Wall clock time and date at job start Mon Mar 30 2020 00:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 110.39184 * 2 1 4 4 C 1.54574 * 110.43910 * 237.44717 * 2 1 3 5 5 C 1.54498 * 102.14394 * 214.40852 * 4 2 1 6 6 C 1.53001 * 110.46112 * 134.22541 * 5 4 2 7 7 N 1.46498 * 110.36688 * 256.50369 * 5 4 2 8 8 C 1.34777 * 119.99828 * 176.57770 * 7 5 4 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 5 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 5 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47138 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00019 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99907 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47496 * 89.99791 * 16 14 12 18 18 H 1.48494 * 109.47146 * 210.00132 * 16 14 12 19 19 H 1.48504 * 109.46915 * 329.99781 * 16 14 12 20 20 C 1.51327 * 104.82627 * 15.34447 * 5 4 2 21 21 O 1.20818 * 125.09838 * 182.31875 * 20 5 4 22 22 O 1.34067 * 109.80930 * 2.30918 * 20 5 4 23 23 H 1.08998 * 109.47118 * 299.02905 * 1 2 3 24 24 H 1.09000 * 109.47383 * 59.03231 * 1 2 3 25 25 H 1.09002 * 109.47267 * 179.03094 * 1 2 3 26 26 H 1.09001 * 109.47262 * 180.97203 * 3 2 1 27 27 H 1.09005 * 109.47433 * 300.96550 * 3 2 1 28 28 H 1.08994 * 109.47170 * 60.96935 * 3 2 1 29 29 H 1.08999 * 110.87092 * 96.24429 * 4 2 1 30 30 H 1.08999 * 110.86658 * 332.57046 * 4 2 1 31 31 H 1.08999 * 109.46971 * 181.59948 * 6 5 4 32 32 H 1.09000 * 109.47460 * 301.60164 * 6 5 4 33 33 H 1.09004 * 109.46753 * 61.60522 * 6 5 4 34 34 H 0.97001 * 120.00384 * 356.86217 * 7 5 4 35 35 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 37 37 H 1.09006 * 109.46868 * 59.99976 * 11 10 8 38 38 H 0.97010 * 119.99768 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 6 2.0697 -0.7794 -1.2209 5 6 3.3509 -1.4285 -0.6515 6 6 3.4292 -2.9019 -1.0563 7 7 4.5381 -0.7086 -1.1187 8 6 5.7608 -1.0703 -0.6821 9 8 5.8789 -1.9975 0.0956 10 7 6.8526 -0.4044 -1.1075 11 6 8.1817 -0.7980 -0.6333 12 6 9.2223 0.0977 -1.2546 13 1 8.9235 0.8820 -1.9343 14 6 10.5558 -0.0834 -0.9544 15 7 11.4638 0.6986 -1.4962 16 14 11.0726 -1.4394 0.2218 17 1 11.3313 -2.6859 -0.5427 18 1 12.3089 -1.0309 0.9356 19 1 9.9882 -1.6794 1.2076 20 6 3.2148 -1.3015 0.8503 21 8 4.0416 -1.6590 1.6554 22 8 2.0393 -0.7326 1.1535 23 1 -0.3633 0.4987 0.8985 24 1 -0.3634 0.5288 -0.8812 25 1 -0.3634 -1.0275 -0.0174 26 1 3.1528 1.4167 -0.0174 27 1 1.6940 1.9590 -0.8812 28 1 1.7222 1.9484 0.8985 29 1 2.3091 -0.1010 -2.0397 30 1 1.3582 -1.5405 -1.5412 31 1 4.3231 -3.3507 -0.6232 32 1 2.5461 -3.4264 -0.6915 33 1 3.4743 -2.9783 -2.1427 34 1 4.4440 0.0311 -1.7391 35 1 6.7584 0.3350 -1.7282 36 1 8.2227 -0.7047 0.4519 37 1 8.3770 -1.8323 -0.9167 38 1 12.4020 0.5709 -1.2853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527652606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:56 Heat of formation + Delta-G solvation = -108.292888 kcal Electronic energy + Delta-G solvation = -21682.185555 eV Core-core repulsion = 18332.215460 eV Total energy + Delta-G solvation = -3349.970096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63810 -39.12306 -37.59218 -35.55071 -34.10034 -33.53643 -32.41225 -31.00617 -27.94250 -27.54242 -27.24153 -24.05383 -22.46732 -21.63778 -20.71552 -19.39228 -18.21301 -17.15659 -16.66546 -16.33224 -16.03110 -15.28719 -14.90537 -14.56033 -14.34940 -14.09294 -13.74682 -13.56910 -13.20299 -12.90435 -12.74905 -12.66299 -12.35693 -12.29068 -12.18274 -12.11945 -11.93697 -11.77670 -11.22268 -10.94334 -10.72501 -10.64552 -10.21396 -9.90904 -9.47146 -9.33815 -8.82045 -8.73210 -8.00979 -6.18220 -4.19886 2.08063 3.08531 3.18262 3.31575 3.38674 3.49168 3.63143 3.87752 3.99715 4.18803 4.37057 4.38149 4.54801 4.88996 4.91064 5.13342 5.17108 5.17902 5.30737 5.36975 5.38302 5.41673 5.53816 5.65569 5.71578 5.81307 6.27457 6.53434 6.73660 6.82348 7.16125 7.26442 7.41991 7.53112 7.69878 8.29745 8.69427 8.82968 9.24068 9.43858 10.93683 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034035 B = 0.004496 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.478390 B = 6225.592616 C = 6460.893457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.104 3.896 3 C -0.168 4.168 4 C -0.149 4.149 5 C 0.144 3.856 6 C -0.155 4.155 7 N -0.741 5.741 8 C 0.687 3.313 9 O -0.568 6.568 10 N -0.721 5.721 11 C 0.239 3.761 12 C -0.542 4.542 13 H 0.079 0.921 14 C 0.078 3.922 15 N -0.894 5.894 16 Si 0.876 3.124 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.259 1.259 20 C 0.466 3.534 21 O -0.401 6.401 22 O -0.345 6.345 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.396 0.604 35 H 0.391 0.609 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.212 -0.009 -2.662 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.067 3.933 3 C -0.225 4.225 4 C -0.187 4.187 5 C 0.054 3.946 6 C -0.213 4.213 7 N -0.402 5.402 8 C 0.387 3.613 9 O -0.444 6.444 10 N -0.374 5.374 11 C 0.117 3.883 12 C -0.580 4.580 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.531 5.531 16 Si 0.702 3.298 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.183 1.183 20 C 0.300 3.700 21 O -0.277 6.277 22 O -0.263 6.263 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.232 0.768 35 H 0.223 0.777 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.524 -1.036 -1.302 23.583 hybrid contribution 0.410 0.166 -0.190 0.481 sum -23.114 -0.871 -1.492 23.178 Atomic orbital electron populations 1.21865 0.90950 1.03586 1.03501 1.23017 0.95783 0.91893 0.82650 1.22279 1.02455 0.94038 1.03764 1.23395 0.96076 1.01032 0.98224 1.21233 0.85812 0.95516 0.92067 1.22117 1.04570 0.92247 1.02352 1.45130 1.04042 1.38619 1.52409 1.16200 0.80243 0.83413 0.81492 1.90960 1.84991 1.30872 1.37615 1.45378 1.06099 1.36182 1.49745 1.19361 0.77781 0.95893 0.95287 1.21088 0.90456 1.17355 1.29062 0.90350 1.24766 0.96175 0.96028 0.95592 1.69880 1.01421 1.38376 1.43470 0.86826 0.78740 0.82262 0.81967 1.19851 1.20942 1.18326 1.23338 0.79645 0.75713 0.91316 1.90837 1.37459 1.43044 1.56391 1.87109 1.35847 1.63082 1.40275 0.91048 0.90030 0.91213 0.91464 0.90034 0.90878 0.87855 0.87692 0.88852 0.91721 0.91101 0.76845 0.77655 0.95850 0.96335 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.91 37.15 0.33 -0.46 16 2 C 0.10 0.88 1.24 -89.80 -0.11 0.77 16 3 C -0.17 -1.31 8.78 37.16 0.33 -0.98 16 4 C -0.15 -1.12 5.54 -25.12 -0.14 -1.26 16 5 C 0.14 1.83 0.96 -131.88 -0.13 1.70 16 6 C -0.15 -1.96 8.39 37.16 0.31 -1.65 16 7 N -0.74 -10.40 5.15 -52.47 -0.27 -10.67 16 8 C 0.69 13.72 7.98 -86.92 -0.69 13.02 16 9 O -0.57 -13.76 12.16 -17.53 -0.21 -13.97 16 10 N -0.72 -15.03 5.55 -66.41 -0.37 -15.39 16 11 C 0.24 6.09 4.50 -5.19 -0.02 6.07 16 12 C -0.54 -15.09 9.83 -34.44 -0.34 -15.43 16 13 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 14 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 15 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 16 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 20 C 0.47 7.70 7.11 36.31 0.26 7.95 16 21 O -0.40 -8.76 15.48 -26.19 -0.41 -9.16 16 22 O -0.35 -4.69 10.48 -38.48 -0.40 -5.09 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.53 7.41 -51.93 -0.38 0.15 16 30 H 0.10 0.58 7.59 -51.93 -0.39 0.18 16 31 H 0.09 1.59 6.29 -51.93 -0.33 1.26 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 4.12 8.21 -40.82 -0.33 3.78 16 35 H 0.39 7.01 8.34 -40.82 -0.34 6.67 16 36 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 313.53 15.07 4.72 4.72 Total: -1.00 -36.71 313.53 -6.64 -43.35 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.50 Total: 3.04 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -0.30 Total: 11.88 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.13 Total: -52.12 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.02 Total: -28.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.71 -6.64 -43.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527652606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.940 kcal (2) G-P(sol) polarization free energy of solvation -36.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds