Wall clock time and date at job start Mon Mar 30 2020 00:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 110.39054 * 2 1 4 4 C 1.54564 * 110.44045 * 237.44282 * 2 1 3 5 5 C 1.54502 * 102.14715 * 268.10826 * 4 2 1 6 6 C 1.52996 * 110.46076 * 225.77074 * 5 4 2 7 7 N 1.46505 * 110.36526 * 103.49062 * 5 4 2 8 8 C 1.34781 * 119.99511 * 183.14630 * 7 5 4 9 9 O 1.21584 * 119.99970 * 359.97438 * 8 7 5 10 10 N 1.34771 * 119.99489 * 180.02562 * 8 7 5 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47064 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47171 * 89.99544 * 16 14 12 18 18 H 1.48500 * 109.46632 * 209.99795 * 16 14 12 19 19 H 1.48494 * 109.47053 * 329.99231 * 16 14 12 20 20 C 1.51323 * 104.81882 * 344.65657 * 5 4 2 21 21 O 1.20832 * 125.09120 * 177.68399 * 20 5 4 22 22 O 1.34061 * 109.81499 * 357.68603 * 20 5 4 23 23 H 1.08992 * 109.47042 * 299.03322 * 1 2 3 24 24 H 1.09002 * 109.46586 * 59.03539 * 1 2 3 25 25 H 1.09001 * 109.46813 * 179.02849 * 1 2 3 26 26 H 1.09000 * 109.46765 * 180.96842 * 3 2 1 27 27 H 1.08998 * 109.46804 * 300.96672 * 3 2 1 28 28 H 1.09001 * 109.47489 * 60.96734 * 3 2 1 29 29 H 1.08999 * 110.87126 * 149.94715 * 4 2 1 30 30 H 1.09002 * 110.87356 * 26.27005 * 4 2 1 31 31 H 1.08995 * 109.47307 * 298.39822 * 6 5 4 32 32 H 1.09000 * 109.47313 * 58.39880 * 6 5 4 33 33 H 1.08999 * 109.46657 * 178.39505 * 6 5 4 34 34 H 0.97003 * 120.00113 * 3.14879 * 7 5 4 35 35 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 37 37 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 38 38 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0632 1.4341 0.0000 4 6 2.0699 -0.7794 -1.2207 5 6 2.2301 -2.2063 -0.6504 6 6 3.5824 -2.7958 -1.0563 7 7 1.1395 -3.0668 -1.1157 8 6 1.0541 -4.3402 -0.6823 9 8 1.8824 -4.7748 0.0945 10 7 0.0511 -5.1319 -1.1107 11 6 -0.0421 -6.5158 -0.6391 12 6 -1.2431 -7.1791 -1.2625 13 1 -1.8741 -6.6251 -1.9417 14 6 -1.5370 -8.4930 -0.9650 15 7 -0.7688 -9.1675 -0.1376 16 14 -3.0253 -9.3153 -1.7383 17 1 -2.6285 -9.9538 -3.0189 18 1 -3.5559 -10.3489 -0.8134 19 1 -4.0747 -8.2971 -1.9970 20 6 2.1603 -2.0331 0.8512 21 8 2.2067 -2.9322 1.6571 22 8 2.0393 -0.7326 1.1535 23 1 -0.3633 0.4987 0.8985 24 1 -0.3632 0.5288 -0.8812 25 1 -0.3633 -1.0275 -0.0174 26 1 3.1529 1.4166 -0.0174 27 1 1.6941 1.9589 -0.8812 28 1 1.7223 1.9485 0.8985 29 1 3.0315 -0.3796 -1.5424 30 1 1.3497 -0.7669 -2.0389 31 1 3.6370 -2.8655 -2.1426 32 1 4.3833 -2.1518 -0.6929 33 1 3.6903 -3.7898 -0.6224 34 1 0.4790 -2.7201 -1.7358 35 1 -0.6094 -4.7853 -1.7307 36 1 0.8604 -7.0577 -0.9222 37 1 -0.1454 -6.5238 0.4459 38 1 -0.9757 -10.0917 0.0721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527652613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:59 Heat of formation + Delta-G solvation = -111.603924 kcal Electronic energy + Delta-G solvation = -21616.024795 eV Core-core repulsion = 18265.911122 eV Total energy + Delta-G solvation = -3350.113673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56650 -38.97914 -37.51566 -35.43590 -33.98448 -33.47275 -32.38437 -30.82512 -27.88681 -27.17973 -26.93945 -23.99670 -22.76865 -21.59164 -20.69523 -19.28056 -18.04327 -17.09781 -16.57142 -16.11351 -15.85549 -15.16522 -14.85336 -14.59503 -14.33244 -13.94783 -13.69831 -13.49545 -13.16259 -12.81358 -12.68746 -12.54873 -12.19605 -12.15943 -12.04010 -11.92639 -11.72638 -11.66916 -11.16206 -10.93013 -10.86379 -10.58960 -10.28131 -10.10047 -9.33526 -9.19325 -8.71242 -8.67934 -7.73740 -6.11760 -4.18522 2.16123 3.14484 3.26436 3.27942 3.33446 3.36750 3.73533 3.93739 4.11661 4.23884 4.34718 4.42829 4.59465 4.96773 5.04207 5.17621 5.20978 5.24082 5.35343 5.40713 5.43558 5.45956 5.61468 5.69467 5.77568 5.84733 6.36543 6.62859 6.87986 7.08893 7.55046 7.57227 7.62762 7.77575 7.91318 8.06235 8.79379 8.95839 9.37428 9.51910 10.98440 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.004197 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.147693 B = 6669.734130 C = 6934.087840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 C -0.142 4.142 4 C -0.149 4.149 5 C 0.145 3.855 6 C -0.155 4.155 7 N -0.743 5.743 8 C 0.685 3.315 9 O -0.566 6.566 10 N -0.728 5.728 11 C 0.268 3.732 12 C -0.542 4.542 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.884 5.884 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.465 3.535 21 O -0.399 6.399 22 O -0.346 6.346 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.394 0.606 35 H 0.384 0.616 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 22.555 -5.863 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 C -0.199 4.199 4 C -0.187 4.187 5 C 0.055 3.945 6 C -0.213 4.213 7 N -0.404 5.404 8 C 0.384 3.616 9 O -0.441 6.441 10 N -0.381 5.381 11 C 0.147 3.853 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.299 3.701 21 O -0.275 6.275 22 O -0.264 6.264 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.229 0.771 35 H 0.216 0.784 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.884 21.528 -4.391 22.507 hybrid contribution -1.500 -0.247 -1.084 1.867 sum 3.384 21.281 -5.475 22.233 Atomic orbital electron populations 1.22280 0.92796 1.03774 1.03673 1.23003 0.94669 0.92939 0.82735 1.21860 1.02157 0.92410 1.03440 1.23387 1.04288 0.92885 0.98168 1.21205 0.90773 0.90550 0.92021 1.22116 0.92724 1.04185 1.02274 1.45187 1.30803 1.11780 1.52661 1.16236 0.83496 0.80217 0.81617 1.90965 1.42121 1.73472 1.37551 1.45705 1.27807 1.14967 1.49602 1.18980 0.96989 0.73972 0.95349 1.21218 1.11065 0.97227 1.28518 0.92017 1.24946 0.97024 0.97036 0.95022 1.69984 1.37910 1.10379 1.33903 0.86418 0.82305 0.79190 0.78982 1.20506 1.21022 1.19820 1.23356 0.74043 0.81334 0.91378 1.90851 1.40482 1.39860 1.56330 1.87106 1.77631 1.21391 1.40261 0.90923 0.90118 0.91450 0.91215 0.90088 0.91070 0.87767 0.87955 0.91189 0.91804 0.88758 0.77087 0.78382 0.95714 0.95702 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 8.77 37.16 0.33 -1.04 16 2 C 0.10 0.93 1.24 -89.79 -0.11 0.81 16 3 C -0.14 -0.84 8.92 37.16 0.33 -0.51 16 4 C -0.15 -1.19 5.54 -25.12 -0.14 -1.33 16 5 C 0.14 1.93 0.96 -131.88 -0.13 1.81 16 6 C -0.15 -2.08 8.39 37.16 0.31 -1.77 16 7 N -0.74 -10.91 5.15 -52.47 -0.27 -11.18 16 8 C 0.68 14.35 7.98 -86.92 -0.69 13.66 16 9 O -0.57 -14.47 12.16 -17.48 -0.21 -14.68 16 10 N -0.73 -15.79 5.55 -66.41 -0.37 -16.16 16 11 C 0.27 7.34 5.43 -5.19 -0.03 7.32 16 12 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 13 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.88 -26.61 13.29 55.43 0.74 -25.88 16 16 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.46 8.00 7.11 36.31 0.26 8.26 16 21 O -0.40 -9.06 15.50 -26.18 -0.41 -9.46 16 22 O -0.35 -4.88 10.48 -38.47 -0.40 -5.29 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.07 0.40 8.13 -51.93 -0.42 -0.03 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.62 7.60 -51.93 -0.39 0.23 16 30 H 0.10 0.57 7.40 -51.93 -0.38 0.18 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.70 6.28 -51.93 -0.33 1.37 16 34 H 0.39 4.29 8.21 -40.82 -0.33 3.96 16 35 H 0.38 7.01 8.33 -40.82 -0.34 6.67 16 36 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.02 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -36.83 317.13 -6.99 -43.82 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.54 Total: 4.34 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -0.29 Total: 13.63 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.10 Total: -53.22 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.02 Total: -29.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.83 -6.99 -43.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527652613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.780 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds