.82974 1.90762 1.47274 1.29327 1.71868 1.19904 0.83058 0.85423 0.83810 1.90751 1.48342 1.29612 1.71866 1.46219 1.47170 1.32515 1.08150 1.21732 0.92714 0.93468 0.91550 1.19826 0.98215 0.97395 0.90705 1.20873 1.27760 1.13882 0.93813 0.90532 1.24988 0.94713 0.96370 0.97104 1.69898 1.37434 1.38634 1.07556 0.86764 0.80748 0.83017 0.78665 1.20135 1.21212 1.18954 0.91964 0.91835 0.91736 0.88525 0.91819 0.91449 0.88037 0.74881 0.75531 0.91191 0.91207 0.95708 0.96131 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.94 37.16 0.33 -0.50 16 2 C -0.14 -0.88 3.48 -89.05 -0.31 -1.19 16 3 H 0.09 0.52 7.70 -51.93 -0.40 0.12 16 4 C 0.05 0.31 7.18 37.94 0.27 0.58 16 5 O -0.37 -3.52 11.65 -35.23 -0.41 -3.93 16 6 C 0.03 0.31 7.35 37.93 0.28 0.58 16 7 C 0.11 1.00 3.13 -66.36 -0.21 0.79 16 8 H 0.11 1.10 7.14 -51.93 -0.37 0.73 16 9 N -0.70 -7.10 5.08 -52.72 -0.27 -7.37 16 10 C 0.51 6.87 7.89 -11.58 -0.09 6.78 16 11 O -0.52 -7.88 16.12 5.49 0.09 -7.79 16 12 C 0.50 7.88 7.89 -11.58 -0.09 7.79 16 13 O -0.53 -9.33 16.48 5.50 0.09 -9.24 16 14 N -0.69 -11.48 5.55 -60.73 -0.34 -11.81 16 15 C 0.13 2.48 5.61 -4.04 -0.02 2.46 16 16 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 17 C -0.52 -14.43 9.66 -34.44 -0.33 -14.77 16 18 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 20 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 21 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.50 7.87 -51.93 -0.41 0.09 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.41 3.72 7.85 -40.82 -0.32 3.40 16 33 H 0.41 6.31 7.94 -40.82 -0.32 5.98 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 37 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -31.76 322.45 -5.81 -37.57 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.55 Total: 3.88 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.39 Total: 3.78 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.17 Total: -45.43 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.23 Total: -20.96 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.76 -5.81 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341948345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.344 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds