Wall clock time and date at job start Mon Mar 30 2020 01:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 C 1.50696 * 109.47117 * 240.00010 * 2 1 3 5 5 N 1.34782 * 120.00054 * 59.99764 * 4 2 1 6 6 O 1.21283 * 119.99946 * 239.99838 * 4 2 1 7 7 C 1.50695 * 109.47073 * 119.99773 * 2 1 3 8 8 O 1.21282 * 120.00054 * 113.88866 * 7 2 1 9 9 N 1.34773 * 120.00510 * 293.88445 * 7 2 1 10 10 C 1.47428 * 125.65418 * 174.48467 * 9 7 2 11 11 C 1.54900 * 104.93038 * 155.84245 * 10 9 7 12 12 C 1.55441 * 101.45556 * 37.00257 * 11 10 9 13 13 O 1.42906 * 110.70704 * 82.88957 * 12 11 10 14 14 C 1.50702 * 110.86434 * 206.07491 * 12 11 10 15 15 H 1.07996 * 119.99830 * 113.64129 * 14 12 11 16 16 C 1.37878 * 119.99820 * 293.63826 * 14 12 11 17 17 N 1.31516 * 120.00086 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99666 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47353 * 59.99913 * 18 16 14 20 20 H 1.48497 * 109.47029 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47124 * 299.99867 * 18 16 14 22 22 C 1.47023 * 125.64546 * 354.51409 * 9 7 2 23 23 H 1.09006 * 109.47268 * 302.85685 * 1 2 3 24 24 H 1.09000 * 109.47187 * 62.85611 * 1 2 3 25 25 H 1.09000 * 109.47102 * 182.85676 * 1 2 3 26 26 H 1.08997 * 109.47396 * 163.34086 * 3 2 1 27 27 H 1.09005 * 109.46715 * 283.34338 * 3 2 1 28 28 H 1.08995 * 109.47007 * 43.33782 * 3 2 1 29 29 H 0.96993 * 119.99680 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99533 * 179.97438 * 5 4 2 31 31 H 1.09004 * 110.36441 * 274.73824 * 10 9 7 32 32 H 1.08994 * 110.36120 * 36.94198 * 10 9 7 33 33 H 1.08996 * 111.00966 * 155.14049 * 11 10 9 34 34 H 1.09007 * 111.00434 * 278.98858 * 11 10 9 35 35 H 0.96698 * 114.00024 * 66.45375 * 13 12 11 36 36 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.88377 * 300.45370 * 22 9 7 38 38 H 1.09005 * 109.88426 * 61.61936 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7067 -0.2499 -2.4546 6 8 2.7296 -1.6965 -1.1191 7 6 2.0323 -0.7103 1.2305 8 8 2.6354 -1.7570 1.1227 9 7 1.8114 -0.1826 2.4507 10 6 2.1431 -0.8226 3.7367 11 6 2.2909 0.3489 4.7392 12 6 1.1753 1.3152 4.2514 13 8 -0.0933 0.9343 4.7880 14 6 1.5011 2.7400 4.6185 15 1 1.7098 3.4630 3.8438 16 6 1.5328 3.1206 5.9433 17 7 1.2782 2.2404 6.8866 18 14 1.9374 4.8866 6.3982 19 1 0.9359 5.7971 5.7872 20 1 1.9061 5.0369 7.8752 21 1 3.2913 5.2300 5.8938 22 6 1.1991 1.1267 2.7199 23 1 -0.3634 0.5576 0.8633 24 1 -0.3633 0.4688 -0.9145 25 1 -0.3633 -1.0264 0.0512 26 1 3.0893 1.4569 0.2946 27 1 1.9375 1.8641 -1.0000 28 1 1.4564 2.0342 0.7053 29 1 1.1493 0.5389 -2.5435 30 1 2.0303 -0.7070 -3.2465 31 1 1.3383 -1.4888 4.0476 32 1 3.0803 -1.3732 3.6557 33 1 2.1032 0.0158 5.7599 34 1 3.2738 0.8128 4.6559 35 1 -0.1604 1.0339 5.7475 36 1 1.3008 2.5081 7.8187 37 1 1.7931 1.9157 2.2585 38 1 0.1822 1.1481 2.3279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349470016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:41 Heat of formation + Delta-G solvation = -141.873709 kcal Electronic energy + Delta-G solvation = -22199.243251 eV Core-core repulsion = 18847.816982 eV Total energy + Delta-G solvation = -3351.426269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95903 -40.14400 -38.65220 -36.47441 -35.71099 -34.08965 -34.06375 -31.27260 -30.02870 -28.42972 -27.05634 -25.47598 -24.15170 -21.82615 -21.63221 -20.20179 -19.10471 -18.37518 -17.85853 -16.99051 -16.92589 -16.76138 -16.33862 -15.88187 -15.84354 -15.16654 -15.02059 -14.78044 -14.23471 -14.10436 -13.84006 -13.40116 -13.38378 -13.23204 -13.05152 -12.86145 -12.68239 -12.54942 -12.34855 -12.27477 -12.18658 -11.91844 -11.20717 -11.06936 -10.61348 -10.60950 -10.35730 -10.08452 -9.55143 -8.19766 -6.34196 1.48796 1.50547 1.53358 1.56842 1.69884 1.87775 2.42912 2.61140 3.06214 3.30264 3.72234 3.85646 3.90648 3.97406 4.17512 4.22515 4.33269 4.47356 4.58311 4.63832 4.68506 4.76367 4.80988 4.91851 5.13908 5.20147 5.25420 5.31554 5.46079 5.50911 5.81235 5.94384 6.07328 6.45036 6.58886 6.72704 7.15195 7.36833 7.41859 7.47541 8.86508 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030634 B = 0.005415 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.810117 B = 5169.460461 C = 5548.304597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.150 4.150 4 C 0.526 3.474 5 N -0.826 5.826 6 O -0.562 6.562 7 C 0.522 3.478 8 O -0.562 6.562 9 N -0.608 5.608 10 C 0.109 3.891 11 C -0.128 4.128 12 C 0.233 3.767 13 O -0.593 6.593 14 C -0.554 4.554 15 H 0.070 0.930 16 C 0.032 3.968 17 N -0.915 5.915 18 Si 0.960 3.040 19 H -0.269 1.269 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.112 3.888 23 H 0.081 0.919 24 H 0.116 0.884 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.419 0.581 30 H 0.411 0.589 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.381 0.619 36 H 0.270 0.730 37 H 0.097 0.903 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 3.163 -13.957 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.207 4.207 4 C 0.309 3.691 5 N -0.393 5.393 6 O -0.439 6.439 7 C 0.311 3.689 8 O -0.440 6.440 9 N -0.342 5.342 10 C -0.014 4.014 11 C -0.167 4.167 12 C 0.193 3.807 13 O -0.403 6.403 14 C -0.592 4.592 15 H 0.088 0.912 16 C -0.169 4.169 17 N -0.555 5.555 18 Si 0.786 3.214 19 H -0.194 1.194 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.009 4.009 23 H 0.099 0.901 24 H 0.135 0.865 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.251 0.749 30 H 0.244 0.756 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.232 0.768 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.645 1.815 -14.279 14.634 hybrid contribution 0.439 0.706 1.189 1.451 sum -2.206 2.521 -13.089 13.511 Atomic orbital electron populations 1.21994 0.88220 1.03273 1.06180 1.20830 1.00502 0.98350 0.90410 1.22230 1.01672 0.90541 1.06283 1.20080 0.79531 0.83605 0.85913 1.43501 1.55507 1.34096 1.06190 1.90860 1.38518 1.27543 1.86933 1.20418 0.79424 0.85060 0.84042 1.90765 1.42022 1.25174 1.86073 1.48573 1.60484 1.20248 1.04871 1.22188 0.99393 0.96292 0.83493 1.23182 1.00480 0.95358 0.97652 1.19725 0.80788 0.91779 0.88433 1.86066 1.36316 1.89554 1.28365 1.21788 1.48800 0.95640 0.93000 0.91157 1.25666 0.93691 1.01256 0.96291 1.69660 1.49413 1.35555 1.00848 0.85570 0.78815 0.80201 0.76780 1.19424 1.21381 1.19885 1.22566 0.98224 0.83543 0.96570 0.90067 0.86544 0.93105 0.93162 0.87194 0.88632 0.74860 0.75647 0.92493 0.92305 0.91298 0.92533 0.76770 0.92074 0.88558 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.21 71.98 0.59 -2.33 16 2 C -0.09 -2.57 0.59 -53.68 -0.03 -2.60 16 3 C -0.15 -3.15 7.52 71.98 0.54 -2.61 16 4 C 0.53 14.89 6.74 87.65 0.59 15.48 16 5 N -0.83 -12.30 8.50 -173.53 -1.48 -13.77 16 6 O -0.56 -23.17 15.04 20.36 0.31 -22.86 16 7 C 0.52 20.54 6.50 87.66 0.57 21.11 16 8 O -0.56 -27.45 14.44 20.37 0.29 -27.15 16 9 N -0.61 -23.85 3.32 -811.80 -2.70 -26.55 16 10 C 0.11 4.57 6.92 86.85 0.60 5.18 16 11 C -0.13 -5.71 5.70 32.08 0.18 -5.53 16 12 C 0.23 10.51 0.86 -10.25 -0.01 10.50 16 13 O -0.59 -28.50 13.09 -148.98 -1.95 -30.45 16 14 C -0.55 -26.56 8.22 25.60 0.21 -26.35 16 15 H 0.07 3.20 7.53 -2.91 -0.02 3.18 16 16 C 0.03 1.53 5.28 84.65 0.45 1.98 16 17 N -0.91 -45.92 10.71 21.45 0.23 -45.69 16 18 Si 0.96 38.93 29.54 68.60 2.03 40.95 16 19 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.29 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 C 0.11 4.18 4.38 86.73 0.38 4.56 16 23 H 0.08 1.81 5.31 -2.38 -0.01 1.79 16 24 H 0.12 1.32 7.48 -2.39 -0.02 1.30 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.26 8.02 -2.39 -0.02 1.24 16 27 H 0.11 1.34 7.19 -2.38 -0.02 1.32 16 28 H 0.10 1.96 5.03 -2.39 -0.01 1.95 16 29 H 0.42 2.83 7.55 -92.71 -0.70 2.13 16 30 H 0.41 5.15 8.93 -92.71 -0.83 4.32 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 2.48 7.98 -2.39 -0.02 2.46 16 33 H 0.07 3.26 7.79 -2.39 -0.02 3.24 16 34 H 0.06 2.58 8.05 -2.38 -0.02 2.57 16 35 H 0.38 19.05 6.98 -74.06 -0.52 18.54 16 36 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 37 H 0.10 3.26 5.19 -2.39 -0.01 3.25 16 38 H 0.08 2.78 5.62 -2.38 -0.01 2.77 16 Total: -1.00 -71.25 300.13 -0.11 -71.36 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.92 Total: 34.78 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 4.07 Total: 19.39 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -3.94 Total: -86.01 kcal Atomic # 8 Polarization: -79.12 SS G_CDS: -1.35 Total: -80.47 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.95 kcal Total: -71.25 -0.11 -71.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349470016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.510 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds