Wall clock time and date at job start Mon Mar 30 2020 00:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 110.39054 * 2 1 4 4 C 1.54564 * 110.44045 * 237.44282 * 2 1 3 5 5 C 1.54502 * 102.14715 * 268.10826 * 4 2 1 6 6 C 1.52996 * 110.46076 * 225.77074 * 5 4 2 7 7 N 1.46505 * 110.36526 * 103.49062 * 5 4 2 8 8 C 1.34781 * 119.99511 * 183.14630 * 7 5 4 9 9 O 1.21584 * 119.99970 * 359.97438 * 8 7 5 10 10 N 1.34771 * 119.99489 * 180.02562 * 8 7 5 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47064 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47171 * 89.99544 * 16 14 12 18 18 H 1.48500 * 109.46632 * 209.99795 * 16 14 12 19 19 H 1.48494 * 109.47053 * 329.99231 * 16 14 12 20 20 C 1.51323 * 104.81882 * 344.65657 * 5 4 2 21 21 O 1.20832 * 125.09120 * 177.68399 * 20 5 4 22 22 O 1.34061 * 109.81499 * 357.68603 * 20 5 4 23 23 H 1.08992 * 109.47042 * 299.03322 * 1 2 3 24 24 H 1.09002 * 109.46586 * 59.03539 * 1 2 3 25 25 H 1.09001 * 109.46813 * 179.02849 * 1 2 3 26 26 H 1.09000 * 109.46765 * 180.96842 * 3 2 1 27 27 H 1.08998 * 109.46804 * 300.96672 * 3 2 1 28 28 H 1.09001 * 109.47489 * 60.96734 * 3 2 1 29 29 H 1.08999 * 110.87126 * 149.94715 * 4 2 1 30 30 H 1.09002 * 110.87356 * 26.27005 * 4 2 1 31 31 H 1.08995 * 109.47307 * 298.39822 * 6 5 4 32 32 H 1.09000 * 109.47313 * 58.39880 * 6 5 4 33 33 H 1.08999 * 109.46657 * 178.39505 * 6 5 4 34 34 H 0.97003 * 120.00113 * 3.14879 * 7 5 4 35 35 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 37 37 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 38 38 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0632 1.4341 0.0000 4 6 2.0699 -0.7794 -1.2207 5 6 2.2301 -2.2063 -0.6504 6 6 3.5824 -2.7958 -1.0563 7 7 1.1395 -3.0668 -1.1157 8 6 1.0541 -4.3402 -0.6823 9 8 1.8824 -4.7748 0.0945 10 7 0.0511 -5.1319 -1.1107 11 6 -0.0421 -6.5158 -0.6391 12 6 -1.2431 -7.1791 -1.2625 13 1 -1.8741 -6.6251 -1.9417 14 6 -1.5370 -8.4930 -0.9650 15 7 -0.7688 -9.1675 -0.1376 16 14 -3.0253 -9.3153 -1.7383 17 1 -2.6285 -9.9538 -3.0189 18 1 -3.5559 -10.3489 -0.8134 19 1 -4.0747 -8.2971 -1.9970 20 6 2.1603 -2.0331 0.8512 21 8 2.2067 -2.9322 1.6571 22 8 2.0393 -0.7326 1.1535 23 1 -0.3633 0.4987 0.8985 24 1 -0.3632 0.5288 -0.8812 25 1 -0.3633 -1.0275 -0.0174 26 1 3.1529 1.4166 -0.0174 27 1 1.6941 1.9589 -0.8812 28 1 1.7223 1.9485 0.8985 29 1 3.0315 -0.3796 -1.5424 30 1 1.3497 -0.7669 -2.0389 31 1 3.6370 -2.8655 -2.1426 32 1 4.3833 -2.1518 -0.6929 33 1 3.6903 -3.7898 -0.6224 34 1 0.4790 -2.7201 -1.7358 35 1 -0.6094 -4.7853 -1.7307 36 1 0.8604 -7.0577 -0.9222 37 1 -0.1454 -6.5238 0.4459 38 1 -0.9757 -10.0917 0.0721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527652613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:58 Heat of formation + Delta-G solvation = -140.342099 kcal Electronic energy + Delta-G solvation = -21617.270976 eV Core-core repulsion = 18265.911122 eV Total energy + Delta-G solvation = -3351.359854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.68645 -40.57551 -38.85861 -36.82354 -35.90189 -34.49171 -34.26826 -32.18866 -29.02975 -28.41464 -28.00595 -25.18971 -24.71435 -22.54252 -22.30945 -20.61367 -19.65588 -18.34936 -17.98851 -17.78162 -17.10861 -16.81406 -16.33474 -15.94497 -15.73991 -15.22562 -14.98139 -14.65224 -14.32539 -14.16211 -14.02296 -13.70183 -13.48587 -13.29067 -13.05519 -12.99419 -12.88479 -12.70125 -12.68159 -12.51576 -12.21308 -12.06771 -11.48491 -11.47399 -11.41795 -10.91202 -10.79170 -10.18867 -9.65478 -8.27935 -6.45233 0.87271 1.43000 1.46649 1.57555 1.88196 2.11635 2.26904 2.39569 2.88036 3.06962 3.13300 3.49048 3.53053 3.75293 3.94229 4.08512 4.53696 4.59679 4.65924 4.69493 4.78206 4.83110 4.93204 4.94577 5.07850 5.19682 5.20617 5.26528 5.33948 5.40871 5.48581 5.69431 5.82595 5.85658 6.21121 6.50007 6.67160 7.24329 7.31125 7.77535 8.84686 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.004197 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.147693 B = 6669.734130 C = 6934.087840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 C -0.138 4.138 4 C -0.131 4.131 5 C 0.140 3.860 6 C -0.153 4.153 7 N -0.715 5.715 8 C 0.681 3.319 9 O -0.615 6.615 10 N -0.722 5.722 11 C 0.288 3.712 12 C -0.553 4.553 13 H 0.087 0.913 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.989 3.011 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.254 1.254 20 C 0.459 3.541 21 O -0.475 6.475 22 O -0.361 6.361 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.418 0.582 35 H 0.405 0.595 36 H -0.015 1.015 37 H -0.024 1.024 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 25.640 -9.338 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.055 3.945 3 C -0.194 4.194 4 C -0.168 4.168 5 C 0.050 3.950 6 C -0.211 4.211 7 N -0.378 5.378 8 C 0.381 3.619 9 O -0.493 6.493 10 N -0.377 5.377 11 C 0.165 3.835 12 C -0.591 4.591 13 H 0.105 0.895 14 C -0.198 4.198 15 N -0.572 5.572 16 Si 0.812 3.188 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.177 1.177 20 C 0.297 3.703 21 O -0.357 6.357 22 O -0.279 6.279 23 H 0.084 0.916 24 H 0.140 0.860 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.257 0.743 35 H 0.240 0.760 36 H 0.003 0.997 37 H -0.006 1.006 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.327 24.745 -7.941 26.200 hybrid contribution -0.954 -1.053 0.048 1.422 sum 2.372 23.693 -7.892 25.085 Atomic orbital electron populations 1.22367 0.92198 1.02686 1.05422 1.23606 0.95333 0.94180 0.81351 1.21937 1.02504 0.90053 1.04948 1.23550 1.07248 0.87685 0.98287 1.21518 0.90098 0.93471 0.89885 1.22100 0.93638 1.01674 1.03720 1.44843 1.31646 1.09416 1.51885 1.16466 0.82498 0.81911 0.81034 1.90958 1.43785 1.75026 1.39579 1.45249 1.28938 1.13272 1.50197 1.18357 0.95791 0.76764 0.92610 1.21602 1.11021 0.97778 1.28722 0.89545 1.26129 1.00586 0.97833 0.95268 1.70168 1.40385 1.10919 1.35709 0.85097 0.77862 0.78009 0.77851 1.19375 1.21148 1.17735 1.24085 0.71947 0.81569 0.92654 1.90808 1.43918 1.42464 1.58508 1.87085 1.77123 1.20228 1.43473 0.91594 0.85980 0.93949 0.90759 0.86434 0.91624 0.84452 0.84133 0.88315 0.89440 0.94159 0.74282 0.76011 0.99710 1.00578 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 8.77 71.99 0.63 -1.59 16 2 C 0.09 1.32 1.24 -10.26 -0.01 1.31 16 3 C -0.14 -1.02 8.92 71.98 0.64 -0.38 16 4 C -0.13 -1.44 5.54 31.64 0.18 -1.27 16 5 C 0.14 3.54 0.96 3.56 0.00 3.54 16 6 C -0.15 -3.99 8.39 71.98 0.60 -3.38 16 7 N -0.72 -20.25 5.15 -438.18 -2.26 -22.50 16 8 C 0.68 29.57 7.98 179.05 1.43 31.00 16 9 O -0.61 -33.82 12.16 17.79 0.22 -33.60 16 10 N -0.72 -32.10 5.55 -482.29 -2.68 -34.78 16 11 C 0.29 16.68 5.43 85.63 0.46 17.14 16 12 C -0.55 -30.87 9.28 25.60 0.24 -30.63 16 13 H 0.09 4.29 7.60 -2.91 -0.02 4.27 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 16 Si 0.99 42.98 29.54 68.60 2.03 45.01 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 20 C 0.46 16.30 7.11 71.43 0.51 16.81 16 21 O -0.48 -23.36 15.50 29.05 0.45 -22.91 16 22 O -0.36 -10.06 10.48 -50.13 -0.53 -10.59 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 26 H 0.07 0.52 8.13 -2.39 -0.02 0.50 16 27 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.14 0.75 7.60 -2.39 -0.02 0.74 16 30 H 0.14 0.58 7.40 -2.39 -0.02 0.56 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.52 6.28 -2.39 -0.01 1.50 16 34 H 0.42 7.79 8.21 -92.71 -0.76 7.03 16 35 H 0.40 14.38 8.33 -92.71 -0.77 13.61 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H -0.02 -1.58 8.14 -2.39 -0.02 -1.60 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -90.96 317.13 2.21 -88.75 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -0.45 Total: 15.45 kcal Atomic # 6 Polarization: 27.94 SS G_CDS: 5.14 Total: 33.08 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -4.65 Total: -115.20 kcal Atomic # 8 Polarization: -67.24 SS G_CDS: 0.14 Total: -67.10 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -90.96 2.21 -88.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527652613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.593 kcal (2) G-P(sol) polarization free energy of solvation -90.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds