Wall clock time and date at job start Mon Mar 30 2020 01:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46812 * 2 1 4 4 H 1.09001 * 109.47334 * 304.99855 * 3 2 1 5 5 C 1.50702 * 109.46823 * 185.00200 * 3 2 1 6 6 H 1.07996 * 119.99863 * 239.99918 * 5 3 2 7 7 C 1.37882 * 120.00117 * 60.00292 * 5 3 2 8 8 N 1.31517 * 119.99522 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47063 * 90.00010 * 9 7 5 11 11 H 1.48498 * 109.47154 * 209.99891 * 9 7 5 12 12 H 1.48501 * 109.47254 * 330.00165 * 9 7 5 13 13 O 1.45195 * 109.46819 * 65.00395 * 3 2 1 14 14 C 1.34231 * 117.00349 * 269.99308 * 13 3 2 15 15 O 1.20828 * 119.99589 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00354 * 180.02562 * 14 13 3 17 17 N 1.46900 * 109.47050 * 179.97438 * 16 14 13 18 18 C 1.47185 * 110.99887 * 188.93643 * 17 16 14 19 19 C 1.52992 * 108.71825 * 167.62440 * 18 17 16 20 20 N 1.46018 * 110.03907 * 50.30733 * 19 18 17 21 21 C 1.33714 * 122.92358 * 341.83961 * 20 19 18 22 22 O 1.21278 * 118.61847 * 181.68683 * 21 20 19 23 23 C 1.46909 * 110.99602 * 66.04914 * 17 16 14 24 24 H 1.08996 * 109.47458 * 59.99474 * 1 2 3 25 25 H 1.09003 * 109.46895 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46889 * 299.99719 * 1 2 3 27 27 H 1.09004 * 109.46889 * 240.00281 * 2 1 3 28 28 H 1.08996 * 109.47458 * 120.00526 * 2 1 3 29 29 H 0.97004 * 119.99451 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46684 * 60.00324 * 16 14 13 31 31 H 1.08997 * 109.46938 * 300.00849 * 16 14 13 32 32 H 1.08996 * 109.59827 * 287.41046 * 18 17 16 33 33 H 1.09007 * 109.59444 * 47.86678 * 18 17 16 34 34 H 1.09003 * 109.37746 * 290.13187 * 19 18 17 35 35 H 1.09003 * 109.37887 * 170.47797 * 19 18 17 36 36 H 0.96997 * 118.53285 * 162.12828 * 20 19 18 37 37 H 1.09000 * 109.38197 * 53.50775 * 23 17 16 38 38 H 1.08999 * 109.38491 * 293.82036 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3376 -2.1734 9 14 6.0048 0.8814 -1.3820 10 1 6.5548 -0.3501 -0.7604 11 1 6.3828 0.9226 -2.8175 12 1 6.5568 2.0739 -0.6903 13 8 1.6558 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2193 2.7370 0.2657 16 6 0.0074 3.4224 2.5086 17 7 -1.3062 4.0347 2.2690 18 6 -1.6977 4.9001 3.3933 19 6 -2.9017 5.7429 2.9681 20 7 -3.9341 4.8857 2.3923 21 6 -3.6880 3.6478 1.9508 22 8 -4.5979 3.0152 1.4581 23 6 -2.3315 3.0079 2.0391 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8291 -0.0608 -2.9501 30 1 0.7245 4.1968 2.7811 31 1 -0.0710 2.6984 3.3195 32 1 -1.9668 4.2848 4.2518 33 1 -0.8674 5.5556 3.6565 34 1 -2.5858 6.4766 2.2265 35 1 -3.3057 6.2612 3.8378 36 1 -4.8378 5.2313 2.3234 37 1 -2.3206 2.2949 2.8635 38 1 -2.1168 2.4847 1.1073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345888330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:06 Heat of formation + Delta-G solvation = -139.360495 kcal Electronic energy + Delta-G solvation = -21453.110842 eV Core-core repulsion = 18101.793553 eV Total energy + Delta-G solvation = -3351.317288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70089 -40.95643 -38.52562 -37.39753 -35.54706 -35.47032 -33.36275 -30.79663 -30.34101 -29.13855 -26.23275 -25.06089 -24.07168 -22.43710 -21.18727 -20.28534 -18.90969 -18.59816 -18.38861 -17.72704 -17.28657 -16.98255 -16.67348 -16.22294 -15.71587 -15.66791 -15.14951 -14.76494 -14.61976 -14.21364 -14.03064 -13.45729 -13.35825 -13.20786 -13.13103 -12.97142 -12.83949 -12.61790 -12.53979 -12.38385 -12.11968 -11.75359 -11.40369 -11.22128 -10.98633 -10.79617 -10.49885 -10.11901 -9.56979 -8.25332 -6.42215 1.42821 1.44268 1.45248 1.48007 1.56211 1.90469 2.28065 2.40988 2.75923 3.04616 3.55529 3.83701 3.94961 4.03684 4.24857 4.31384 4.36934 4.38043 4.39189 4.56103 4.58781 4.62676 4.77813 4.85740 5.02295 5.08517 5.22113 5.39015 5.52938 5.55933 5.66735 5.70353 5.93319 6.02519 6.19147 6.21051 6.64581 7.09438 7.11333 7.30961 8.81274 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035246 B = 0.004320 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.230335 B = 6479.618069 C = 6970.727157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.228 3.772 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.980 3.020 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.264 1.264 13 O -0.365 6.365 14 C 0.438 3.562 15 O -0.532 6.532 16 C 0.072 3.928 17 N -0.534 5.534 18 C 0.030 3.970 19 C 0.112 3.888 20 N -0.708 5.708 21 C 0.526 3.474 22 O -0.604 6.604 23 C 0.033 3.967 24 H 0.031 0.969 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.269 0.731 30 H 0.151 0.849 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.407 0.593 37 H 0.086 0.914 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 10.590 15.535 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.804 3.196 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.188 1.188 13 O -0.281 6.281 14 C 0.282 3.718 15 O -0.422 6.422 16 C -0.056 4.056 17 N -0.262 5.262 18 C -0.096 4.096 19 C -0.012 4.012 20 N -0.359 5.359 21 C 0.313 3.687 22 O -0.486 6.486 23 C -0.097 4.097 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.096 0.904 35 H 0.143 0.857 36 H 0.244 0.756 37 H 0.103 0.897 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.469 10.393 14.399 19.674 hybrid contribution 0.306 -0.696 -0.301 0.817 sum -8.163 9.697 14.099 18.959 Atomic orbital electron populations 1.21697 0.96408 1.00385 0.99999 1.21864 0.94255 0.98359 1.02272 1.20283 0.94404 0.89056 0.78791 0.97817 1.21358 0.90610 1.39778 1.06823 0.91355 1.25814 1.04181 0.93967 0.94403 1.70032 1.37429 1.38063 1.09907 0.85215 0.77804 0.79150 0.77449 1.19296 1.20611 1.18777 1.86435 1.36256 1.63153 1.42292 1.24349 0.79662 0.76440 0.91350 1.90605 1.55587 1.58528 1.37449 1.21755 0.92185 1.00573 0.91062 1.62054 1.00395 1.20397 1.43349 1.22807 0.99745 0.96473 0.90592 1.21841 0.86846 0.92216 1.00249 1.45544 1.14459 1.14121 1.61803 1.20194 0.89850 0.82390 0.76251 1.90736 1.46844 1.63617 1.47410 1.22335 0.88043 0.94750 1.04594 0.94949 0.92347 0.94223 0.89862 0.93420 0.92171 0.83176 0.87844 0.91613 0.85015 0.90376 0.85701 0.75619 0.89671 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.57 71.98 0.62 -5.06 16 2 C -0.13 -6.52 5.49 30.60 0.17 -6.36 16 3 C 0.23 12.27 2.25 29.85 0.07 12.34 16 4 H 0.00 0.25 7.16 -2.39 -0.02 0.23 16 5 C -0.55 -30.72 8.90 25.60 0.23 -30.49 16 6 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.92 -52.78 11.29 21.45 0.24 -52.53 16 9 Si 0.98 42.58 29.54 68.60 2.03 44.60 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 O -0.36 -16.61 9.81 -51.43 -0.50 -17.12 16 14 C 0.44 16.93 6.18 71.23 0.44 17.37 16 15 O -0.53 -24.37 11.45 21.96 0.25 -24.12 16 16 C 0.07 1.69 5.55 85.56 0.47 2.16 16 17 N -0.53 -12.07 4.47 -905.46 -4.05 -16.12 16 18 C 0.03 0.34 5.60 86.25 0.48 0.82 16 19 C 0.11 1.12 7.39 86.47 0.64 1.76 16 20 N -0.71 -12.91 5.52 -466.06 -2.57 -15.48 16 21 C 0.53 14.90 7.81 87.68 0.69 15.59 16 22 O -0.60 -22.72 17.82 -3.02 -0.05 -22.77 16 23 C 0.03 0.92 5.14 85.41 0.44 1.36 16 24 H 0.03 1.55 7.80 -2.39 -0.02 1.53 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.04 1.65 6.06 -2.38 -0.01 1.63 16 27 H 0.08 4.63 5.95 -2.38 -0.01 4.62 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.15 2.58 7.93 -2.39 -0.02 2.56 16 31 H 0.10 1.89 8.05 -2.39 -0.02 1.87 16 32 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 33 H 0.13 0.74 7.91 -2.38 -0.02 0.72 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.41 6.26 8.84 -92.71 -0.82 5.44 16 37 H 0.09 2.01 8.05 -2.39 -0.02 1.99 16 38 H 0.09 3.46 6.01 -2.39 -0.01 3.45 16 Total: -1.00 -77.29 309.91 0.29 -77.00 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.26 Total: 15.70 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 4.69 Total: 10.83 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -6.38 Total: -84.14 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -0.31 Total: -64.00 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -77.29 0.29 -77.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345888330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.358 kcal (2) G-P(sol) polarization free energy of solvation -77.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds