Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 N 1.46498 * 109.47606 * 120.00080 * 2 1 3 5 5 C 1.34774 * 120.00211 * 275.00118 * 4 2 1 6 6 O 1.21734 * 119.99747 * 359.97438 * 5 4 2 7 7 C 1.46368 * 119.99921 * 179.97438 * 5 4 2 8 8 C 1.33977 * 119.23393 * 359.73149 * 7 5 4 9 9 O 1.35007 * 121.68844 * 180.12526 * 8 7 5 10 10 C 1.43245 * 116.82770 * 343.30668 * 9 8 7 11 11 C 1.53561 * 108.08543 * 45.26088 * 10 9 8 12 12 O 1.36222 * 119.23382 * 179.97438 * 7 5 4 13 13 C 1.53006 * 109.46809 * 240.00581 * 2 1 3 14 14 H 1.09003 * 109.46914 * 299.99413 * 13 2 1 15 15 C 1.52999 * 109.46809 * 180.02562 * 13 2 1 16 16 N 1.46493 * 109.47135 * 59.99552 * 13 2 1 17 17 C 1.36945 * 119.99892 * 204.99848 * 16 13 2 18 18 H 1.08000 * 119.99422 * 359.72792 * 17 16 13 19 19 C 1.38811 * 120.00031 * 179.72716 * 17 16 13 20 20 N 1.31614 * 119.99700 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48505 * 109.47256 * 330.00020 * 21 19 17 25 25 H 1.09003 * 109.47419 * 59.99597 * 1 2 3 26 26 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46886 * 299.99387 * 1 2 3 28 28 H 0.97004 * 119.99747 * 94.99469 * 4 2 1 29 29 H 1.07995 * 119.15613 * 0.36319 * 8 7 5 30 30 H 1.08996 * 109.74357 * 285.61433 * 10 9 8 31 31 H 1.09002 * 109.73975 * 164.90301 * 10 9 8 32 32 H 1.08997 * 109.74936 * 182.21688 * 11 10 9 33 33 H 1.08995 * 109.75371 * 61.46878 * 11 10 9 34 34 H 1.08994 * 109.47399 * 59.99551 * 15 13 2 35 35 H 1.09003 * 109.46886 * 180.02562 * 15 13 2 36 36 H 1.09003 * 109.46903 * 299.99419 * 15 13 2 37 37 H 0.97000 * 120.00738 * 24.73313 * 16 13 2 38 38 H 0.97004 * 120.00256 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8581 1.1629 2.4117 7 6 2.6347 -0.7085 3.5522 8 6 2.9433 -2.0100 3.4761 9 8 3.3946 -2.6957 4.5479 10 6 3.8773 -1.9231 5.6533 11 6 2.8750 -0.7898 5.9165 12 8 2.7593 -0.0138 4.7173 13 6 2.0399 -0.7212 -1.2494 14 1 1.6766 -1.7489 -1.2494 15 6 3.5699 -0.7217 -1.2491 16 7 1.5515 -0.0305 -2.4454 17 6 1.4207 -0.7136 -3.6251 18 1 1.6818 -1.7604 -3.6747 19 6 0.9525 -0.0606 -4.7570 20 7 0.8273 -0.7171 -5.8909 21 14 0.5016 1.7501 -4.6713 22 1 1.6948 2.5732 -4.9936 23 1 -0.5775 2.0383 -5.6499 24 1 0.0289 2.0783 -3.3023 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.2491 -1.6318 1.1525 29 1 2.8317 -2.5228 2.5322 30 1 4.8530 -1.5025 5.4104 31 1 3.9580 -2.5557 6.5373 32 1 3.2364 -0.1599 6.7293 33 1 1.9042 -1.2101 6.1788 34 1 3.9329 -1.2358 -0.3592 35 1 3.9332 -1.2351 -2.1394 36 1 3.9336 0.3058 -1.2488 37 1 1.3171 0.9097 -2.4009 38 1 0.4997 -0.2609 -6.6818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485117503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = -98.317659 kcal Electronic energy + Delta-G solvation = -21058.526596 eV Core-core repulsion = 17708.989058 eV Total energy + Delta-G solvation = -3349.537537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.13138 -40.69294 -38.48978 -37.84754 -35.74687 -34.09106 -33.01809 -31.26448 -30.49540 -29.43605 -26.39898 -25.69938 -24.48075 -22.68710 -21.76963 -20.52798 -20.04705 -19.34919 -19.07749 -17.52378 -17.17534 -16.57104 -16.27443 -16.11151 -15.76045 -15.71084 -15.25760 -15.12172 -14.87739 -14.72437 -14.34759 -14.21864 -13.78894 -13.29720 -13.15680 -13.06677 -12.76045 -12.61943 -12.35204 -12.07325 -11.96291 -11.78817 -11.68253 -11.46903 -11.04236 -10.99236 -10.27227 -9.32731 -9.24675 -7.99570 -5.32603 0.23985 1.41113 1.41940 1.48240 1.54728 2.08213 2.24319 2.50364 2.71447 3.33117 3.40368 3.63330 3.67659 3.80085 3.97400 3.99678 4.14377 4.26493 4.30295 4.45112 4.58822 4.64268 4.72585 4.82749 4.83601 4.93681 5.02007 5.13920 5.29361 5.41647 5.51421 5.77008 5.81305 6.20454 6.24022 6.54673 7.08842 7.13165 7.84943 8.02253 9.21552 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040361 B = 0.003920 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.565813 B = 7141.389722 C = 7518.109974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.070 0.930 4 N -0.694 5.694 5 C 0.574 3.426 6 O -0.577 6.577 7 C -0.100 4.100 8 C 0.041 3.959 9 O -0.305 6.305 10 C 0.011 3.989 11 C 0.011 3.989 12 O -0.322 6.322 13 C 0.171 3.829 14 H 0.068 0.932 15 C -0.159 4.159 16 N -0.746 5.746 17 C -0.219 4.219 18 H 0.067 0.933 19 C -0.059 4.059 20 N -0.982 5.982 21 Si 0.943 3.057 22 H -0.283 1.283 23 H -0.298 1.298 24 H -0.253 1.253 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.414 0.586 29 H 0.206 0.794 30 H 0.087 0.913 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.363 0.637 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.074 -4.803 26.376 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.088 0.912 4 N -0.349 5.349 5 C 0.363 3.637 6 O -0.457 6.457 7 C -0.149 4.149 8 C -0.026 4.026 9 O -0.217 6.217 10 C -0.063 4.063 11 C -0.064 4.064 12 O -0.237 6.237 13 C 0.063 3.937 14 H 0.086 0.914 15 C -0.218 4.218 16 N -0.390 5.390 17 C -0.350 4.350 18 H 0.085 0.915 19 C -0.251 4.251 20 N -0.633 5.633 21 Si 0.771 3.229 22 H -0.210 1.210 23 H -0.225 1.225 24 H -0.178 1.178 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.253 0.747 29 H 0.222 0.778 30 H 0.105 0.895 31 H 0.174 0.826 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.196 0.804 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.894 -4.162 26.343 27.313 hybrid contribution -0.302 0.892 -0.565 1.098 sum 5.592 -3.270 25.778 26.579 Atomic orbital electron populations 1.22025 0.94760 1.02804 1.01338 1.21028 0.94440 0.96785 0.83487 0.91216 1.45582 1.66911 1.14381 1.08002 1.17485 0.77368 0.86002 0.82832 1.90820 1.52066 1.17438 1.85396 1.20121 1.13079 0.93101 0.88567 1.23538 0.95262 0.90830 0.92998 1.86108 1.75420 1.35367 1.24811 1.24050 0.97025 0.95116 0.90145 1.24009 1.00948 0.95479 0.85975 1.86370 1.89488 1.34760 1.13082 1.20546 0.93236 0.95929 0.83995 0.91392 1.22311 0.96936 1.01187 1.01388 1.42667 1.79886 1.09655 1.06775 1.18990 1.34501 0.94785 0.86733 0.91520 1.25346 1.02585 1.01740 0.95390 1.69851 1.54756 1.37510 1.01180 0.85591 0.77597 0.81721 0.77984 1.20980 1.22489 1.17804 0.92333 0.91201 0.93131 0.74692 0.77806 0.89517 0.82579 0.83675 0.90094 0.90471 0.93842 0.94068 0.80360 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.33 71.98 0.67 -4.04 16 2 C 0.15 4.54 2.20 44.99 0.10 4.64 16 3 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 4 N -0.69 -16.70 4.31 -446.78 -1.93 -18.63 16 5 C 0.57 16.63 7.69 86.36 0.66 17.29 16 6 O -0.58 -22.40 16.58 10.09 0.17 -22.23 16 7 C -0.10 -2.33 6.61 23.42 0.15 -2.17 16 8 C 0.04 0.65 10.58 66.85 0.71 1.36 16 9 O -0.31 -4.36 10.47 -69.29 -0.73 -5.09 16 10 C 0.01 0.10 7.30 72.17 0.53 0.63 16 11 C 0.01 0.13 7.31 72.17 0.53 0.66 16 12 O -0.32 -7.86 10.28 -71.86 -0.74 -8.60 16 13 C 0.17 5.83 2.52 44.99 0.11 5.95 16 14 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 15 C -0.16 -4.92 9.34 71.98 0.67 -4.25 16 16 N -0.75 -32.98 4.24 -322.94 -1.37 -34.35 16 17 C -0.22 -11.87 10.41 84.03 0.87 -11.00 16 18 H 0.07 3.90 8.06 -2.91 -0.02 3.87 16 19 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 20 N -0.98 -61.89 13.97 21.65 0.30 -61.59 16 21 Si 0.94 45.42 27.74 68.60 1.90 47.32 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.25 -11.14 6.52 99.48 0.65 -10.49 16 25 H 0.06 2.04 7.44 -2.39 -0.02 2.02 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.41 6.84 6.23 -92.71 -0.58 6.27 16 29 H 0.21 1.99 6.08 -2.91 -0.02 1.97 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.16 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.79 7.44 -2.39 -0.02 1.77 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.36 16.04 5.43 -92.71 -0.50 15.53 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -77.24 316.88 3.03 -74.21 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.06 Total: 22.82 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.48 Total: 6.13 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -2.99 Total: -114.57 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.30 Total: -35.91 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Total: -77.24 3.03 -74.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485117503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.110 kcal (2) G-P(sol) polarization free energy of solvation -77.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds