Wall clock time and date at job start Mon Mar 30 2020 02:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 N 1.46498 * 109.47606 * 120.00080 * 2 1 3 5 5 C 1.34774 * 120.00211 * 275.00118 * 4 2 1 6 6 O 1.21734 * 119.99747 * 359.97438 * 5 4 2 7 7 C 1.46368 * 119.99921 * 179.97438 * 5 4 2 8 8 C 1.33977 * 119.23393 * 359.73149 * 7 5 4 9 9 O 1.35007 * 121.68844 * 180.12526 * 8 7 5 10 10 C 1.43245 * 116.82770 * 343.30668 * 9 8 7 11 11 C 1.53561 * 108.08543 * 45.26088 * 10 9 8 12 12 O 1.36222 * 119.23382 * 179.97438 * 7 5 4 13 13 C 1.53006 * 109.46809 * 240.00581 * 2 1 3 14 14 H 1.09003 * 109.46914 * 299.99413 * 13 2 1 15 15 C 1.52999 * 109.46809 * 180.02562 * 13 2 1 16 16 N 1.46493 * 109.47135 * 59.99552 * 13 2 1 17 17 C 1.36945 * 119.99892 * 204.99848 * 16 13 2 18 18 H 1.08000 * 119.99422 * 359.72792 * 17 16 13 19 19 C 1.38811 * 120.00031 * 179.72716 * 17 16 13 20 20 N 1.31614 * 119.99700 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48505 * 109.47256 * 330.00020 * 21 19 17 25 25 H 1.09003 * 109.47419 * 59.99597 * 1 2 3 26 26 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46886 * 299.99387 * 1 2 3 28 28 H 0.97004 * 119.99747 * 94.99469 * 4 2 1 29 29 H 1.07995 * 119.15613 * 0.36319 * 8 7 5 30 30 H 1.08996 * 109.74357 * 285.61433 * 10 9 8 31 31 H 1.09002 * 109.73975 * 164.90301 * 10 9 8 32 32 H 1.08997 * 109.74936 * 182.21688 * 11 10 9 33 33 H 1.08995 * 109.75371 * 61.46878 * 11 10 9 34 34 H 1.08994 * 109.47399 * 59.99551 * 15 13 2 35 35 H 1.09003 * 109.46886 * 180.02562 * 15 13 2 36 36 H 1.09003 * 109.46903 * 299.99419 * 15 13 2 37 37 H 0.97000 * 120.00738 * 24.73313 * 16 13 2 38 38 H 0.97004 * 120.00256 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8581 1.1629 2.4117 7 6 2.6347 -0.7085 3.5522 8 6 2.9433 -2.0100 3.4761 9 8 3.3946 -2.6957 4.5479 10 6 3.8773 -1.9231 5.6533 11 6 2.8750 -0.7898 5.9165 12 8 2.7593 -0.0138 4.7173 13 6 2.0399 -0.7212 -1.2494 14 1 1.6766 -1.7489 -1.2494 15 6 3.5699 -0.7217 -1.2491 16 7 1.5515 -0.0305 -2.4454 17 6 1.4207 -0.7136 -3.6251 18 1 1.6818 -1.7604 -3.6747 19 6 0.9525 -0.0606 -4.7570 20 7 0.8273 -0.7171 -5.8909 21 14 0.5016 1.7501 -4.6713 22 1 1.6948 2.5732 -4.9936 23 1 -0.5775 2.0383 -5.6499 24 1 0.0289 2.0783 -3.3023 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.2491 -1.6318 1.1525 29 1 2.8317 -2.5228 2.5322 30 1 4.8530 -1.5025 5.4104 31 1 3.9580 -2.5557 6.5373 32 1 3.2364 -0.1599 6.7293 33 1 1.9042 -1.2101 6.1788 34 1 3.9329 -1.2358 -0.3592 35 1 3.9332 -1.2351 -2.1394 36 1 3.9336 0.3058 -1.2488 37 1 1.3171 0.9097 -2.4009 38 1 0.4997 -0.2609 -6.6818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485117503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:54 Heat of formation + Delta-G solvation = -72.502571 kcal Electronic energy + Delta-G solvation = -21057.407169 eV Core-core repulsion = 17708.989058 eV Total energy + Delta-G solvation = -3348.418111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34951 -39.56580 -37.40970 -36.69171 -34.21524 -32.72772 -31.59485 -30.07478 -28.92436 -28.51778 -25.68198 -23.93954 -23.13486 -21.51913 -20.34822 -19.64181 -18.64450 -18.57018 -17.57776 -16.70354 -15.99737 -15.41068 -15.19629 -14.96265 -14.53668 -14.48471 -14.14636 -14.02471 -13.56383 -13.46578 -12.93798 -12.59882 -12.51912 -12.14960 -11.86338 -11.39125 -11.35643 -11.12832 -10.99347 -10.92185 -10.78729 -10.31619 -9.97274 -9.89592 -9.61267 -9.13735 -8.90603 -8.45568 -7.32788 -5.80082 -3.16748 1.11266 2.45280 2.81672 3.20982 3.37886 3.41667 3.46142 3.60283 3.93099 4.44184 4.51518 4.56481 4.57421 4.84991 4.93525 5.10600 5.11288 5.35627 5.40113 5.54850 5.60935 5.69619 5.98559 6.03970 6.22464 6.26409 6.34500 6.41805 6.49894 6.65450 6.76235 6.90617 7.01389 7.51944 7.93935 8.20435 8.38220 9.15667 9.88268 10.06927 11.37861 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040361 B = 0.003920 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.565813 B = 7141.389722 C = 7518.109974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 H 0.087 0.913 4 N -0.709 5.709 5 C 0.574 3.426 6 O -0.524 6.524 7 C -0.065 4.065 8 C 0.002 3.998 9 O -0.301 6.301 10 C 0.014 3.986 11 C 0.018 3.982 12 O -0.286 6.286 13 C 0.174 3.826 14 H 0.060 0.940 15 C -0.166 4.166 16 N -0.742 5.742 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.275 1.275 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.396 0.604 29 H 0.181 0.819 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.363 0.637 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -3.938 23.777 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.031 3.969 3 H 0.105 0.895 4 N -0.363 5.363 5 C 0.360 3.640 6 O -0.400 6.400 7 C -0.114 4.114 8 C -0.064 4.064 9 O -0.213 6.213 10 C -0.062 4.062 11 C -0.058 4.058 12 O -0.199 6.199 13 C 0.063 3.937 14 H 0.078 0.922 15 C -0.226 4.226 16 N -0.385 5.385 17 C -0.374 4.374 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.580 5.580 21 Si 0.712 3.288 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.201 1.201 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.232 0.768 29 H 0.197 0.803 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.196 0.804 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.078 -3.248 23.665 24.420 hybrid contribution -0.141 0.790 0.068 0.805 sum 4.937 -2.459 23.732 24.365 Atomic orbital electron populations 1.22090 0.94725 1.02302 1.02296 1.21422 0.94601 0.97688 0.83225 0.89464 1.45873 1.67441 1.13764 1.09235 1.17078 0.78425 0.86557 0.81977 1.90852 1.49532 1.15113 1.84537 1.20501 1.09552 0.92301 0.89053 1.23167 0.99070 0.92092 0.92119 1.86097 1.76123 1.34680 1.24416 1.23732 0.97475 0.95008 0.89952 1.23676 1.00210 0.94834 0.87103 1.86445 1.88836 1.32734 1.11920 1.20363 0.92388 0.95893 0.85014 0.92160 1.22429 0.98430 1.01304 1.00418 1.42645 1.79704 1.09591 1.06602 1.19012 1.37238 0.95734 0.85377 0.89099 1.24644 1.01174 0.97505 0.95529 1.69693 1.52285 1.35670 1.00334 0.86597 0.78239 0.86763 0.77214 1.21032 1.21718 1.20128 0.90505 0.92454 0.93076 0.76781 0.80287 0.90014 0.86102 0.86077 0.90434 0.94276 0.92009 0.93378 0.80402 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.33 37.16 0.35 -2.18 16 2 C 0.13 2.16 2.20 -67.93 -0.15 2.01 16 3 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 4 N -0.71 -9.29 4.31 -55.21 -0.24 -9.53 16 5 C 0.57 8.62 7.69 -12.99 -0.10 8.52 16 6 O -0.52 -10.11 16.58 -10.05 -0.17 -10.27 16 7 C -0.07 -0.81 6.61 -37.81 -0.25 -1.06 16 8 C 0.00 0.02 10.58 29.23 0.31 0.33 16 9 O -0.30 -2.72 10.47 -30.85 -0.32 -3.04 16 10 C 0.01 0.09 7.30 37.45 0.27 0.36 16 11 C 0.02 0.13 7.31 37.45 0.27 0.41 16 12 O -0.29 -3.65 10.28 -45.78 -0.47 -4.12 16 13 C 0.17 3.09 2.52 -67.93 -0.17 2.92 16 14 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 15 C -0.17 -2.74 9.34 37.16 0.35 -2.39 16 16 N -0.74 -16.71 4.24 -53.42 -0.23 -16.94 16 17 C -0.24 -6.60 10.41 -15.06 -0.16 -6.75 16 18 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16 21 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 25 H 0.08 1.38 7.44 -51.93 -0.39 0.99 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.40 3.96 6.23 -40.82 -0.25 3.70 16 29 H 0.18 1.27 6.08 -52.49 -0.32 0.95 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.52 7.44 -51.93 -0.39 0.13 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.36 8.22 5.43 -40.82 -0.22 8.00 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -34.66 316.88 -5.32 -39.98 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.35 Total: 7.68 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 0.63 Total: 2.29 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.31 Total: -54.43 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.96 Total: -17.43 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.66 -5.32 -39.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485117503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.522 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds