Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21730 * 120.00437 * 0.02562 * 7 6 5 9 9 C 1.46389 * 120.00037 * 179.97438 * 7 6 5 10 10 C 1.33981 * 119.22949 * 0.02562 * 9 7 6 11 11 O 1.35003 * 121.68397 * 180.38904 * 10 9 7 12 12 C 1.43240 * 116.76551 * 342.79983 * 11 10 9 13 13 C 1.53547 * 108.09188 * 45.48722 * 12 11 10 14 14 O 1.36214 * 119.23312 * 179.73128 * 9 7 6 15 15 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 16 16 C 1.36931 * 119.99788 * 274.99780 * 15 2 1 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 2 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 2 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 25 25 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 26 26 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 28 28 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 29 29 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 30 30 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 31 31 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 32 32 H 1.07996 * 119.15321 * 0.36955 * 10 9 7 33 33 H 1.09001 * 109.73561 * 165.13360 * 12 11 10 34 34 H 1.09001 * 109.74130 * 285.83690 * 12 11 10 35 35 H 1.09000 * 109.75312 * 61.46803 * 13 12 11 36 36 H 1.08994 * 109.75732 * 182.21629 * 13 12 11 37 37 H 0.97000 * 119.99792 * 94.99575 * 15 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1613 -0.7979 -2.0212 9 6 5.8620 -2.0291 -3.9708 10 6 4.9819 -2.6200 -4.7903 11 8 5.3779 -3.2764 -5.9016 12 6 6.7021 -3.0036 -6.3745 13 6 7.6539 -3.0314 -5.1699 14 8 7.1996 -2.0505 -4.2271 15 7 2.0183 -0.6906 1.1963 16 6 2.1491 -0.0075 2.3757 17 1 1.8919 1.0404 2.4243 18 6 2.6062 -0.6633 3.5106 19 7 2.9191 -1.9403 3.4515 20 14 2.7773 0.2668 5.1216 21 1 1.4532 0.8035 5.5263 22 1 3.2816 -0.6527 6.1728 23 1 3.7337 1.3892 4.9460 24 1 -0.3633 0.5139 0.8898 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7516 -1.7716 -1.2055 28 1 1.6055 -0.2618 -2.1369 29 1 3.8533 0.4368 -1.3573 30 1 3.9994 -1.0730 -0.4258 31 1 3.4258 -1.7352 -3.1109 32 1 3.9290 -2.5700 -4.5557 33 1 6.9993 -3.7646 -7.0961 34 1 6.7303 -2.0199 -6.8433 35 1 7.6409 -4.0209 -4.7129 36 1 8.6656 -2.7878 -5.4940 37 1 2.2489 -1.6318 1.1527 38 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480747990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = -80.976769 kcal Electronic energy + Delta-G solvation = -20494.248791 eV Core-core repulsion = 17145.463211 eV Total energy + Delta-G solvation = -3348.785580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28333 -39.26837 -37.25299 -36.48792 -34.47797 -32.67106 -31.96218 -29.79989 -28.73116 -27.74492 -25.61495 -23.90314 -22.90488 -21.64104 -20.10192 -19.45777 -18.53346 -18.46690 -17.19435 -16.60089 -15.80136 -15.36361 -15.28561 -15.07897 -14.68543 -14.42813 -14.35169 -13.86634 -13.48470 -13.44470 -12.99747 -12.48601 -12.44291 -12.03197 -11.53753 -11.33221 -11.08016 -10.95593 -10.88092 -10.71451 -10.61845 -10.28539 -10.01989 -9.74843 -9.60515 -8.95345 -8.85223 -8.40583 -6.92636 -5.71872 -3.00686 1.16935 2.52548 2.85908 3.30050 3.48523 3.53157 3.53796 3.67732 3.97856 4.48322 4.57190 4.60113 4.63929 4.90232 4.98161 5.16131 5.25565 5.39829 5.57513 5.60267 5.68775 5.88551 6.06847 6.18450 6.33561 6.39593 6.43697 6.47671 6.65364 6.71116 6.87636 7.04734 7.07672 7.57542 7.74579 8.28969 8.46424 9.57793 10.14152 10.48686 11.50691 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.003612 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.384877 B = 7749.474107 C = 8417.808862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.124 3.876 6 N -0.720 5.720 7 C 0.568 3.432 8 O -0.516 6.516 9 C -0.061 4.061 10 C -0.003 4.003 11 O -0.302 6.302 12 C 0.014 3.986 13 C 0.017 3.983 14 O -0.285 6.285 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.286 1.286 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.394 0.606 32 H 0.179 0.821 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.383 0.617 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -2.994 -22.292 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.002 3.998 6 N -0.375 5.375 7 C 0.353 3.647 8 O -0.392 6.392 9 C -0.110 4.110 10 C -0.069 4.069 11 O -0.214 6.214 12 C -0.061 4.061 13 C -0.059 4.059 14 O -0.198 6.198 15 N -0.366 5.366 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.212 1.212 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.229 0.771 32 H 0.196 0.804 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.139 0.861 37 H 0.217 0.783 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.999 -2.485 -21.608 22.115 hybrid contribution -0.064 -0.194 0.533 0.570 sum 3.934 -2.679 -21.076 21.606 Atomic orbital electron populations 1.22425 0.99105 1.00840 0.99982 1.20149 0.91893 0.95612 0.85952 0.93210 1.22080 0.93650 1.01945 0.99507 1.21533 0.94493 0.97276 0.86541 1.45947 1.06003 1.57488 1.28022 1.17112 0.82848 0.80665 0.84027 1.90892 1.54966 1.44687 1.48696 1.20562 0.84372 1.08240 0.97797 1.23108 0.98735 0.98306 0.86786 1.86090 1.32102 1.62928 1.40327 1.23715 0.81726 1.03981 0.96700 1.23703 0.99353 0.93282 0.89571 1.86494 1.18788 1.54179 1.60382 1.42450 1.78117 1.10654 1.05363 1.19175 1.36798 0.93793 0.87279 0.91248 1.24723 1.02141 0.95935 0.98022 1.69643 1.50902 1.08637 1.28909 0.86290 0.77697 0.78669 0.83674 1.21379 1.21763 1.21227 0.92703 0.94566 0.93516 0.91472 0.91795 0.91423 0.89356 0.77138 0.80405 0.86132 0.90100 0.90297 0.86055 0.78271 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.29 2.89 -67.93 -0.20 3.10 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -1.97 4.87 -26.73 -0.13 -2.10 16 5 C 0.12 2.04 5.56 -4.04 -0.02 2.02 16 6 N -0.72 -9.82 5.49 -61.71 -0.34 -10.16 16 7 C 0.57 9.30 7.73 -12.98 -0.10 9.20 16 8 O -0.52 -11.09 16.92 -10.05 -0.17 -11.26 16 9 C -0.06 -0.81 6.61 -37.80 -0.25 -1.06 16 10 C 0.00 -0.03 10.58 29.24 0.31 0.28 16 11 O -0.30 -2.83 10.47 -30.83 -0.32 -3.15 16 12 C 0.01 0.09 7.29 37.44 0.27 0.37 16 13 C 0.02 0.14 7.32 37.44 0.27 0.41 16 14 O -0.28 -3.92 10.29 -45.75 -0.47 -4.39 16 15 N -0.72 -17.69 4.57 -53.42 -0.24 -17.93 16 16 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 20 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.83 7.75 -51.93 -0.40 1.43 16 31 H 0.39 3.79 6.31 -40.82 -0.26 3.54 16 32 H 0.18 1.26 6.08 -52.49 -0.32 0.94 16 33 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -35.55 323.00 -6.20 -41.75 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.49 Total: 7.68 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 0.26 Total: 2.54 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.14 Total: -55.76 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.96 Total: -18.80 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.55 -6.20 -41.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480747990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.222 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds