Wall clock time and date at job start Mon Mar 30 2020 02:20:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09003 * 109.46903 * 2 1
4 4 N 1.46498 * 109.47606 * 120.00080 * 2 1 3
5 5 C 1.34774 * 120.00211 * 275.00118 * 4 2 1
6 6 O 1.21734 * 119.99747 * 359.97438 * 5 4 2
7 7 C 1.46368 * 119.99921 * 179.97438 * 5 4 2
8 8 C 1.33977 * 119.23393 * 359.73149 * 7 5 4
9 9 O 1.35007 * 121.68844 * 180.12526 * 8 7 5
10 10 C 1.43245 * 116.82770 * 343.30668 * 9 8 7
11 11 C 1.53561 * 108.08543 * 45.26088 * 10 9 8
12 12 O 1.36222 * 119.23382 * 179.97438 * 7 5 4
13 13 C 1.53006 * 109.46809 * 240.00581 * 2 1 3
14 14 H 1.09003 * 109.46914 * 299.99413 * 13 2 1
15 15 C 1.52999 * 109.46809 * 180.02562 * 13 2 1
16 16 N 1.46493 * 109.47135 * 59.99552 * 13 2 1
17 17 C 1.36945 * 119.99892 * 204.99848 * 16 13 2
18 18 H 1.08000 * 119.99422 * 359.72792 * 17 16 13
19 19 C 1.38811 * 120.00031 * 179.72716 * 17 16 13
20 20 N 1.31614 * 119.99700 * 179.97438 * 19 17 16
21 21 Si 1.86795 * 120.00072 * 0.02562 * 19 17 16
22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17
23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17
24 24 H 1.48505 * 109.47256 * 330.00020 * 21 19 17
25 25 H 1.09003 * 109.47419 * 59.99597 * 1 2 3
26 26 H 1.09003 * 109.46903 * 180.02562 * 1 2 3
27 27 H 1.09003 * 109.46886 * 299.99387 * 1 2 3
28 28 H 0.97004 * 119.99747 * 94.99469 * 4 2 1
29 29 H 1.07995 * 119.15613 * 0.36319 * 8 7 5
30 30 H 1.08996 * 109.74357 * 285.61433 * 10 9 8
31 31 H 1.09002 * 109.73975 * 164.90301 * 10 9 8
32 32 H 1.08997 * 109.74936 * 182.21688 * 11 10 9
33 33 H 1.08995 * 109.75371 * 61.46878 * 11 10 9
34 34 H 1.08994 * 109.47399 * 59.99551 * 15 13 2
35 35 H 1.09003 * 109.46886 * 180.02562 * 15 13 2
36 36 H 1.09003 * 109.46903 * 299.99419 * 15 13 2
37 37 H 0.97000 * 120.00738 * 24.73313 * 16 13 2
38 38 H 0.97004 * 120.00256 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1472 -0.0183 2.3571
6 8 1.8581 1.1629 2.4117
7 6 2.6347 -0.7085 3.5522
8 6 2.9433 -2.0100 3.4761
9 8 3.3946 -2.6957 4.5479
10 6 3.8773 -1.9231 5.6533
11 6 2.8750 -0.7898 5.9165
12 8 2.7593 -0.0138 4.7173
13 6 2.0399 -0.7212 -1.2494
14 1 1.6766 -1.7489 -1.2494
15 6 3.5699 -0.7217 -1.2491
16 7 1.5515 -0.0305 -2.4454
17 6 1.4207 -0.7136 -3.6251
18 1 1.6818 -1.7604 -3.6747
19 6 0.9525 -0.0606 -4.7570
20 7 0.8273 -0.7171 -5.8909
21 14 0.5016 1.7501 -4.6713
22 1 1.6948 2.5732 -4.9936
23 1 -0.5775 2.0383 -5.6499
24 1 0.0289 2.0783 -3.3023
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8901
28 1 2.2491 -1.6318 1.1525
29 1 2.8317 -2.5228 2.5322
30 1 4.8530 -1.5025 5.4104
31 1 3.9580 -2.5557 6.5373
32 1 3.2364 -0.1599 6.7293
33 1 1.9042 -1.2101 6.1788
34 1 3.9329 -1.2358 -0.3592
35 1 3.9332 -1.2351 -2.1394
36 1 3.9336 0.3058 -1.2488
37 1 1.3171 0.9097 -2.4009
38 1 0.4997 -0.2609 -6.6818
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001485117503.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:20:54
Heat of formation + Delta-G solvation = -72.502571 kcal
Electronic energy + Delta-G solvation = -21057.407169 eV
Core-core repulsion = 17708.989058 eV
Total energy + Delta-G solvation = -3348.418111 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.34951 -39.56580 -37.40970 -36.69171 -34.21524 -32.72772 -31.59485 -30.07478
-28.92436 -28.51778 -25.68198 -23.93954 -23.13486 -21.51913 -20.34822 -19.64181
-18.64450 -18.57018 -17.57776 -16.70354 -15.99737 -15.41068 -15.19629 -14.96265
-14.53668 -14.48471 -14.14636 -14.02471 -13.56383 -13.46578 -12.93798 -12.59882
-12.51912 -12.14960 -11.86338 -11.39125 -11.35643 -11.12832 -10.99347 -10.92185
-10.78729 -10.31619 -9.97274 -9.89592 -9.61267 -9.13735 -8.90603 -8.45568
-7.32788 -5.80082 -3.16748 1.11266 2.45280 2.81672 3.20982 3.37886
3.41667 3.46142 3.60283 3.93099 4.44184 4.51518 4.56481 4.57421
4.84991 4.93525 5.10600 5.11288 5.35627 5.40113 5.54850 5.60935
5.69619 5.98559 6.03970 6.22464 6.26409 6.34500 6.41805 6.49894
6.65450 6.76235 6.90617 7.01389 7.51944 7.93935 8.20435 8.38220
9.15667 9.88268 10.06927 11.37861
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.040361 B = 0.003920 C = 0.003723
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.565813 B = 7141.389722 C = 7518.109974
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.135 3.865
3 H 0.087 0.913
4 N -0.709 5.709
5 C 0.574 3.426
6 O -0.524 6.524
7 C -0.065 4.065
8 C 0.002 3.998
9 O -0.301 6.301
10 C 0.014 3.986
11 C 0.018 3.982
12 O -0.286 6.286
13 C 0.174 3.826
14 H 0.060 0.940
15 C -0.166 4.166
16 N -0.742 5.742
17 C -0.244 4.244
18 H 0.091 0.909
19 C 0.008 3.992
20 N -0.932 5.932
21 Si 0.882 3.118
22 H -0.284 1.284
23 H -0.291 1.291
24 H -0.275 1.275
25 H 0.076 0.924
26 H 0.056 0.944
27 H 0.050 0.950
28 H 0.396 0.604
29 H 0.181 0.819
30 H 0.082 0.918
31 H 0.121 0.879
32 H 0.121 0.879
33 H 0.077 0.923
34 H 0.038 0.962
35 H 0.061 0.939
36 H 0.047 0.953
37 H 0.363 0.637
38 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.290 -3.938 23.777 24.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.031 3.969
3 H 0.105 0.895
4 N -0.363 5.363
5 C 0.360 3.640
6 O -0.400 6.400
7 C -0.114 4.114
8 C -0.064 4.064
9 O -0.213 6.213
10 C -0.062 4.062
11 C -0.058 4.058
12 O -0.199 6.199
13 C 0.063 3.937
14 H 0.078 0.922
15 C -0.226 4.226
16 N -0.385 5.385
17 C -0.374 4.374
18 H 0.109 0.891
19 C -0.189 4.189
20 N -0.580 5.580
21 Si 0.712 3.288
22 H -0.210 1.210
23 H -0.217 1.217
24 H -0.201 1.201
25 H 0.095 0.905
26 H 0.075 0.925
27 H 0.069 0.931
28 H 0.232 0.768
29 H 0.197 0.803
30 H 0.100 0.900
31 H 0.139 0.861
32 H 0.139 0.861
33 H 0.096 0.904
34 H 0.057 0.943
35 H 0.080 0.920
36 H 0.066 0.934
37 H 0.196 0.804
38 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 5.078 -3.248 23.665 24.420
hybrid contribution -0.141 0.790 0.068 0.805
sum 4.937 -2.459 23.732 24.365
Atomic orbital electron populations
1.22090 0.94725 1.02302 1.02296 1.21422 0.94601 0.97688 0.83225
0.89464 1.45873 1.67441 1.13764 1.09235 1.17078 0.78425 0.86557
0.81977 1.90852 1.49532 1.15113 1.84537 1.20501 1.09552 0.92301
0.89053 1.23167 0.99070 0.92092 0.92119 1.86097 1.76123 1.34680
1.24416 1.23732 0.97475 0.95008 0.89952 1.23676 1.00210 0.94834
0.87103 1.86445 1.88836 1.32734 1.11920 1.20363 0.92388 0.95893
0.85014 0.92160 1.22429 0.98430 1.01304 1.00418 1.42645 1.79704
1.09591 1.06602 1.19012 1.37238 0.95734 0.85377 0.89099 1.24644
1.01174 0.97505 0.95529 1.69693 1.52285 1.35670 1.00334 0.86597
0.78239 0.86763 0.77214 1.21032 1.21718 1.20128 0.90505 0.92454
0.93076 0.76781 0.80287 0.90014 0.86102 0.86077 0.90434 0.94276
0.92009 0.93378 0.80402 0.92993
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.53 9.33 37.16 0.35 -2.18 16
2 C 0.13 2.16 2.20 -67.93 -0.15 2.01 16
3 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16
4 N -0.71 -9.29 4.31 -55.21 -0.24 -9.53 16
5 C 0.57 8.62 7.69 -12.99 -0.10 8.52 16
6 O -0.52 -10.11 16.58 -10.05 -0.17 -10.27 16
7 C -0.07 -0.81 6.61 -37.81 -0.25 -1.06 16
8 C 0.00 0.02 10.58 29.23 0.31 0.33 16
9 O -0.30 -2.72 10.47 -30.85 -0.32 -3.04 16
10 C 0.01 0.09 7.30 37.45 0.27 0.36 16
11 C 0.02 0.13 7.31 37.45 0.27 0.41 16
12 O -0.29 -3.65 10.28 -45.78 -0.47 -4.12 16
13 C 0.17 3.09 2.52 -67.93 -0.17 2.92 16
14 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16
15 C -0.17 -2.74 9.34 37.16 0.35 -2.39 16
16 N -0.74 -16.71 4.24 -53.42 -0.23 -16.94 16
17 C -0.24 -6.60 10.41 -15.06 -0.16 -6.75 16
18 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16
19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16
20 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16
21 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16
22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16
23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
24 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16
25 H 0.08 1.38 7.44 -51.93 -0.39 0.99 16
26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16
28 H 0.40 3.96 6.23 -40.82 -0.25 3.70 16
29 H 0.18 1.27 6.08 -52.49 -0.32 0.95 16
30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.04 0.52 7.44 -51.93 -0.39 0.13 16
35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16
36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
37 H 0.36 8.22 5.43 -40.82 -0.22 8.00 16
38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
LS Contribution 316.88 15.07 4.78 4.78
Total: -1.00 -34.66 316.88 -5.32 -39.98
By element:
Atomic # 1 Polarization: 13.03 SS G_CDS: -5.35 Total: 7.68 kcal
Atomic # 6 Polarization: 1.66 SS G_CDS: 0.63 Total: 2.29 kcal
Atomic # 7 Polarization: -54.74 SS G_CDS: 0.31 Total: -54.43 kcal
Atomic # 8 Polarization: -16.47 SS G_CDS: -0.96 Total: -17.43 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -34.66 -5.32 -39.98 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485117503.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.522 kcal
(2) G-P(sol) polarization free energy of solvation -34.664 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds