Wall clock time and date at job start Mon Mar 30 2020 00:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 110.39184 * 2 1 4 4 C 1.54574 * 110.43910 * 237.44717 * 2 1 3 5 5 C 1.54498 * 102.14394 * 214.40852 * 4 2 1 6 6 C 1.53001 * 110.46112 * 134.22541 * 5 4 2 7 7 N 1.46498 * 110.36688 * 256.50369 * 5 4 2 8 8 C 1.34777 * 119.99828 * 176.57770 * 7 5 4 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 5 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 5 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47138 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00019 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99907 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47496 * 89.99791 * 16 14 12 18 18 H 1.48494 * 109.47146 * 210.00132 * 16 14 12 19 19 H 1.48504 * 109.46915 * 329.99781 * 16 14 12 20 20 C 1.51327 * 104.82627 * 15.34447 * 5 4 2 21 21 O 1.20818 * 125.09838 * 182.31875 * 20 5 4 22 22 O 1.34067 * 109.80930 * 2.30918 * 20 5 4 23 23 H 1.08998 * 109.47118 * 299.02905 * 1 2 3 24 24 H 1.09000 * 109.47383 * 59.03231 * 1 2 3 25 25 H 1.09002 * 109.47267 * 179.03094 * 1 2 3 26 26 H 1.09001 * 109.47262 * 180.97203 * 3 2 1 27 27 H 1.09005 * 109.47433 * 300.96550 * 3 2 1 28 28 H 1.08994 * 109.47170 * 60.96935 * 3 2 1 29 29 H 1.08999 * 110.87092 * 96.24429 * 4 2 1 30 30 H 1.08999 * 110.86658 * 332.57046 * 4 2 1 31 31 H 1.08999 * 109.46971 * 181.59948 * 6 5 4 32 32 H 1.09000 * 109.47460 * 301.60164 * 6 5 4 33 33 H 1.09004 * 109.46753 * 61.60522 * 6 5 4 34 34 H 0.97001 * 120.00384 * 356.86217 * 7 5 4 35 35 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 37 37 H 1.09006 * 109.46868 * 59.99976 * 11 10 8 38 38 H 0.97010 * 119.99768 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 6 2.0697 -0.7794 -1.2209 5 6 3.3509 -1.4285 -0.6515 6 6 3.4292 -2.9019 -1.0563 7 7 4.5381 -0.7086 -1.1187 8 6 5.7608 -1.0703 -0.6821 9 8 5.8789 -1.9975 0.0956 10 7 6.8526 -0.4044 -1.1075 11 6 8.1817 -0.7980 -0.6333 12 6 9.2223 0.0977 -1.2546 13 1 8.9235 0.8820 -1.9343 14 6 10.5558 -0.0834 -0.9544 15 7 11.4638 0.6986 -1.4962 16 14 11.0726 -1.4394 0.2218 17 1 11.3313 -2.6859 -0.5427 18 1 12.3089 -1.0309 0.9356 19 1 9.9882 -1.6794 1.2076 20 6 3.2148 -1.3015 0.8503 21 8 4.0416 -1.6590 1.6554 22 8 2.0393 -0.7326 1.1535 23 1 -0.3633 0.4987 0.8985 24 1 -0.3634 0.5288 -0.8812 25 1 -0.3634 -1.0275 -0.0174 26 1 3.1528 1.4167 -0.0174 27 1 1.6940 1.9590 -0.8812 28 1 1.7222 1.9484 0.8985 29 1 2.3091 -0.1010 -2.0397 30 1 1.3582 -1.5405 -1.5412 31 1 4.3231 -3.3507 -0.6232 32 1 2.5461 -3.4264 -0.6915 33 1 3.4743 -2.9783 -2.1427 34 1 4.4440 0.0311 -1.7391 35 1 6.7584 0.3350 -1.7282 36 1 8.2227 -0.7047 0.4519 37 1 8.3770 -1.8323 -0.9167 38 1 12.4020 0.5709 -1.2853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527652606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:55 Heat of formation + Delta-G solvation = -136.627394 kcal Electronic energy + Delta-G solvation = -21683.414232 eV Core-core repulsion = 18332.215460 eV Total energy + Delta-G solvation = -3351.198772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.69483 -40.62018 -38.85815 -36.86283 -35.91511 -34.51856 -34.30737 -32.31330 -29.54328 -28.42890 -28.01182 -25.11791 -24.35039 -22.53733 -22.31089 -20.65536 -19.76497 -18.42818 -18.21027 -17.80432 -17.13585 -16.76964 -16.35361 -15.97746 -15.77550 -15.26455 -15.02957 -14.71226 -14.42833 -14.30471 -14.30109 -13.72148 -13.50133 -13.31457 -13.08413 -13.02004 -12.99121 -12.71238 -12.68589 -12.51903 -12.07115 -11.95681 -11.65766 -11.49120 -11.44058 -10.94810 -10.92183 -10.22124 -9.74538 -8.41240 -6.47104 0.86279 1.30732 1.33307 1.47624 1.84756 2.10185 2.23471 2.27483 2.86271 2.94898 3.12484 3.43175 3.51542 3.74306 3.93547 4.08132 4.53364 4.60098 4.65368 4.68773 4.76901 4.77895 4.82654 4.93217 4.94201 5.03852 5.18857 5.19439 5.26035 5.33383 5.38956 5.56249 5.81275 5.95912 6.24157 6.48931 6.54443 7.13401 7.25214 7.70247 8.73330 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034035 B = 0.004496 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.478390 B = 6225.592616 C = 6460.893457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.092 3.908 3 C -0.170 4.170 4 C -0.132 4.132 5 C 0.139 3.861 6 C -0.153 4.153 7 N -0.716 5.716 8 C 0.685 3.315 9 O -0.611 6.611 10 N -0.720 5.720 11 C 0.254 3.746 12 C -0.543 4.543 13 H 0.063 0.937 14 C 0.031 3.969 15 N -0.928 5.928 16 Si 0.932 3.068 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.269 1.269 20 C 0.460 3.540 21 O -0.473 6.473 22 O -0.361 6.361 23 H 0.065 0.935 24 H 0.116 0.884 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.418 0.582 35 H 0.405 0.595 36 H 0.001 0.999 37 H 0.009 0.991 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.940 0.350 -4.513 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.056 3.944 3 C -0.227 4.227 4 C -0.169 4.169 5 C 0.050 3.950 6 C -0.211 4.211 7 N -0.379 5.379 8 C 0.384 3.616 9 O -0.490 6.490 10 N -0.375 5.375 11 C 0.130 3.870 12 C -0.581 4.581 13 H 0.082 0.918 14 C -0.170 4.170 15 N -0.567 5.567 16 Si 0.757 3.243 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.194 1.194 20 C 0.298 3.702 21 O -0.355 6.355 22 O -0.279 6.279 23 H 0.084 0.916 24 H 0.135 0.865 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.139 0.861 28 H 0.084 0.916 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.257 0.743 35 H 0.241 0.759 36 H 0.019 0.981 37 H 0.027 0.973 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.336 -0.621 -3.217 26.540 hybrid contribution 1.106 0.137 0.369 1.174 sum -25.230 -0.484 -2.849 25.395 Atomic orbital electron populations 1.21938 0.88174 1.04476 1.04911 1.23584 0.97747 0.91682 0.81380 1.22363 1.00906 0.94051 1.05385 1.23556 0.93086 1.01981 0.98275 1.21533 0.87273 0.96263 0.89950 1.22102 1.03269 0.91976 1.03744 1.44857 1.02491 1.38836 1.51668 1.16374 0.81484 0.82716 0.80977 1.90954 1.85903 1.32740 1.39379 1.45057 1.05091 1.36990 1.50334 1.18895 0.79598 0.94840 0.93713 1.21253 0.91175 1.17110 1.28535 0.91847 1.25491 0.96399 0.98027 0.97035 1.69962 1.02001 1.39903 1.44867 0.85934 0.78322 0.80106 0.79978 1.18702 1.19614 1.19376 1.24047 0.79392 0.74158 0.92571 1.90791 1.40188 1.46042 1.58471 1.87089 1.34506 1.62904 1.43367 0.91637 0.86548 0.90700 0.93903 0.86136 0.91574 0.84281 0.84429 0.93778 0.89471 0.88376 0.74297 0.75949 0.98138 0.97322 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.91 71.98 0.64 -0.30 16 2 C 0.09 1.25 1.24 -10.26 -0.01 1.24 16 3 C -0.17 -2.14 8.78 71.98 0.63 -1.51 16 4 C -0.13 -1.33 5.54 31.64 0.18 -1.16 16 5 C 0.14 3.28 0.96 3.57 0.00 3.28 16 6 C -0.15 -3.64 8.39 71.98 0.60 -3.03 16 7 N -0.72 -19.01 5.15 -438.17 -2.26 -21.27 16 8 C 0.68 27.56 7.98 179.05 1.43 28.99 16 9 O -0.61 -30.72 12.16 17.81 0.22 -30.50 16 10 N -0.72 -30.17 5.55 -482.28 -2.68 -32.85 16 11 C 0.25 13.17 4.50 85.63 0.38 13.56 16 12 C -0.54 -30.65 9.83 25.60 0.25 -30.39 16 13 H 0.06 3.69 7.84 -2.91 -0.02 3.67 16 14 C 0.03 1.80 5.47 84.66 0.46 2.26 16 15 N -0.93 -56.02 13.96 21.45 0.30 -55.72 16 16 Si 0.93 45.91 27.47 68.60 1.88 47.79 16 17 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.27 -13.61 6.54 99.48 0.65 -12.96 16 20 C 0.46 15.38 7.11 71.44 0.51 15.88 16 21 O -0.47 -21.90 15.48 29.10 0.45 -21.44 16 22 O -0.36 -9.54 10.48 -50.19 -0.53 -10.06 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 26 H 0.04 0.76 8.08 -2.39 -0.02 0.74 16 27 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.14 0.50 7.41 -2.39 -0.02 0.48 16 30 H 0.14 0.63 7.59 -2.39 -0.02 0.61 16 31 H 0.04 1.52 6.29 -2.39 -0.02 1.51 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.42 7.41 8.21 -92.71 -0.76 6.65 16 35 H 0.41 14.32 8.34 -92.71 -0.77 13.55 16 36 H 0.00 0.04 7.20 -2.39 -0.02 0.02 16 37 H 0.01 0.48 7.57 -2.38 -0.02 0.46 16 38 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -85.77 313.53 1.97 -83.80 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -0.50 Total: 11.44 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 5.08 Total: 28.81 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -4.63 Total: -109.84 kcal Atomic # 8 Polarization: -62.15 SS G_CDS: 0.14 Total: -62.01 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.79 kcal Total: -85.77 1.97 -83.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527652606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.825 kcal (2) G-P(sol) polarization free energy of solvation -85.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds