Wall clock time and date at job start Mon Mar 30 2020 02:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21741 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.46372 * 120.00315 * 179.97438 * 16 15 14 19 19 C 1.33975 * 119.23277 * 359.72558 * 18 16 15 20 20 O 1.34999 * 121.69306 * 180.12631 * 19 18 16 21 21 C 1.43246 * 116.82585 * 343.31515 * 20 19 18 22 22 C 1.53547 * 108.08699 * 45.25525 * 21 20 19 23 23 O 1.36217 * 119.23790 * 180.02562 * 18 16 15 24 24 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 25 25 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 27 27 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 28 28 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 32 32 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 33 33 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 34 34 H 1.08008 * 119.15186 * 0.39624 * 19 18 16 35 35 H 1.09000 * 109.73648 * 285.60438 * 21 20 19 36 36 H 1.09003 * 109.73577 * 164.90563 * 21 20 19 37 37 H 1.08997 * 109.75413 * 182.21351 * 22 21 20 38 38 H 1.09000 * 109.79475 * 61.49701 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6295 -1.4465 -3.7796 18 6 1.6088 0.3427 -4.8581 19 6 0.9074 1.4753 -4.7154 20 8 0.5219 2.2097 -5.7805 21 6 1.1874 1.9474 -7.0216 22 6 1.2637 0.4253 -7.2092 23 8 1.9642 -0.1250 -6.0870 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.1264 -0.7995 1.2056 28 1 1.6054 -1.7198 1.2950 29 1 1.1483 0.8591 2.3518 30 1 0.6807 1.9070 5.4838 31 1 3.1264 -0.7994 -1.2056 32 1 1.6054 -1.7198 -1.2953 33 1 1.1483 0.8592 -2.3518 34 1 0.6474 1.8116 -3.7225 35 1 2.1934 2.3661 -6.9955 36 1 0.6243 2.3918 -7.8423 37 1 1.8012 0.1940 -8.1288 38 1 0.2578 0.0082 -7.2558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482077443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:14 Heat of formation + Delta-G solvation = -107.899268 kcal Electronic energy + Delta-G solvation = -20320.889556 eV Core-core repulsion = 16970.936529 eV Total energy + Delta-G solvation = -3349.953027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.13125 -40.54411 -38.35949 -37.86376 -36.02359 -34.45590 -33.01068 -31.77510 -29.92231 -27.70536 -27.02184 -26.23151 -24.40462 -22.77380 -21.50726 -20.48456 -19.63104 -19.33106 -18.92317 -17.44170 -17.07089 -16.88369 -16.46100 -16.09189 -15.82948 -15.69099 -15.44102 -15.27333 -15.08114 -14.89953 -14.30289 -14.11937 -13.61838 -13.55110 -13.17101 -12.94683 -12.76367 -12.20878 -12.18567 -11.99780 -11.98621 -11.75037 -11.65875 -11.62385 -11.04354 -10.91868 -10.26665 -9.27327 -8.97639 -7.94174 -5.22129 0.21450 1.48666 1.51380 1.55031 1.57735 2.05995 2.22423 2.56962 2.73411 3.39084 3.39549 3.67777 3.71791 3.93640 3.97542 3.98165 4.08850 4.25569 4.35782 4.44086 4.55467 4.63358 4.71173 4.74965 4.85392 4.95804 5.05690 5.14446 5.24661 5.38954 5.49374 5.51580 5.75496 6.17884 6.28861 6.50837 7.08290 7.35740 8.11089 8.35484 9.29087 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047350 B = 0.002927 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.199617 B = 9564.321252 C = 9981.113560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.083 0.917 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.139 3.861 15 N -0.702 5.702 16 C 0.572 3.428 17 O -0.578 6.578 18 C -0.101 4.101 19 C 0.040 3.960 20 O -0.306 6.306 21 C 0.011 3.989 22 C 0.011 3.989 23 O -0.322 6.322 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.377 0.623 30 H 0.252 0.748 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.414 0.586 34 H 0.205 0.795 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 3.176 -25.649 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.102 0.898 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.015 3.985 15 N -0.357 5.357 16 C 0.360 3.640 17 O -0.459 6.459 18 C -0.150 4.150 19 C -0.027 4.027 20 O -0.218 6.218 21 C -0.064 4.064 22 C -0.064 4.064 23 O -0.237 6.237 24 H 0.097 0.903 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.210 0.790 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.253 0.747 34 H 0.221 0.779 35 H 0.105 0.895 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.005 2.340 -25.674 25.859 hybrid contribution -0.081 0.227 1.066 1.093 sum -2.086 2.567 -24.609 24.830 Atomic orbital electron populations 1.21760 0.93738 1.02088 1.01951 1.21349 0.97281 1.00266 0.92451 0.89830 1.20721 0.96618 0.94154 0.85599 1.42493 1.66940 1.27752 1.01264 1.19592 1.27909 1.05363 0.85080 0.90913 1.25524 1.01674 0.97929 1.01441 1.69791 1.44940 1.17905 1.29178 0.85236 0.77865 0.77175 0.79627 1.20526 1.22028 1.20521 1.21220 0.99941 0.95096 0.82198 1.45658 1.57462 1.28260 1.04306 1.17487 0.79243 0.84207 0.83045 1.90825 1.41792 1.26156 1.87126 1.20149 1.11105 0.96991 0.86738 1.23532 0.96653 0.88913 0.93632 1.86108 1.60006 1.57838 1.17828 1.24058 1.00438 0.96209 0.85673 1.24007 0.99359 0.94115 0.88916 1.86360 1.60734 1.64375 1.12212 0.90350 0.92936 0.93679 0.96160 0.96050 0.78994 0.93944 0.91683 0.91395 0.74732 0.77909 0.89513 0.82562 0.83592 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.94 71.98 0.64 -3.08 16 2 C -0.09 -2.71 2.46 -10.79 -0.03 -2.74 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.06 5.65 86.38 0.49 6.55 16 5 N -0.74 -36.89 5.33 -343.46 -1.83 -38.72 16 6 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 7 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 8 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 9 N -0.97 -58.44 13.06 21.65 0.28 -58.16 16 10 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.14 3.66 5.06 86.38 0.44 4.10 16 15 N -0.70 -15.46 5.21 -467.35 -2.44 -17.90 16 16 C 0.57 15.83 7.73 86.36 0.67 16.49 16 17 O -0.58 -21.66 16.92 10.06 0.17 -21.49 16 18 C -0.10 -2.29 6.61 23.42 0.15 -2.13 16 19 C 0.04 0.62 10.58 66.85 0.71 1.33 16 20 O -0.31 -4.34 10.47 -69.21 -0.72 -5.06 16 21 C 0.01 0.09 7.30 72.17 0.53 0.62 16 22 C 0.01 0.13 7.31 72.17 0.53 0.66 16 23 O -0.32 -7.64 10.28 -71.81 -0.74 -8.38 16 24 H 0.08 1.53 7.18 -2.39 -0.02 1.51 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.48 7.18 -2.39 -0.02 1.46 16 27 H 0.02 0.80 8.14 -2.38 -0.02 0.79 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.38 19.57 6.85 -92.71 -0.63 18.94 16 30 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 31 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.41 6.28 5.49 -92.71 -0.51 5.77 16 34 H 0.20 1.92 6.08 -2.91 -0.02 1.90 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.16 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -76.82 319.61 2.12 -74.70 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.06 Total: 21.83 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.43 Total: 5.10 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -3.98 Total: -114.78 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.29 Total: -34.93 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -76.82 2.12 -74.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482077443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.198 kcal (2) G-P(sol) polarization free energy of solvation -76.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds