Wall clock time and date at job start Mon Mar 30 2020 01:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46812 * 2 1 4 4 H 1.09001 * 109.47334 * 304.99855 * 3 2 1 5 5 C 1.50702 * 109.46823 * 185.00200 * 3 2 1 6 6 H 1.07996 * 119.99863 * 239.99918 * 5 3 2 7 7 C 1.37882 * 120.00117 * 60.00292 * 5 3 2 8 8 N 1.31517 * 119.99522 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47063 * 90.00010 * 9 7 5 11 11 H 1.48498 * 109.47154 * 209.99891 * 9 7 5 12 12 H 1.48501 * 109.47254 * 330.00165 * 9 7 5 13 13 O 1.45195 * 109.46819 * 65.00395 * 3 2 1 14 14 C 1.34231 * 117.00349 * 269.99308 * 13 3 2 15 15 O 1.20828 * 119.99589 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00354 * 180.02562 * 14 13 3 17 17 N 1.46900 * 109.47050 * 179.97438 * 16 14 13 18 18 C 1.47185 * 110.99887 * 188.93643 * 17 16 14 19 19 C 1.52992 * 108.71825 * 167.62440 * 18 17 16 20 20 N 1.46018 * 110.03907 * 50.30733 * 19 18 17 21 21 C 1.33714 * 122.92358 * 341.83961 * 20 19 18 22 22 O 1.21278 * 118.61847 * 181.68683 * 21 20 19 23 23 C 1.46909 * 110.99602 * 66.04914 * 17 16 14 24 24 H 1.08996 * 109.47458 * 59.99474 * 1 2 3 25 25 H 1.09003 * 109.46895 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46889 * 299.99719 * 1 2 3 27 27 H 1.09004 * 109.46889 * 240.00281 * 2 1 3 28 28 H 1.08996 * 109.47458 * 120.00526 * 2 1 3 29 29 H 0.97004 * 119.99451 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46684 * 60.00324 * 16 14 13 31 31 H 1.08997 * 109.46938 * 300.00849 * 16 14 13 32 32 H 1.08996 * 109.59827 * 287.41046 * 18 17 16 33 33 H 1.09007 * 109.59444 * 47.86678 * 18 17 16 34 34 H 1.09003 * 109.37746 * 290.13187 * 19 18 17 35 35 H 1.09003 * 109.37887 * 170.47797 * 19 18 17 36 36 H 0.96997 * 118.53285 * 162.12828 * 20 19 18 37 37 H 1.09000 * 109.38197 * 53.50775 * 23 17 16 38 38 H 1.08999 * 109.38491 * 293.82036 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3376 -2.1734 9 14 6.0048 0.8814 -1.3820 10 1 6.5548 -0.3501 -0.7604 11 1 6.3828 0.9226 -2.8175 12 1 6.5568 2.0739 -0.6903 13 8 1.6558 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2193 2.7370 0.2657 16 6 0.0074 3.4224 2.5086 17 7 -1.3062 4.0347 2.2690 18 6 -1.6977 4.9001 3.3933 19 6 -2.9017 5.7429 2.9681 20 7 -3.9341 4.8857 2.3923 21 6 -3.6880 3.6478 1.9508 22 8 -4.5979 3.0152 1.4581 23 6 -2.3315 3.0079 2.0391 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8291 -0.0608 -2.9501 30 1 0.7245 4.1968 2.7811 31 1 -0.0710 2.6984 3.3195 32 1 -1.9668 4.2848 4.2518 33 1 -0.8674 5.5556 3.6565 34 1 -2.5858 6.4766 2.2265 35 1 -3.3057 6.2612 3.8378 36 1 -4.8378 5.2313 2.3234 37 1 -2.3206 2.2949 2.8635 38 1 -2.1168 2.4847 1.1073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345888330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:07 Heat of formation + Delta-G solvation = -113.612499 kcal Electronic energy + Delta-G solvation = -21451.994325 eV Core-core repulsion = 18101.793553 eV Total energy + Delta-G solvation = -3350.200771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53561 -39.50137 -37.36674 -35.81047 -34.53394 -33.51639 -31.39592 -29.96588 -29.13169 -27.24420 -25.13115 -23.41405 -22.92597 -20.77281 -19.49644 -19.37062 -17.52065 -17.36370 -16.78144 -16.42305 -15.95249 -15.53077 -15.25910 -14.77382 -14.69255 -14.41670 -13.92782 -13.34811 -12.95672 -12.83495 -12.79029 -12.25404 -12.06431 -11.82056 -11.64516 -11.36317 -11.28524 -11.14634 -10.94166 -10.64064 -10.28559 -10.03165 -9.79380 -9.56627 -9.36599 -9.26140 -8.81706 -8.65222 -8.45781 -6.18932 -4.26261 2.54684 2.96946 3.04158 3.22321 3.24022 3.30478 3.34980 3.89095 4.32556 4.41245 4.48343 4.83680 4.90064 5.12921 5.13974 5.23398 5.28648 5.33852 5.53875 5.65107 5.74786 6.22141 6.27870 6.43034 6.49819 6.52918 6.73379 6.86266 6.96966 7.12464 7.16132 7.26227 7.61371 7.73531 7.95527 8.10037 8.15318 8.63688 8.88566 9.39059 10.87754 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035246 B = 0.004320 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.230335 B = 6479.618069 C = 6970.727157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.358 6.358 14 C 0.450 3.550 15 O -0.499 6.499 16 C 0.058 3.942 17 N -0.517 5.517 18 C 0.033 3.967 19 C 0.118 3.882 20 N -0.722 5.722 21 C 0.531 3.469 22 O -0.552 6.552 23 C 0.029 3.971 24 H 0.054 0.946 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.399 0.601 37 H 0.070 0.930 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 9.093 12.888 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.274 6.274 14 C 0.291 3.709 15 O -0.388 6.388 16 C -0.070 4.070 17 N -0.244 5.244 18 C -0.095 4.095 19 C -0.007 4.007 20 N -0.376 5.376 21 C 0.318 3.682 22 O -0.429 6.429 23 C -0.101 4.101 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.162 8.833 11.703 17.289 hybrid contribution 0.592 -0.344 0.498 0.847 sum -8.570 8.489 12.201 17.158 Atomic orbital electron populations 1.21859 0.98330 0.99078 1.00640 1.22028 0.92633 0.99389 1.03353 1.20678 0.94974 0.88688 0.78588 0.93398 1.21038 0.89685 1.39058 1.06247 0.91364 1.24885 0.99205 0.94783 0.95051 1.69894 1.35368 1.37739 1.09465 0.86287 0.83931 0.78641 0.77358 1.20383 1.20978 1.19646 1.86452 1.34145 1.62461 1.44327 1.22940 0.81264 0.77304 0.89375 1.90600 1.55156 1.57562 1.35442 1.21646 0.91339 0.99529 0.94483 1.62126 1.01241 1.20701 1.40316 1.22548 0.98395 0.96687 0.91859 1.21475 0.87689 0.92900 0.98657 1.45540 1.13087 1.15367 1.63571 1.20113 0.90387 0.81318 0.76393 1.90767 1.45511 1.61864 1.44738 1.22584 0.87476 0.93956 1.06074 0.92685 0.94772 0.95211 0.87323 0.94034 0.92371 0.86443 0.90740 0.93355 0.88102 0.90585 0.90064 0.76560 0.91233 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.57 37.16 0.32 -2.76 16 2 C -0.14 -3.33 5.49 -26.73 -0.15 -3.48 16 3 C 0.22 5.80 2.25 -27.88 -0.06 5.74 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.36 8.90 -34.44 -0.31 -14.67 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.88 11.29 55.43 0.63 -24.25 16 9 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 O -0.36 -8.07 9.81 -39.26 -0.39 -8.46 16 14 C 0.45 8.69 6.18 36.00 0.22 8.91 16 15 O -0.50 -11.00 11.45 -18.75 -0.21 -11.22 16 16 C 0.06 0.76 5.55 -4.98 -0.03 0.74 16 17 N -0.52 -6.45 4.47 -237.55 -1.06 -7.51 16 18 C 0.03 0.26 5.60 -3.67 -0.02 0.24 16 19 C 0.12 0.83 7.39 -4.31 -0.03 0.80 16 20 N -0.72 -7.34 5.52 -61.05 -0.34 -7.67 16 21 C 0.53 7.61 7.81 -11.68 -0.09 7.52 16 22 O -0.55 -10.06 17.82 5.56 0.10 -9.96 16 23 C 0.03 0.41 5.14 -5.19 -0.03 0.38 16 24 H 0.05 1.26 7.80 -51.93 -0.40 0.86 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.60 6.06 -51.93 -0.31 0.29 16 27 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.12 1.26 7.93 -51.93 -0.41 0.85 16 31 H 0.07 0.82 8.05 -51.93 -0.42 0.41 16 32 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.10 0.58 7.91 -51.93 -0.41 0.17 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.40 3.44 8.84 -40.82 -0.36 3.08 16 37 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 38 H 0.14 2.41 6.01 -51.93 -0.31 2.10 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -33.18 309.91 -7.28 -40.46 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.39 Total: 3.13 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.27 Total: 5.04 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: -0.77 Total: -39.44 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.50 Total: -29.63 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.18 -7.28 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345888330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.156 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds