Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.56389 * 2 1 4 4 C 1.54484 * 110.51298 * 237.32480 * 2 1 3 5 5 O 1.44424 * 104.80383 * 265.33474 * 4 2 1 6 6 C 1.44424 * 105.27191 * 319.48635 * 5 4 2 7 7 C 1.54479 * 104.80638 * 40.51514 * 6 5 4 8 8 H 1.08992 * 110.63346 * 94.72231 * 7 6 5 9 9 N 1.46503 * 110.51121 * 217.38001 * 7 6 5 10 10 C 1.34779 * 119.99606 * 269.63953 * 9 7 6 11 11 O 1.21353 * 119.99787 * 359.97438 * 10 9 7 12 12 C 1.49450 * 119.99981 * 180.02562 * 10 9 7 13 13 O 1.21345 * 119.99730 * 359.97438 * 12 10 9 14 14 N 1.34779 * 119.99981 * 180.02562 * 12 10 9 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99711 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46794 * 90.00022 * 21 19 17 23 23 H 1.48502 * 109.47140 * 210.00005 * 21 19 17 24 24 H 1.48501 * 109.46982 * 330.00118 * 21 19 17 25 25 H 1.08998 * 109.47216 * 297.31826 * 1 2 3 26 26 H 1.09000 * 109.47167 * 57.31777 * 1 2 3 27 27 H 1.08998 * 109.46914 * 177.31880 * 1 2 3 28 28 H 1.09004 * 110.36951 * 24.16533 * 4 2 1 29 29 H 1.08999 * 110.37225 * 146.38884 * 4 2 1 30 30 H 1.09004 * 110.37535 * 281.68120 * 6 5 4 31 31 H 1.09000 * 110.37150 * 159.34602 * 6 5 4 32 32 H 0.96991 * 120.00647 * 89.63839 * 9 7 6 33 33 H 0.97000 * 119.99708 * 359.97438 * 14 12 10 34 34 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 35 35 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 36 36 H 1.09001 * 109.47194 * 299.99493 * 16 15 14 37 37 H 1.08992 * 109.47399 * 59.99666 * 16 15 14 38 38 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0714 -0.7811 -1.2179 5 8 2.3071 -2.1177 -0.7240 6 6 2.8758 -1.9422 0.5919 7 6 2.0714 -0.7814 1.2180 8 1 1.2491 -1.1656 1.8215 9 7 2.9458 0.0711 2.0274 10 6 3.1188 -0.1925 3.3377 11 8 2.5500 -1.1356 3.8472 12 6 4.0103 0.6775 4.1636 13 8 4.5787 1.6208 3.6542 14 7 4.1838 0.4136 5.4739 15 6 5.0572 1.2667 6.2835 16 6 5.0796 0.7522 7.7242 17 6 5.9776 1.6302 8.5572 18 1 6.4822 2.4707 8.1042 19 6 6.1549 1.3603 9.8976 20 7 6.9390 2.1261 10.6244 21 14 5.2815 -0.0932 10.6813 22 1 6.1403 -1.3004 10.5792 23 1 5.0124 0.2034 12.1113 24 1 3.9976 -0.3379 9.9764 25 1 -0.3633 0.4716 0.9130 26 1 -0.3633 0.5549 -0.8650 27 1 -0.3633 -1.0265 -0.0481 28 1 1.3311 -0.7972 -2.0179 29 1 3.0014 -0.3359 -1.5714 30 1 3.9302 -1.6762 0.5172 31 1 2.7536 -2.8503 1.1823 32 1 3.4002 0.8251 1.6203 33 1 3.7297 -0.3408 5.8809 34 1 4.6815 2.2898 6.2684 35 1 6.0673 1.2445 5.8744 36 1 4.0696 0.7740 8.1335 37 1 5.4556 -0.2707 7.7389 38 1 7.0635 1.9365 11.5675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341948345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -150.293288 kcal Electronic energy + Delta-G solvation = -20310.288310 eV Core-core repulsion = 16958.496940 eV Total energy + Delta-G solvation = -3351.791370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93534 -40.68805 -39.40514 -36.98471 -35.91996 -34.80643 -33.70307 -32.13803 -30.09970 -27.66990 -27.22525 -25.30216 -23.40269 -22.62734 -21.89328 -21.33676 -19.52635 -19.03139 -18.22859 -17.40502 -17.17516 -16.98909 -16.35585 -16.25055 -16.13780 -15.91976 -15.57972 -15.05937 -14.63682 -14.59173 -14.42152 -13.52611 -13.47814 -13.39825 -13.15459 -13.07480 -12.92207 -12.43976 -12.23589 -12.20256 -11.94636 -11.85295 -11.78727 -11.51700 -10.88905 -10.79646 -10.77035 -10.35595 -10.24755 -8.30832 -6.37680 0.26178 1.21503 1.39557 1.41045 1.52155 2.06131 2.35927 2.53395 3.01211 3.04581 3.29315 3.40039 3.70433 3.84395 3.98842 4.16266 4.25538 4.38350 4.45333 4.65008 4.69067 4.71854 4.74749 4.79408 4.91712 4.96901 4.98248 5.12015 5.28380 5.30357 5.36587 5.58022 5.72730 5.85688 6.19611 6.31068 6.64848 6.71434 6.88544 7.27109 8.85493 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.043217 B = 0.003076 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.735109 B = 9099.784558 C = 9317.808597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 H 0.108 0.892 4 C 0.043 3.957 5 O -0.387 6.387 6 C 0.035 3.965 7 C 0.111 3.889 8 H 0.101 0.899 9 N -0.679 5.679 10 C 0.519 3.481 11 O -0.535 6.535 12 C 0.501 3.499 13 O -0.547 6.547 14 N -0.687 5.687 15 C 0.142 3.858 16 C -0.017 4.017 17 C -0.536 4.536 18 H 0.036 0.964 19 C 0.008 3.992 20 N -0.948 5.948 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.286 1.286 24 H -0.241 1.241 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.422 0.578 33 H 0.418 0.582 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.675 -7.221 -23.872 28.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 H 0.126 0.874 4 C -0.033 4.033 5 O -0.305 6.305 6 C -0.043 4.043 7 C 0.007 3.993 8 H 0.119 0.881 9 N -0.334 5.334 10 C 0.299 3.701 11 O -0.412 6.412 12 C 0.282 3.718 13 O -0.426 6.426 14 N -0.339 5.339 15 C 0.019 3.981 16 C -0.055 4.055 17 C -0.575 4.575 18 H 0.055 0.945 19 C -0.190 4.190 20 N -0.588 5.588 21 Si 0.775 3.225 22 H -0.191 1.191 23 H -0.212 1.212 24 H -0.164 1.164 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.260 0.740 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.657 -7.396 -23.820 28.436 hybrid contribution 0.300 0.023 1.024 1.067 sum -13.357 -7.373 -22.796 27.430 Atomic orbital electron populations 1.21804 0.92329 1.02662 1.03046 1.22823 0.98360 1.00813 0.92729 0.87354 1.23731 1.01536 0.81638 0.96394 1.89161 1.83210 1.27526 1.30633 1.23841 0.97388 0.99081 0.84015 1.22686 0.92949 0.90975 0.92726 0.88117 1.45733 1.47422 1.32620 1.07593 1.19981 0.81877 0.84530 0.83712 1.90766 1.48076 1.29964 1.72389 1.20285 0.82795 0.85257 0.83495 1.90744 1.49118 1.30539 1.72188 1.45986 1.46999 1.32465 1.08461 1.21287 0.92864 0.93366 0.90586 1.19694 0.97429 0.96929 0.91466 1.21210 1.28101 1.13503 0.94663 0.94542 1.25994 0.95546 0.99675 0.97769 1.70056 1.39557 1.41096 1.08091 0.85627 0.80436 0.78884 0.77505 1.19101 1.21200 1.16368 0.92494 0.90127 0.92295 0.86918 0.90702 0.91240 0.88676 0.73952 0.74534 0.92162 0.92176 0.94609 0.94747 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.94 71.98 0.64 -0.70 16 2 C -0.13 -1.35 3.48 -9.77 -0.03 -1.38 16 3 H 0.11 0.87 7.70 -2.38 -0.02 0.85 16 4 C 0.04 0.46 7.18 72.49 0.52 0.98 16 5 O -0.39 -6.73 11.65 -148.98 -1.74 -8.47 16 6 C 0.03 0.59 7.35 72.48 0.53 1.12 16 7 C 0.11 1.77 3.13 46.01 0.14 1.91 16 8 H 0.10 1.87 7.14 -2.39 -0.02 1.85 16 9 N -0.68 -12.56 5.08 -439.05 -2.23 -14.79 16 10 C 0.52 13.14 7.89 87.27 0.69 13.83 16 11 O -0.54 -15.48 16.12 -3.25 -0.05 -15.53 16 12 C 0.50 15.19 7.89 87.27 0.69 15.88 16 13 O -0.55 -18.79 16.48 -3.23 -0.05 -18.85 16 14 N -0.69 -21.94 5.55 -464.41 -2.58 -24.52 16 15 C 0.14 5.49 5.61 86.38 0.48 5.97 16 16 C -0.02 -0.76 4.16 29.85 0.12 -0.64 16 17 C -0.54 -29.93 9.66 25.60 0.25 -29.68 16 18 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 19 C 0.01 0.44 5.47 84.66 0.46 0.90 16 20 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 21 Si 0.95 42.44 27.47 68.60 1.88 44.32 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.24 -9.70 6.54 99.48 0.65 -9.04 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.11 0.84 7.87 -2.38 -0.02 0.82 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 1.13 8.06 -2.38 -0.02 1.11 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.42 6.66 7.85 -92.71 -0.73 5.94 16 33 H 0.42 12.04 7.94 -92.71 -0.74 11.30 16 34 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.04 1.50 7.20 -2.39 -0.02 1.48 16 37 H 0.03 1.42 7.57 -2.39 -0.02 1.41 16 38 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.63 322.45 -0.40 -69.03 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.44 Total: 18.71 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 4.50 Total: 8.20 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -4.51 Total: -97.42 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.84 Total: -42.84 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -68.63 -0.40 -69.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341948345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.265 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds