Wall clock time and date at job start Mon Mar 30 2020 02:20:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09003 * 109.46903 * 2 1
4 4 N 1.46498 * 109.47606 * 120.00080 * 2 1 3
5 5 C 1.34774 * 120.00211 * 275.00118 * 4 2 1
6 6 O 1.21734 * 119.99747 * 359.97438 * 5 4 2
7 7 C 1.46368 * 119.99921 * 179.97438 * 5 4 2
8 8 C 1.33977 * 119.23393 * 359.73149 * 7 5 4
9 9 O 1.35007 * 121.68844 * 180.12526 * 8 7 5
10 10 C 1.43245 * 116.82770 * 343.30668 * 9 8 7
11 11 C 1.53561 * 108.08543 * 45.26088 * 10 9 8
12 12 O 1.36222 * 119.23382 * 179.97438 * 7 5 4
13 13 C 1.53006 * 109.46809 * 240.00581 * 2 1 3
14 14 H 1.09003 * 109.46914 * 299.99413 * 13 2 1
15 15 C 1.52999 * 109.46809 * 180.02562 * 13 2 1
16 16 N 1.46493 * 109.47135 * 59.99552 * 13 2 1
17 17 C 1.36945 * 119.99892 * 204.99848 * 16 13 2
18 18 H 1.08000 * 119.99422 * 359.72792 * 17 16 13
19 19 C 1.38811 * 120.00031 * 179.72716 * 17 16 13
20 20 N 1.31614 * 119.99700 * 179.97438 * 19 17 16
21 21 Si 1.86795 * 120.00072 * 0.02562 * 19 17 16
22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17
23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17
24 24 H 1.48505 * 109.47256 * 330.00020 * 21 19 17
25 25 H 1.09003 * 109.47419 * 59.99597 * 1 2 3
26 26 H 1.09003 * 109.46903 * 180.02562 * 1 2 3
27 27 H 1.09003 * 109.46886 * 299.99387 * 1 2 3
28 28 H 0.97004 * 119.99747 * 94.99469 * 4 2 1
29 29 H 1.07995 * 119.15613 * 0.36319 * 8 7 5
30 30 H 1.08996 * 109.74357 * 285.61433 * 10 9 8
31 31 H 1.09002 * 109.73975 * 164.90301 * 10 9 8
32 32 H 1.08997 * 109.74936 * 182.21688 * 11 10 9
33 33 H 1.08995 * 109.75371 * 61.46878 * 11 10 9
34 34 H 1.08994 * 109.47399 * 59.99551 * 15 13 2
35 35 H 1.09003 * 109.46886 * 180.02562 * 15 13 2
36 36 H 1.09003 * 109.46903 * 299.99419 * 15 13 2
37 37 H 0.97000 * 120.00738 * 24.73313 * 16 13 2
38 38 H 0.97004 * 120.00256 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1472 -0.0183 2.3571
6 8 1.8581 1.1629 2.4117
7 6 2.6347 -0.7085 3.5522
8 6 2.9433 -2.0100 3.4761
9 8 3.3946 -2.6957 4.5479
10 6 3.8773 -1.9231 5.6533
11 6 2.8750 -0.7898 5.9165
12 8 2.7593 -0.0138 4.7173
13 6 2.0399 -0.7212 -1.2494
14 1 1.6766 -1.7489 -1.2494
15 6 3.5699 -0.7217 -1.2491
16 7 1.5515 -0.0305 -2.4454
17 6 1.4207 -0.7136 -3.6251
18 1 1.6818 -1.7604 -3.6747
19 6 0.9525 -0.0606 -4.7570
20 7 0.8273 -0.7171 -5.8909
21 14 0.5016 1.7501 -4.6713
22 1 1.6948 2.5732 -4.9936
23 1 -0.5775 2.0383 -5.6499
24 1 0.0289 2.0783 -3.3023
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8901
28 1 2.2491 -1.6318 1.1525
29 1 2.8317 -2.5228 2.5322
30 1 4.8530 -1.5025 5.4104
31 1 3.9580 -2.5557 6.5373
32 1 3.2364 -0.1599 6.7293
33 1 1.9042 -1.2101 6.1788
34 1 3.9329 -1.2358 -0.3592
35 1 3.9332 -1.2351 -2.1394
36 1 3.9336 0.3058 -1.2488
37 1 1.3171 0.9097 -2.4009
38 1 0.4997 -0.2609 -6.6818
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001485117503.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:20:53
Heat of formation + Delta-G solvation = -98.317659 kcal
Electronic energy + Delta-G solvation = -21058.526596 eV
Core-core repulsion = 17708.989058 eV
Total energy + Delta-G solvation = -3349.537537 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-42.13138 -40.69294 -38.48978 -37.84754 -35.74687 -34.09106 -33.01809 -31.26448
-30.49540 -29.43605 -26.39898 -25.69938 -24.48075 -22.68710 -21.76963 -20.52798
-20.04705 -19.34919 -19.07749 -17.52378 -17.17534 -16.57104 -16.27443 -16.11151
-15.76045 -15.71084 -15.25760 -15.12172 -14.87739 -14.72437 -14.34759 -14.21864
-13.78894 -13.29720 -13.15680 -13.06677 -12.76045 -12.61943 -12.35204 -12.07325
-11.96291 -11.78817 -11.68253 -11.46903 -11.04236 -10.99236 -10.27227 -9.32731
-9.24675 -7.99570 -5.32603 0.23985 1.41113 1.41940 1.48240 1.54728
2.08213 2.24319 2.50364 2.71447 3.33117 3.40368 3.63330 3.67659
3.80085 3.97400 3.99678 4.14377 4.26493 4.30295 4.45112 4.58822
4.64268 4.72585 4.82749 4.83601 4.93681 5.02007 5.13920 5.29361
5.41647 5.51421 5.77008 5.81305 6.20454 6.24022 6.54673 7.08842
7.13165 7.84943 8.02253 9.21552
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.040361 B = 0.003920 C = 0.003723
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.565813 B = 7141.389722 C = 7518.109974
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.148 3.852
3 H 0.070 0.930
4 N -0.694 5.694
5 C 0.574 3.426
6 O -0.577 6.577
7 C -0.100 4.100
8 C 0.041 3.959
9 O -0.305 6.305
10 C 0.011 3.989
11 C 0.011 3.989
12 O -0.322 6.322
13 C 0.171 3.829
14 H 0.068 0.932
15 C -0.159 4.159
16 N -0.746 5.746
17 C -0.219 4.219
18 H 0.067 0.933
19 C -0.059 4.059
20 N -0.982 5.982
21 Si 0.943 3.057
22 H -0.283 1.283
23 H -0.298 1.298
24 H -0.253 1.253
25 H 0.058 0.942
26 H 0.069 0.931
27 H 0.050 0.950
28 H 0.414 0.586
29 H 0.206 0.794
30 H 0.087 0.913
31 H 0.157 0.843
32 H 0.146 0.854
33 H 0.081 0.919
34 H 0.077 0.923
35 H 0.042 0.958
36 H 0.040 0.960
37 H 0.363 0.637
38 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.074 -4.803 26.376 27.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.043 3.957
3 H 0.088 0.912
4 N -0.349 5.349
5 C 0.363 3.637
6 O -0.457 6.457
7 C -0.149 4.149
8 C -0.026 4.026
9 O -0.217 6.217
10 C -0.063 4.063
11 C -0.064 4.064
12 O -0.237 6.237
13 C 0.063 3.937
14 H 0.086 0.914
15 C -0.218 4.218
16 N -0.390 5.390
17 C -0.350 4.350
18 H 0.085 0.915
19 C -0.251 4.251
20 N -0.633 5.633
21 Si 0.771 3.229
22 H -0.210 1.210
23 H -0.225 1.225
24 H -0.178 1.178
25 H 0.077 0.923
26 H 0.088 0.912
27 H 0.069 0.931
28 H 0.253 0.747
29 H 0.222 0.778
30 H 0.105 0.895
31 H 0.174 0.826
32 H 0.163 0.837
33 H 0.099 0.901
34 H 0.095 0.905
35 H 0.062 0.938
36 H 0.059 0.941
37 H 0.196 0.804
38 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 5.894 -4.162 26.343 27.313
hybrid contribution -0.302 0.892 -0.565 1.098
sum 5.592 -3.270 25.778 26.579
Atomic orbital electron populations
1.22025 0.94760 1.02804 1.01338 1.21028 0.94440 0.96785 0.83487
0.91216 1.45582 1.66911 1.14381 1.08002 1.17485 0.77368 0.86002
0.82832 1.90820 1.52066 1.17438 1.85396 1.20121 1.13079 0.93101
0.88567 1.23538 0.95262 0.90830 0.92998 1.86108 1.75420 1.35367
1.24811 1.24050 0.97025 0.95116 0.90145 1.24009 1.00948 0.95479
0.85975 1.86370 1.89488 1.34760 1.13082 1.20546 0.93236 0.95929
0.83995 0.91392 1.22311 0.96936 1.01187 1.01388 1.42667 1.79886
1.09655 1.06775 1.18990 1.34501 0.94785 0.86733 0.91520 1.25346
1.02585 1.01740 0.95390 1.69851 1.54756 1.37510 1.01180 0.85591
0.77597 0.81721 0.77984 1.20980 1.22489 1.17804 0.92333 0.91201
0.93131 0.74692 0.77806 0.89517 0.82579 0.83675 0.90094 0.90471
0.93842 0.94068 0.80360 0.93463
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.71 9.33 71.98 0.67 -4.04 16
2 C 0.15 4.54 2.20 44.99 0.10 4.64 16
3 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16
4 N -0.69 -16.70 4.31 -446.78 -1.93 -18.63 16
5 C 0.57 16.63 7.69 86.36 0.66 17.29 16
6 O -0.58 -22.40 16.58 10.09 0.17 -22.23 16
7 C -0.10 -2.33 6.61 23.42 0.15 -2.17 16
8 C 0.04 0.65 10.58 66.85 0.71 1.36 16
9 O -0.31 -4.36 10.47 -69.29 -0.73 -5.09 16
10 C 0.01 0.10 7.30 72.17 0.53 0.63 16
11 C 0.01 0.13 7.31 72.17 0.53 0.66 16
12 O -0.32 -7.86 10.28 -71.86 -0.74 -8.60 16
13 C 0.17 5.83 2.52 44.99 0.11 5.95 16
14 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16
15 C -0.16 -4.92 9.34 71.98 0.67 -4.25 16
16 N -0.75 -32.98 4.24 -322.94 -1.37 -34.35 16
17 C -0.22 -11.87 10.41 84.03 0.87 -11.00 16
18 H 0.07 3.90 8.06 -2.91 -0.02 3.87 16
19 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16
20 N -0.98 -61.89 13.97 21.65 0.30 -61.59 16
21 Si 0.94 45.42 27.74 68.60 1.90 47.32 16
22 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16
23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16
24 H -0.25 -11.14 6.52 99.48 0.65 -10.49 16
25 H 0.06 2.04 7.44 -2.39 -0.02 2.02 16
26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
28 H 0.41 6.84 6.23 -92.71 -0.58 6.27 16
29 H 0.21 1.99 6.08 -2.91 -0.02 1.97 16
30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
31 H 0.16 0.30 8.14 -2.39 -0.02 0.28 16
32 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16
33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
34 H 0.08 1.79 7.44 -2.39 -0.02 1.77 16
35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
37 H 0.36 16.04 5.43 -92.71 -0.50 15.53 16
38 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16
Total: -1.00 -77.24 316.88 3.03 -74.21
By element:
Atomic # 1 Polarization: 22.88 SS G_CDS: -0.06 Total: 22.82 kcal
Atomic # 6 Polarization: 0.65 SS G_CDS: 5.48 Total: 6.13 kcal
Atomic # 7 Polarization: -111.57 SS G_CDS: -2.99 Total: -114.57 kcal
Atomic # 8 Polarization: -34.62 SS G_CDS: -1.30 Total: -35.91 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal
Total: -77.24 3.03 -74.21 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485117503.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.110 kcal
(2) G-P(sol) polarization free energy of solvation -77.239 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.318 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds