Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34642 * 116.99728 * 2 1 4 4 O 1.21512 * 119.99727 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00119 * 180.02562 * 3 2 1 6 6 C 1.47581 * 134.49409 * 180.02562 * 5 3 2 7 7 C 1.53939 * 86.11796 * 155.35494 * 6 5 3 8 8 C 1.53007 * 113.74005 * 269.14894 * 7 6 5 9 9 N 1.46501 * 113.74495 * 137.95372 * 7 6 5 10 10 C 1.34773 * 120.00147 * 181.92419 * 9 7 6 11 11 O 1.21286 * 120.00056 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00173 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47115 * 59.99130 * 12 10 9 14 14 C 1.53007 * 109.46789 * 299.99513 * 12 10 9 15 15 C 1.50693 * 109.47295 * 180.02562 * 12 10 9 16 16 H 1.07994 * 120.00278 * 5.37492 * 15 12 10 17 17 C 1.37881 * 120.00193 * 185.37888 * 15 12 10 18 18 N 1.31510 * 120.00298 * 185.15595 * 17 15 12 19 19 Si 1.86802 * 119.99762 * 5.16022 * 17 15 12 20 20 H 1.48505 * 109.47044 * 270.00097 * 19 17 15 21 21 H 1.48504 * 109.47475 * 29.99918 * 19 17 15 22 22 H 1.48496 * 109.47439 * 149.99927 * 19 17 15 23 23 C 1.47812 * 134.45624 * 359.86200 * 5 3 2 24 24 H 1.09005 * 109.47050 * 60.00573 * 1 2 3 25 25 H 1.09003 * 109.46430 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47207 * 300.00069 * 1 2 3 27 27 H 1.08998 * 113.77223 * 41.04524 * 6 5 3 28 28 H 1.09008 * 113.76479 * 269.65328 * 6 5 3 29 29 H 1.08996 * 109.47393 * 298.07713 * 8 7 6 30 30 H 1.09005 * 109.46818 * 58.07530 * 8 7 6 31 31 H 1.08997 * 109.47174 * 178.06978 * 8 7 6 32 32 H 0.97003 * 119.99906 * 1.91682 * 9 7 6 33 33 H 1.09001 * 109.46970 * 174.98831 * 14 12 10 34 34 H 1.08997 * 109.47121 * 294.99051 * 14 12 10 35 35 H 1.09003 * 109.46717 * 54.99401 * 14 12 10 36 36 H 0.96993 * 120.00197 * 355.00134 * 18 17 15 37 37 H 1.08996 * 113.76824 * 90.38031 * 23 5 3 38 38 H 1.09005 * 113.83381 * 318.91988 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 -0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.3868 2.3758 -0.0002 7 6 5.3637 1.3725 0.6392 8 6 5.3324 1.3718 2.1689 9 7 6.7224 1.4441 0.0959 10 6 7.6707 0.5948 0.5384 11 8 7.3994 -0.2285 1.3867 12 6 9.0684 0.6688 -0.0201 13 1 9.4865 1.6561 0.1766 14 6 9.0280 0.4236 -1.5298 15 6 9.9277 -0.3810 0.6359 16 1 9.4854 -1.0922 1.3177 17 6 11.2788 -0.4336 0.3659 18 7 12.0102 -1.4097 0.8574 19 14 12.0704 0.8820 -0.6982 20 1 12.0220 0.4625 -2.1219 21 1 11.3339 2.1611 -0.5338 22 1 13.4844 1.0684 -0.2848 23 6 4.4982 0.2710 0.0014 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 4.1146 3.2029 0.6554 28 1 4.6819 2.7015 -0.9978 29 1 5.6306 2.3527 2.5389 30 1 4.3226 1.1458 2.5115 31 1 6.0216 0.6163 2.5461 32 1 6.9394 2.1027 -0.5824 33 1 10.0249 0.5647 -1.9476 34 1 8.6938 -0.5957 -1.7235 35 1 8.3367 1.1271 -1.9937 36 1 11.6153 -2.0514 1.4682 37 1 4.8261 -0.0234 -0.9956 38 1 4.3148 -0.5792 0.6585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347335456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = -103.065216 kcal Electronic energy + Delta-G solvation = -21179.232191 eV Core-core repulsion = 17829.488784 eV Total energy + Delta-G solvation = -3349.743407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.14039 -40.93614 -39.55498 -37.35676 -35.77396 -34.93723 -33.21151 -31.18486 -29.16474 -27.54960 -27.35734 -26.71658 -24.77722 -22.30876 -21.02098 -20.45277 -19.44229 -19.17835 -18.25926 -18.04699 -17.77661 -16.85038 -16.25383 -15.77307 -15.53499 -15.12663 -15.05075 -14.75306 -14.49947 -14.36555 -13.98923 -13.89213 -13.37728 -13.30300 -13.08759 -13.03587 -12.85630 -12.75419 -12.30894 -11.99632 -11.87613 -11.86825 -11.84698 -11.51473 -10.75580 -10.63294 -10.24372 -10.19583 -9.92218 -8.69850 -6.33696 0.82918 1.50089 1.56974 1.62576 1.76988 1.88334 2.33090 2.58091 2.65981 3.15792 3.19627 3.54534 3.86561 4.17888 4.20202 4.28942 4.31524 4.40790 4.42417 4.53745 4.55793 4.64266 4.69141 4.73544 4.75984 4.80569 4.91961 5.16716 5.17994 5.29220 5.57682 5.59380 5.89489 6.11097 6.37031 6.65354 6.79456 7.03085 7.46929 7.56232 8.71014 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041604 B = 0.003958 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.855243 B = 7071.987841 C = 7221.335063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.378 6.378 3 C 0.670 3.330 4 O -0.602 6.602 5 N -0.628 5.628 6 C 0.142 3.858 7 C 0.142 3.858 8 C -0.146 4.146 9 N -0.707 5.707 10 C 0.533 3.467 11 O -0.572 6.572 12 C -0.012 4.012 13 H 0.073 0.927 14 C -0.138 4.138 15 C -0.586 4.586 16 H 0.017 0.983 17 C -0.033 4.033 18 N -0.951 5.951 19 Si 1.097 2.903 20 H -0.258 1.258 21 H -0.232 1.232 22 H -0.301 1.301 23 C 0.102 3.898 24 H 0.065 0.935 25 H 0.133 0.867 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.420 0.580 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.246 0.754 37 H 0.104 0.896 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.765 10.054 -6.690 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.292 6.292 3 C 0.426 3.574 4 O -0.494 6.494 5 N -0.370 5.370 6 C 0.021 3.979 7 C 0.054 3.946 8 C -0.204 4.204 9 N -0.363 5.363 10 C 0.321 3.679 11 O -0.450 6.450 12 C -0.034 4.034 13 H 0.091 0.909 14 C -0.196 4.196 15 C -0.624 4.624 16 H 0.035 0.965 17 C -0.228 4.228 18 N -0.588 5.588 19 Si 0.917 3.083 20 H -0.183 1.183 21 H -0.155 1.155 22 H -0.229 1.229 23 C -0.021 4.021 24 H 0.083 0.917 25 H 0.152 0.848 26 H 0.081 0.919 27 H 0.124 0.876 28 H 0.145 0.855 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.122 0.878 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.075 10.165 -6.778 21.817 hybrid contribution -1.356 -1.133 1.081 2.071 sum -19.431 9.032 -5.697 22.172 Atomic orbital electron populations 1.23525 0.72503 1.05620 1.02775 1.86290 1.25995 1.30209 1.86678 1.17591 0.81722 0.82225 0.75855 1.90968 1.64233 1.36039 1.58180 1.48331 1.00372 1.13025 1.75267 1.23695 0.80606 0.90319 1.03261 1.22012 0.81408 0.96187 0.94964 1.21862 1.02582 1.03640 0.92273 1.45779 1.08341 1.38071 1.44086 1.21113 0.87371 0.79034 0.80345 1.90526 1.82270 1.38578 1.33602 1.19361 0.89752 0.98961 0.95330 0.90943 1.21982 1.01865 1.01479 0.94255 1.22182 0.94919 1.16390 1.28929 0.96468 1.27524 0.95057 1.00658 0.99571 1.70941 1.40404 1.15441 1.32011 0.83441 0.74826 0.74690 0.75297 1.18322 1.15537 1.22862 1.23863 0.82148 0.93952 1.02162 0.91654 0.84849 0.91889 0.87589 0.85526 0.90634 0.91528 0.91863 0.74140 0.93002 0.94346 0.89460 0.94521 0.87771 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.78 10.56 113.37 1.20 1.98 16 2 O -0.38 -9.07 10.55 -55.52 -0.59 -9.66 16 3 C 0.67 18.04 8.92 129.79 1.16 19.20 16 4 O -0.60 -18.90 16.86 19.80 0.33 -18.57 16 5 N -0.63 -14.55 3.47 -965.81 -3.35 -17.91 16 6 C 0.14 2.45 8.11 86.48 0.70 3.15 16 7 C 0.14 3.29 1.28 5.35 0.01 3.29 16 8 C -0.15 -3.88 9.01 71.98 0.65 -3.23 16 9 N -0.71 -17.68 5.20 -427.59 -2.22 -19.90 16 10 C 0.53 20.44 6.91 87.66 0.61 21.04 16 11 O -0.57 -27.47 13.08 -3.05 -0.04 -27.51 16 12 C -0.01 -0.51 2.22 -12.29 -0.03 -0.54 16 13 H 0.07 2.77 6.65 -2.39 -0.02 2.76 16 14 C -0.14 -4.70 8.72 71.98 0.63 -4.07 16 15 C -0.59 -33.27 8.72 25.60 0.22 -33.05 16 16 H 0.02 1.14 7.00 -2.91 -0.02 1.12 16 17 C -0.03 -1.89 5.43 84.66 0.46 -1.43 16 18 N -0.95 -60.75 13.70 21.45 0.29 -60.46 16 19 Si 1.10 46.55 25.29 68.60 1.73 48.29 16 20 H -0.26 -9.87 6.81 99.48 0.68 -9.19 16 21 H -0.23 -8.00 6.36 99.48 0.63 -7.37 16 22 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 23 C 0.10 2.43 8.23 86.43 0.71 3.14 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.13 1.21 8.14 -2.39 -0.02 1.20 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.11 1.67 8.10 -2.39 -0.02 1.65 16 28 H 0.13 1.44 8.12 -2.38 -0.02 1.42 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.66 8.00 -2.38 -0.02 1.65 16 31 H 0.06 2.23 5.58 -2.39 -0.01 2.21 16 32 H 0.42 7.10 8.00 -92.71 -0.74 6.36 16 33 H 0.05 1.78 4.40 -2.39 -0.01 1.77 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.98 7.43 -2.39 -0.02 1.97 16 36 H 0.25 16.31 8.72 -92.71 -0.81 15.50 16 37 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.08 2.10 8.10 -2.38 -0.02 2.08 16 Total: -1.00 -81.08 315.47 2.67 -78.41 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.20 Total: 17.83 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.31 Total: 9.49 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -5.28 Total: -98.27 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.29 Total: -55.74 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.73 Total: 48.29 kcal Total: -81.08 2.67 -78.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347335456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.659 kcal (2) G-P(sol) polarization free energy of solvation -81.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds