Wall clock time and date at job start Mon Mar 30 2020 01:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 C 1.50696 * 109.47117 * 240.00010 * 2 1 3 5 5 N 1.34782 * 120.00054 * 59.99764 * 4 2 1 6 6 O 1.21283 * 119.99946 * 239.99838 * 4 2 1 7 7 C 1.50695 * 109.47073 * 119.99773 * 2 1 3 8 8 O 1.21282 * 120.00054 * 113.88866 * 7 2 1 9 9 N 1.34773 * 120.00510 * 293.88445 * 7 2 1 10 10 C 1.47428 * 125.65418 * 174.48467 * 9 7 2 11 11 C 1.54900 * 104.93038 * 155.84245 * 10 9 7 12 12 C 1.55441 * 101.45556 * 37.00257 * 11 10 9 13 13 O 1.42906 * 110.70704 * 82.88957 * 12 11 10 14 14 C 1.50702 * 110.86434 * 206.07491 * 12 11 10 15 15 H 1.07996 * 119.99830 * 113.64129 * 14 12 11 16 16 C 1.37878 * 119.99820 * 293.63826 * 14 12 11 17 17 N 1.31516 * 120.00086 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99666 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47353 * 59.99913 * 18 16 14 20 20 H 1.48497 * 109.47029 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47124 * 299.99867 * 18 16 14 22 22 C 1.47023 * 125.64546 * 354.51409 * 9 7 2 23 23 H 1.09006 * 109.47268 * 302.85685 * 1 2 3 24 24 H 1.09000 * 109.47187 * 62.85611 * 1 2 3 25 25 H 1.09000 * 109.47102 * 182.85676 * 1 2 3 26 26 H 1.08997 * 109.47396 * 163.34086 * 3 2 1 27 27 H 1.09005 * 109.46715 * 283.34338 * 3 2 1 28 28 H 1.08995 * 109.47007 * 43.33782 * 3 2 1 29 29 H 0.96993 * 119.99680 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99533 * 179.97438 * 5 4 2 31 31 H 1.09004 * 110.36441 * 274.73824 * 10 9 7 32 32 H 1.08994 * 110.36120 * 36.94198 * 10 9 7 33 33 H 1.08996 * 111.00966 * 155.14049 * 11 10 9 34 34 H 1.09007 * 111.00434 * 278.98858 * 11 10 9 35 35 H 0.96698 * 114.00024 * 66.45375 * 13 12 11 36 36 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.88377 * 300.45370 * 22 9 7 38 38 H 1.09005 * 109.88426 * 61.61936 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7067 -0.2499 -2.4546 6 8 2.7296 -1.6965 -1.1191 7 6 2.0323 -0.7103 1.2305 8 8 2.6354 -1.7570 1.1227 9 7 1.8114 -0.1826 2.4507 10 6 2.1431 -0.8226 3.7367 11 6 2.2909 0.3489 4.7392 12 6 1.1753 1.3152 4.2514 13 8 -0.0933 0.9343 4.7880 14 6 1.5011 2.7400 4.6185 15 1 1.7098 3.4630 3.8438 16 6 1.5328 3.1206 5.9433 17 7 1.2782 2.2404 6.8866 18 14 1.9374 4.8866 6.3982 19 1 0.9359 5.7971 5.7872 20 1 1.9061 5.0369 7.8752 21 1 3.2913 5.2300 5.8938 22 6 1.1991 1.1267 2.7199 23 1 -0.3634 0.5576 0.8633 24 1 -0.3633 0.4688 -0.9145 25 1 -0.3633 -1.0264 0.0512 26 1 3.0893 1.4569 0.2946 27 1 1.9375 1.8641 -1.0000 28 1 1.4564 2.0342 0.7053 29 1 1.1493 0.5389 -2.5435 30 1 2.0303 -0.7070 -3.2465 31 1 1.3383 -1.4888 4.0476 32 1 3.0803 -1.3732 3.6557 33 1 2.1032 0.0158 5.7599 34 1 3.2738 0.8128 4.6559 35 1 -0.1604 1.0339 5.7475 36 1 1.3008 2.5081 7.8187 37 1 1.7931 1.9157 2.2585 38 1 0.1822 1.1481 2.3279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349470016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:42 Heat of formation + Delta-G solvation = -116.147881 kcal Electronic energy + Delta-G solvation = -22198.127696 eV Core-core repulsion = 18847.816982 eV Total energy + Delta-G solvation = -3350.310714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60520 -38.68893 -36.99605 -35.10601 -34.08298 -33.03082 -32.19716 -29.58055 -28.36115 -27.44497 -25.35197 -24.15898 -22.68346 -20.45666 -19.86680 -18.87535 -17.45370 -17.08442 -16.54238 -15.60114 -15.32903 -15.02581 -14.99195 -14.53078 -14.15713 -13.90662 -13.62471 -13.10562 -12.93564 -12.77367 -12.41112 -12.13891 -11.95710 -11.65058 -11.36206 -11.30081 -11.22108 -11.20534 -10.86819 -10.58207 -10.48834 -10.12837 -9.77970 -9.62337 -9.46118 -8.94279 -8.69260 -8.23262 -7.92999 -6.34273 -4.42735 2.73215 3.13683 3.17130 3.20815 3.23235 3.25648 3.77181 4.20512 4.58968 4.74064 4.92415 4.97559 5.07629 5.42017 5.54662 5.59166 5.64666 5.69078 5.86565 5.92744 5.97878 6.06852 6.15180 6.30247 6.43802 6.60680 6.78916 6.92836 6.98864 7.28718 7.30860 7.32363 7.67960 7.91738 8.15006 8.34839 8.58389 8.73092 9.25948 9.40053 10.73436 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030634 B = 0.005415 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.810117 B = 5169.460461 C = 5548.304597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.153 4.153 4 C 0.527 3.473 5 N -0.859 5.859 6 O -0.498 6.498 7 C 0.532 3.468 8 O -0.516 6.516 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.137 4.137 12 C 0.248 3.752 13 O -0.588 6.588 14 C -0.538 4.538 15 H 0.064 0.936 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.903 3.097 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.103 3.897 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.398 0.602 30 H 0.400 0.600 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.387 0.613 36 H 0.270 0.730 37 H 0.079 0.921 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 1.058 -11.891 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.210 4.210 4 C 0.310 3.690 5 N -0.425 5.425 6 O -0.369 6.369 7 C 0.318 3.682 8 O -0.390 6.390 9 N -0.342 5.342 10 C -0.016 4.016 11 C -0.176 4.176 12 C 0.208 3.792 13 O -0.398 6.398 14 C -0.576 4.576 15 H 0.082 0.918 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.730 3.270 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.019 4.019 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.226 0.774 30 H 0.231 0.769 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.239 0.761 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.690 -0.350 -12.157 12.279 hybrid contribution 0.170 1.372 0.559 1.491 sum -1.520 1.022 -11.598 11.742 Atomic orbital electron populations 1.21942 0.90574 1.03612 1.03931 1.20791 0.98866 0.97724 0.93203 1.22192 1.02954 0.92374 1.03505 1.19971 0.80220 0.84377 0.84476 1.43823 1.56865 1.34100 1.07741 1.90873 1.35375 1.24672 1.85967 1.19406 0.80450 0.85401 0.82953 1.90787 1.39960 1.22930 1.85362 1.48507 1.60577 1.20137 1.04979 1.22330 0.99591 0.96786 0.82907 1.23367 1.01096 0.94988 0.98155 1.19486 0.81274 0.92174 0.86305 1.86072 1.35474 1.89455 1.28807 1.21476 1.48773 0.94785 0.92605 0.91790 1.24988 0.93690 0.98076 0.96197 1.69565 1.48930 1.34246 1.00761 0.86473 0.79061 0.84038 0.77390 1.19992 1.21090 1.20066 1.22592 0.96961 0.83452 0.98886 0.89625 0.91269 0.91717 0.91392 0.91537 0.88989 0.77354 0.76925 0.92238 0.91943 0.89738 0.91590 0.76084 0.91957 0.90263 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.21 37.16 0.31 -1.43 16 2 C -0.10 -1.46 0.59 -156.82 -0.09 -1.55 16 3 C -0.15 -1.87 7.52 37.16 0.28 -1.59 16 4 C 0.53 7.96 6.74 -10.99 -0.07 7.89 16 5 N -0.86 -7.99 8.50 31.22 0.27 -7.72 16 6 O -0.50 -10.22 15.04 -18.92 -0.28 -10.50 16 7 C 0.53 10.50 6.50 -10.99 -0.07 10.43 16 8 O -0.52 -12.25 14.44 -18.92 -0.27 -12.52 16 9 N -0.61 -11.99 3.32 -170.52 -0.57 -12.56 16 10 C 0.11 2.17 6.92 -2.53 -0.02 2.15 16 11 C -0.14 -3.01 5.70 -24.43 -0.14 -3.15 16 12 C 0.25 5.64 0.86 -89.78 -0.08 5.56 16 13 O -0.59 -14.12 13.09 -35.23 -0.46 -14.59 16 14 C -0.54 -13.14 8.22 -34.44 -0.28 -13.42 16 15 H 0.06 1.51 7.53 -52.49 -0.40 1.12 16 16 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 17 N -0.90 -22.39 10.71 55.43 0.59 -21.80 16 18 Si 0.90 19.33 29.54 -169.99 -5.02 14.31 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 C 0.10 1.99 4.38 -3.06 -0.01 1.98 16 23 H 0.09 1.09 5.31 -51.93 -0.28 0.82 16 24 H 0.07 0.58 7.48 -51.93 -0.39 0.19 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 27 H 0.07 0.58 7.19 -51.93 -0.37 0.21 16 28 H 0.09 1.12 5.03 -51.93 -0.26 0.86 16 29 H 0.40 2.42 7.55 -40.82 -0.31 2.11 16 30 H 0.40 3.18 8.93 -40.82 -0.36 2.82 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.27 7.98 -51.93 -0.41 0.85 16 33 H 0.08 1.93 7.79 -51.93 -0.40 1.53 16 34 H 0.07 1.48 8.05 -51.93 -0.42 1.06 16 35 H 0.39 9.54 6.98 45.56 0.32 9.86 16 36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.08 1.43 5.19 -51.93 -0.27 1.16 16 38 H 0.07 1.20 5.62 -51.93 -0.29 0.90 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -31.79 300.13 -5.75 -37.53 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -4.24 Total: 14.74 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.28 Total: 8.59 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.29 Total: -42.08 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -1.02 Total: -37.61 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.79 -5.75 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349470016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.614 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds