Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34642 * 116.99728 * 2 1 4 4 O 1.21512 * 119.99727 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00119 * 180.02562 * 3 2 1 6 6 C 1.47581 * 134.49409 * 180.02562 * 5 3 2 7 7 C 1.53939 * 86.11796 * 155.35494 * 6 5 3 8 8 C 1.53007 * 113.74005 * 269.14894 * 7 6 5 9 9 N 1.46501 * 113.74495 * 137.95372 * 7 6 5 10 10 C 1.34773 * 120.00147 * 181.92419 * 9 7 6 11 11 O 1.21286 * 120.00056 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00173 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47115 * 59.99130 * 12 10 9 14 14 C 1.53007 * 109.46789 * 299.99513 * 12 10 9 15 15 C 1.50693 * 109.47295 * 180.02562 * 12 10 9 16 16 H 1.07994 * 120.00278 * 5.37492 * 15 12 10 17 17 C 1.37881 * 120.00193 * 185.37888 * 15 12 10 18 18 N 1.31510 * 120.00298 * 185.15595 * 17 15 12 19 19 Si 1.86802 * 119.99762 * 5.16022 * 17 15 12 20 20 H 1.48505 * 109.47044 * 270.00097 * 19 17 15 21 21 H 1.48504 * 109.47475 * 29.99918 * 19 17 15 22 22 H 1.48496 * 109.47439 * 149.99927 * 19 17 15 23 23 C 1.47812 * 134.45624 * 359.86200 * 5 3 2 24 24 H 1.09005 * 109.47050 * 60.00573 * 1 2 3 25 25 H 1.09003 * 109.46430 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47207 * 300.00069 * 1 2 3 27 27 H 1.08998 * 113.77223 * 41.04524 * 6 5 3 28 28 H 1.09008 * 113.76479 * 269.65328 * 6 5 3 29 29 H 1.08996 * 109.47393 * 298.07713 * 8 7 6 30 30 H 1.09005 * 109.46818 * 58.07530 * 8 7 6 31 31 H 1.08997 * 109.47174 * 178.06978 * 8 7 6 32 32 H 0.97003 * 119.99906 * 1.91682 * 9 7 6 33 33 H 1.09001 * 109.46970 * 174.98831 * 14 12 10 34 34 H 1.08997 * 109.47121 * 294.99051 * 14 12 10 35 35 H 1.09003 * 109.46717 * 54.99401 * 14 12 10 36 36 H 0.96993 * 120.00197 * 355.00134 * 18 17 15 37 37 H 1.08996 * 113.76824 * 90.38031 * 23 5 3 38 38 H 1.09005 * 113.83381 * 318.91988 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 -0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.3868 2.3758 -0.0002 7 6 5.3637 1.3725 0.6392 8 6 5.3324 1.3718 2.1689 9 7 6.7224 1.4441 0.0959 10 6 7.6707 0.5948 0.5384 11 8 7.3994 -0.2285 1.3867 12 6 9.0684 0.6688 -0.0201 13 1 9.4865 1.6561 0.1766 14 6 9.0280 0.4236 -1.5298 15 6 9.9277 -0.3810 0.6359 16 1 9.4854 -1.0922 1.3177 17 6 11.2788 -0.4336 0.3659 18 7 12.0102 -1.4097 0.8574 19 14 12.0704 0.8820 -0.6982 20 1 12.0220 0.4625 -2.1219 21 1 11.3339 2.1611 -0.5338 22 1 13.4844 1.0684 -0.2848 23 6 4.4982 0.2710 0.0014 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 4.1146 3.2029 0.6554 28 1 4.6819 2.7015 -0.9978 29 1 5.6306 2.3527 2.5389 30 1 4.3226 1.1458 2.5115 31 1 6.0216 0.6163 2.5461 32 1 6.9394 2.1027 -0.5824 33 1 10.0249 0.5647 -1.9476 34 1 8.6938 -0.5957 -1.7235 35 1 8.3367 1.1271 -1.9937 36 1 11.6153 -2.0514 1.4682 37 1 4.8261 -0.0234 -0.9956 38 1 4.3148 -0.5792 0.6585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347335456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = -75.543823 kcal Electronic energy + Delta-G solvation = -21178.038774 eV Core-core repulsion = 17829.488784 eV Total energy + Delta-G solvation = -3348.549990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06895 -39.76108 -38.20493 -36.30294 -33.88667 -33.58700 -31.38898 -29.93709 -28.25425 -26.56322 -26.47793 -24.87947 -23.13979 -21.11545 -19.62581 -19.20071 -18.20694 -17.42184 -17.22271 -16.98481 -16.26781 -15.75973 -15.03741 -14.40406 -14.18008 -13.86049 -13.66119 -13.50940 -13.33710 -13.25838 -12.59787 -12.34704 -12.21836 -12.05018 -11.80593 -11.79515 -11.52062 -11.21749 -10.97255 -10.82805 -10.72186 -10.61130 -10.23067 -9.83083 -9.11405 -8.76922 -8.72176 -8.65194 -8.41231 -6.44537 -4.07967 1.75468 2.63577 3.30298 3.36885 3.41501 3.50326 3.53266 3.68333 4.18763 4.45269 4.56559 4.86228 4.91598 4.98526 5.07997 5.17389 5.29249 5.30504 5.34429 5.55428 5.58666 5.78522 5.89750 5.91802 6.11345 6.11736 6.28622 6.41584 6.48417 6.73527 6.83556 7.15660 7.39554 7.70771 8.06098 8.15052 8.45845 8.98638 9.01029 9.63415 10.97361 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041604 B = 0.003958 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.855243 B = 7071.987841 C = 7221.335063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.368 6.368 3 C 0.674 3.326 4 O -0.576 6.576 5 N -0.627 5.627 6 C 0.131 3.869 7 C 0.146 3.854 8 C -0.150 4.150 9 N -0.735 5.735 10 C 0.532 3.468 11 O -0.526 6.526 12 C -0.005 4.005 13 H 0.053 0.947 14 C -0.143 4.143 15 C -0.581 4.581 16 H 0.076 0.924 17 C 0.025 3.975 18 N -0.912 5.912 19 Si 1.055 2.945 20 H -0.284 1.284 21 H -0.280 1.280 22 H -0.290 1.290 23 C 0.102 3.898 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.399 0.601 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.269 0.731 37 H 0.092 0.908 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.485 7.090 -4.165 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.281 6.281 3 C 0.429 3.571 4 O -0.466 6.466 5 N -0.370 5.370 6 C 0.009 3.991 7 C 0.058 3.942 8 C -0.207 4.207 9 N -0.391 5.391 10 C 0.322 3.678 11 O -0.399 6.399 12 C -0.027 4.027 13 H 0.071 0.929 14 C -0.201 4.201 15 C -0.620 4.620 16 H 0.094 0.906 17 C -0.179 4.179 18 N -0.547 5.547 19 Si 0.885 3.115 20 H -0.211 1.211 21 H -0.206 1.206 22 H -0.216 1.216 23 C -0.021 4.021 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.234 0.766 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.735 7.169 -4.224 18.689 hybrid contribution -1.630 -0.123 0.195 1.647 sum -18.365 7.046 -4.029 20.079 Atomic orbital electron populations 1.23198 0.74469 1.03472 1.02627 1.86282 1.23976 1.30884 1.86999 1.17438 0.81430 0.82138 0.76047 1.90991 1.63647 1.35167 1.56777 1.48283 1.00597 1.12288 1.75821 1.23552 0.82756 0.91231 1.01522 1.21976 0.82110 0.94582 0.95525 1.21969 1.03287 1.04193 0.91296 1.46239 1.08805 1.39377 1.44652 1.21468 0.86990 0.78617 0.80774 1.90506 1.81577 1.36328 1.31538 1.19390 0.89291 1.00421 0.93565 0.92949 1.22095 1.00325 1.00826 0.96856 1.22029 0.93775 1.16119 1.30055 0.90619 1.25770 0.94001 0.99436 0.98666 1.70775 1.39806 1.13865 1.30236 0.83856 0.75990 0.75703 0.75941 1.21071 1.20637 1.21625 1.23868 0.82137 0.94286 1.01848 0.91939 0.87931 0.91869 0.88798 0.88824 0.91997 0.92097 0.88092 0.76593 0.92986 0.92588 0.95108 0.92060 0.88956 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -4.68 10.55 -40.33 -0.43 -5.10 16 3 C 0.67 9.68 8.92 54.05 0.48 10.16 16 4 O -0.58 -9.55 16.86 -19.28 -0.33 -9.87 16 5 N -0.63 -8.06 3.47 -183.79 -0.64 -8.70 16 6 C 0.13 1.40 8.11 -2.97 -0.02 1.37 16 7 C 0.15 1.88 1.28 -134.05 -0.17 1.70 16 8 C -0.15 -2.06 9.01 37.16 0.33 -1.72 16 9 N -0.74 -10.41 5.20 -49.08 -0.26 -10.67 16 10 C 0.53 10.52 6.91 -10.99 -0.08 10.45 16 11 O -0.53 -12.23 13.08 5.55 0.07 -12.16 16 12 C 0.00 -0.10 2.22 -92.92 -0.21 -0.31 16 13 H 0.05 1.11 6.65 -51.93 -0.35 0.77 16 14 C -0.14 -2.71 8.72 37.16 0.32 -2.39 16 15 C -0.58 -16.07 8.72 -34.44 -0.30 -16.37 16 16 H 0.08 2.37 7.00 -52.49 -0.37 2.01 16 17 C 0.03 0.71 5.43 -17.82 -0.10 0.62 16 18 N -0.91 -27.87 13.70 55.43 0.76 -27.11 16 19 Si 1.06 24.08 25.29 -169.99 -4.30 19.79 16 20 H -0.28 -6.10 6.81 56.52 0.38 -5.72 16 21 H -0.28 -5.72 6.36 56.52 0.36 -5.36 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.10 1.31 8.23 -2.85 -0.02 1.29 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 28 H 0.09 0.81 8.12 -51.92 -0.42 0.38 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.78 8.00 -51.93 -0.42 0.37 16 31 H 0.10 1.73 5.58 -51.93 -0.29 1.44 16 32 H 0.40 4.48 8.00 -40.82 -0.33 4.15 16 33 H 0.05 1.01 4.40 -51.93 -0.23 0.78 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.44 7.43 -51.93 -0.39 0.06 16 36 H 0.27 8.30 8.72 -40.82 -0.36 7.94 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -34.33 315.47 -4.41 -38.75 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.37 Total: 3.95 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 1.31 Total: 6.37 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.13 Total: -46.48 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.68 Total: -27.13 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -4.30 Total: 19.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.33 -4.41 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347335456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.797 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds