Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21730 * 120.00437 * 0.02562 * 7 6 5 9 9 C 1.46389 * 120.00037 * 179.97438 * 7 6 5 10 10 C 1.33981 * 119.22949 * 0.02562 * 9 7 6 11 11 O 1.35003 * 121.68397 * 180.38904 * 10 9 7 12 12 C 1.43240 * 116.76551 * 342.79983 * 11 10 9 13 13 C 1.53547 * 108.09188 * 45.48722 * 12 11 10 14 14 O 1.36214 * 119.23312 * 179.73128 * 9 7 6 15 15 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 16 16 C 1.36931 * 119.99788 * 274.99780 * 15 2 1 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 2 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 2 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 25 25 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 26 26 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 28 28 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 29 29 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 30 30 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 31 31 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 32 32 H 1.07996 * 119.15321 * 0.36955 * 10 9 7 33 33 H 1.09001 * 109.73561 * 165.13360 * 12 11 10 34 34 H 1.09001 * 109.74130 * 285.83690 * 12 11 10 35 35 H 1.09000 * 109.75312 * 61.46803 * 13 12 11 36 36 H 1.08994 * 109.75732 * 182.21629 * 13 12 11 37 37 H 0.97000 * 119.99792 * 94.99575 * 15 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1613 -0.7979 -2.0212 9 6 5.8620 -2.0291 -3.9708 10 6 4.9819 -2.6200 -4.7903 11 8 5.3779 -3.2764 -5.9016 12 6 6.7021 -3.0036 -6.3745 13 6 7.6539 -3.0314 -5.1699 14 8 7.1996 -2.0505 -4.2271 15 7 2.0183 -0.6906 1.1963 16 6 2.1491 -0.0075 2.3757 17 1 1.8919 1.0404 2.4243 18 6 2.6062 -0.6633 3.5106 19 7 2.9191 -1.9403 3.4515 20 14 2.7773 0.2668 5.1216 21 1 1.4532 0.8035 5.5263 22 1 3.2816 -0.6527 6.1728 23 1 3.7337 1.3892 4.9460 24 1 -0.3633 0.5139 0.8898 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7516 -1.7716 -1.2055 28 1 1.6055 -0.2618 -2.1369 29 1 3.8533 0.4368 -1.3573 30 1 3.9994 -1.0730 -0.4258 31 1 3.4258 -1.7352 -3.1109 32 1 3.9290 -2.5700 -4.5557 33 1 6.9993 -3.7646 -7.0961 34 1 6.7303 -2.0199 -6.8433 35 1 7.6409 -4.0209 -4.7129 36 1 8.6656 -2.7878 -5.4940 37 1 2.2489 -1.6318 1.1527 38 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480747990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = -108.393973 kcal Electronic energy + Delta-G solvation = -20495.437690 eV Core-core repulsion = 17145.463211 eV Total energy + Delta-G solvation = -3349.974479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.12047 -40.47022 -38.25221 -37.87477 -35.95671 -34.29748 -33.13486 -31.11539 -30.16070 -28.94958 -26.41125 -25.81475 -24.26175 -22.77355 -21.50425 -20.47501 -19.55291 -19.31459 -19.15049 -17.42845 -17.07095 -16.71450 -16.52657 -16.17733 -15.81369 -15.61316 -15.34319 -15.28710 -15.18314 -14.50419 -14.35294 -14.08073 -13.54619 -13.22825 -13.17509 -12.77988 -12.60816 -12.31826 -12.24941 -12.13007 -11.98711 -11.74044 -11.59754 -11.55044 -11.02596 -10.90508 -10.25517 -9.27883 -8.95933 -7.91139 -5.17620 0.22284 1.46584 1.49890 1.55143 1.56472 2.08266 2.21774 2.58536 2.74265 3.39126 3.43092 3.69423 3.91511 3.95513 3.97933 4.01664 4.21580 4.27027 4.38713 4.43558 4.62823 4.69010 4.78712 4.81478 4.91695 5.04602 5.11624 5.21622 5.35952 5.42848 5.55808 5.64874 5.75251 6.18699 6.31998 6.55237 7.13344 7.38037 8.16738 8.37428 9.32254 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.003612 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.384877 B = 7749.474107 C = 8417.808862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.043 0.957 4 C -0.116 4.116 5 C 0.133 3.867 6 N -0.700 5.700 7 C 0.563 3.437 8 O -0.585 6.585 9 C -0.103 4.103 10 C 0.045 3.955 11 O -0.304 6.304 12 C 0.013 3.987 13 C 0.008 3.992 14 O -0.325 6.325 15 N -0.736 5.736 16 C -0.234 4.234 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.966 3.034 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.283 1.283 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.417 0.583 32 H 0.210 0.790 33 H 0.158 0.842 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.146 0.854 37 H 0.372 0.628 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -3.150 -25.240 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.355 5.355 7 C 0.352 3.648 8 O -0.466 6.466 9 C -0.151 4.151 10 C -0.022 4.022 11 O -0.215 6.215 12 C -0.061 4.061 13 C -0.067 4.067 14 O -0.240 6.240 15 N -0.377 5.377 16 C -0.366 4.366 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.796 3.204 21 H -0.202 1.202 22 H -0.224 1.224 23 H -0.209 1.209 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.129 0.871 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.256 0.744 32 H 0.227 0.773 33 H 0.176 0.824 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.163 0.837 37 H 0.204 0.796 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.484 -2.634 -24.643 24.907 hybrid contribution 0.383 -0.171 1.241 1.310 sum 2.867 -2.805 -23.401 23.743 Atomic orbital electron populations 1.22257 0.96985 1.01119 1.00898 1.20472 0.93236 0.95231 0.85603 0.93925 1.21944 0.91834 1.02467 0.99176 1.21198 0.95703 0.96229 0.85886 1.45638 1.05823 1.56755 1.27253 1.17713 0.82916 0.79798 0.84379 1.90845 1.56670 1.47919 1.51201 1.20144 0.85188 1.11555 0.98261 1.23541 0.99339 0.93992 0.85321 1.86107 1.33678 1.62301 1.39453 1.24043 0.79791 1.05893 0.96420 1.24049 1.01003 0.92350 0.89264 1.86414 1.19172 1.56122 1.62312 1.42663 1.78419 1.10266 1.06348 1.19573 1.34554 0.94066 0.88436 0.90812 1.25485 1.03368 0.96844 1.01322 1.69799 1.53003 1.10131 1.29187 0.85310 0.77920 0.77301 0.79876 1.20216 1.22440 1.20906 0.94988 0.90429 0.93529 0.90537 0.87112 0.92689 0.94363 0.74417 0.77344 0.82415 0.89267 0.90299 0.83652 0.79610 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.49 71.98 0.68 -4.19 16 2 C 0.16 5.96 2.89 44.99 0.13 6.09 16 3 H 0.04 1.62 8.08 -2.39 -0.02 1.61 16 4 C -0.12 -3.17 4.87 30.59 0.15 -3.02 16 5 C 0.13 4.44 5.56 86.38 0.48 4.92 16 6 N -0.70 -18.48 5.49 -467.35 -2.56 -21.05 16 7 C 0.56 18.88 7.73 86.37 0.67 19.55 16 8 O -0.59 -26.82 16.92 10.10 0.17 -26.65 16 9 C -0.10 -2.70 6.61 23.42 0.15 -2.54 16 10 C 0.05 0.78 10.58 66.85 0.71 1.48 16 11 O -0.30 -4.57 10.47 -69.25 -0.73 -5.29 16 12 C 0.01 0.13 7.29 72.17 0.53 0.66 16 13 C 0.01 0.12 7.32 72.17 0.53 0.65 16 14 O -0.33 -9.00 10.29 -71.77 -0.74 -9.74 16 15 N -0.74 -36.46 4.57 -322.93 -1.48 -37.94 16 16 C -0.23 -13.13 9.93 84.04 0.83 -12.30 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 19 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 20 Si 0.97 47.70 29.55 68.60 2.03 49.73 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 23 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 28 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.67 7.75 -2.39 -0.02 1.65 16 31 H 0.42 6.77 6.31 -92.71 -0.59 6.19 16 32 H 0.21 2.03 6.08 -2.91 -0.02 2.01 16 33 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.37 19.91 7.80 -92.71 -0.72 19.18 16 38 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -82.77 323.00 2.07 -80.70 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.23 Total: 23.71 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.33 Total: 7.17 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -3.76 Total: -119.62 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.29 Total: -41.69 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -82.77 2.07 -80.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480747990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.698 kcal (2) G-P(sol) polarization free energy of solvation -82.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds