Wall clock time and date at job start Mon Mar 30 2020 00:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.48190 * 2 1 4 4 O 1.21286 * 119.99689 * 95.02457 * 3 2 1 5 5 N 1.34772 * 120.00070 * 275.02328 * 3 2 1 6 6 C 1.46495 * 120.00096 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47059 * 179.97438 * 6 5 3 8 8 O 1.21287 * 120.00209 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99890 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00188 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99551 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00379 * 180.02562 * 10 9 7 13 13 N 1.31419 * 119.99855 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00191 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47287 * 59.99673 * 14 12 10 16 16 H 1.48504 * 109.47192 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47236 * 299.99332 * 14 12 10 18 18 C 1.53096 * 109.47781 * 120.02258 * 2 1 3 19 19 C 1.53181 * 109.16280 * 177.60025 * 18 2 1 20 20 C 1.53176 * 109.03564 * 303.02405 * 19 18 2 21 21 C 1.53090 * 109.16668 * 56.97896 * 20 19 18 22 22 O 1.42902 * 109.41282 * 302.38812 * 21 20 19 23 23 H 1.09005 * 109.46948 * 299.97797 * 1 2 3 24 24 H 1.09002 * 109.46774 * 59.97689 * 1 2 3 25 25 H 1.08995 * 109.47509 * 179.97438 * 1 2 3 26 26 H 0.97005 * 119.99535 * 359.97438 * 5 3 2 27 27 H 1.09001 * 109.47253 * 299.99904 * 6 5 3 28 28 H 1.08996 * 109.47404 * 59.99502 * 6 5 3 29 29 H 0.97000 * 119.99960 * 0.02562 * 9 7 6 30 30 H 0.96993 * 120.00112 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.52300 * 297.50977 * 18 2 1 32 32 H 1.09004 * 109.51858 * 57.69704 * 18 2 1 33 33 H 1.09005 * 109.54183 * 62.88808 * 19 18 2 34 34 H 1.08991 * 109.54342 * 183.15360 * 19 18 2 35 35 H 1.09005 * 109.52173 * 297.06763 * 20 19 18 36 36 H 1.08998 * 109.57285 * 176.91739 * 20 19 18 37 37 H 1.09003 * 109.47962 * 182.41257 * 21 20 19 38 38 H 1.08998 * 109.49361 * 62.37633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3216 1.9617 1.0464 5 7 2.1610 2.0901 -1.1627 6 6 2.6501 3.4710 -1.1627 7 6 2.7009 3.9859 -2.5781 8 8 2.3614 3.2700 -3.4964 9 7 3.1225 5.2423 -2.8234 10 6 3.1692 5.7106 -4.1111 11 1 2.8676 5.0728 -4.9289 12 6 3.6044 7.0056 -4.3641 13 7 3.9708 7.7819 -3.3690 14 14 3.6672 7.6439 -6.1185 15 1 2.3059 7.6009 -6.7100 16 1 4.1625 9.0439 -6.1186 17 1 4.5830 6.7945 -6.9218 18 6 2.0405 -0.7222 1.2497 19 6 3.5711 -0.7706 1.2125 20 6 4.0178 -1.4597 -0.0805 21 6 3.4310 -0.7091 -1.2788 22 8 2.0068 -0.6742 -1.1663 23 1 -0.3633 0.5135 0.8902 24 1 -0.3633 0.5142 -0.8898 25 1 -0.3634 -1.0276 -0.0005 26 1 1.9303 1.6572 -1.9995 27 1 1.9783 4.0945 -0.5728 28 1 3.6496 3.5025 -0.7290 29 1 3.3937 5.8150 -2.0890 30 1 4.2742 8.6861 -3.5456 31 1 1.7146 -0.1842 2.1399 32 1 1.6443 -1.7374 1.2710 33 1 3.9688 0.2439 1.2411 34 1 3.9391 -1.3323 2.0709 35 1 3.6617 -2.4900 -0.0860 36 1 5.1060 -1.4503 -0.1422 37 1 3.7104 -1.2201 -2.2002 38 1 3.8193 0.3092 -1.2957 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539455539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:44 Heat of formation + Delta-G solvation = -132.777504 kcal Electronic energy + Delta-G solvation = -21402.242183 eV Core-core repulsion = 18051.210355 eV Total energy + Delta-G solvation = -3351.031828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84933 -38.57286 -37.69479 -34.63892 -33.94548 -33.34379 -32.96392 -31.38917 -28.18969 -27.62610 -24.84460 -24.35311 -23.01784 -21.27741 -19.78831 -19.27385 -18.10198 -17.61059 -16.29944 -15.79606 -15.70999 -15.33346 -14.80718 -14.59011 -14.51215 -14.23785 -14.06324 -13.70626 -13.51880 -12.85463 -12.48606 -12.47087 -12.23503 -12.10434 -12.03877 -11.86225 -11.64127 -11.18157 -11.10817 -10.91189 -10.61043 -10.51381 -10.32191 -9.94094 -9.63705 -9.25445 -8.80871 -8.64120 -8.11325 -6.52481 -3.94631 2.68305 3.13141 3.18529 3.21322 3.27237 3.65507 3.72536 4.10328 4.49891 4.69772 4.75926 4.80546 4.85876 4.91479 5.13163 5.15876 5.36637 5.43591 5.51229 5.57318 5.67972 5.76449 5.80890 5.84531 5.91436 5.92042 5.95850 6.04747 6.05686 6.21088 6.64406 6.97783 7.44888 7.78854 7.90508 8.37319 8.44567 9.03435 9.37748 9.85827 10.64358 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034971 B = 0.003966 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.471134 B = 7058.493757 C = 7157.289204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.103 3.897 3 C 0.493 3.507 4 O -0.544 6.544 5 N -0.699 5.699 6 C 0.106 3.894 7 C 0.427 3.573 8 O -0.595 6.595 9 N -0.549 5.549 10 C -0.306 4.306 11 H 0.105 0.895 12 C 0.026 3.974 13 N -0.895 5.895 14 Si 0.934 3.066 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.272 1.272 18 C -0.126 4.126 19 C -0.128 4.128 20 C -0.155 4.155 21 C 0.050 3.950 22 O -0.363 6.363 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.416 0.584 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.396 0.604 30 H 0.275 0.725 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 -14.798 8.172 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 C 0.278 3.722 4 O -0.422 6.422 5 N -0.353 5.353 6 C -0.022 4.022 7 C 0.213 3.787 8 O -0.481 6.481 9 N -0.184 5.184 10 C -0.435 4.435 11 H 0.123 0.877 12 C -0.177 4.177 13 N -0.535 5.535 14 Si 0.761 3.239 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.164 4.164 19 C -0.166 4.166 20 C -0.193 4.193 21 C -0.027 4.027 22 O -0.282 6.282 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.255 0.745 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.229 0.771 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.232 -14.721 8.135 16.966 hybrid contribution 0.419 0.777 -0.613 1.075 sum -1.813 -13.943 7.522 15.946 Atomic orbital electron populations 1.21757 0.90335 1.03785 1.03583 1.21775 0.96513 0.87991 0.87724 1.21158 0.78269 0.88896 0.83871 1.90675 1.50240 1.69825 1.31458 1.45824 1.65383 1.13912 1.10201 1.20987 1.00711 0.83278 0.97193 1.19727 0.85600 0.83954 0.89437 1.90509 1.54859 1.57290 1.45446 1.41793 1.55978 1.10965 1.09640 1.19688 1.41926 0.97350 0.84542 0.87710 1.25322 0.96510 0.95935 0.99887 1.69607 1.43279 1.09014 1.31639 0.85868 0.78944 0.77630 0.81503 1.19756 1.20845 1.19762 1.21970 0.96445 1.00743 0.97277 1.21654 0.95495 1.01884 0.97524 1.22192 1.01182 1.00333 0.95579 1.22763 0.80606 1.00630 0.98700 1.88008 1.21583 1.76613 1.42005 0.90378 0.90981 0.90549 0.74487 0.89810 0.89952 0.77067 0.91530 0.89714 0.90453 0.90891 0.91315 0.91058 0.90825 0.88179 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.83 37.16 0.33 -1.18 16 2 C 0.10 1.34 1.04 -91.72 -0.10 1.24 16 3 C 0.49 7.92 4.82 -10.99 -0.05 7.87 16 4 O -0.54 -9.93 15.13 5.55 0.08 -9.84 16 5 N -0.70 -12.06 4.59 -61.48 -0.28 -12.34 16 6 C 0.11 1.98 6.15 -5.20 -0.03 1.95 16 7 C 0.43 9.86 7.85 -10.98 -0.09 9.77 16 8 O -0.59 -15.35 15.24 5.55 0.08 -15.27 16 9 N -0.55 -13.64 5.29 -10.96 -0.06 -13.69 16 10 C -0.31 -8.31 9.68 -14.93 -0.14 -8.45 16 11 H 0.11 2.96 7.16 -52.48 -0.38 2.59 16 12 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 13 N -0.90 -23.87 13.05 55.50 0.72 -23.14 16 14 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 C -0.13 -1.43 4.58 -26.59 -0.12 -1.55 16 19 C -0.13 -1.44 5.75 -26.55 -0.15 -1.59 16 20 C -0.16 -1.60 6.14 -26.59 -0.16 -1.76 16 21 C 0.05 0.61 6.48 37.20 0.24 0.85 16 22 O -0.36 -4.86 9.58 -35.23 -0.34 -5.20 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.42 7.42 6.86 -40.82 -0.28 7.14 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 31 H 0.08 0.98 7.78 -51.93 -0.40 0.57 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.99 6.72 -51.93 -0.35 0.64 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.82 6.51 -51.93 -0.34 0.48 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -30.40 313.22 -5.90 -36.29 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -5.43 Total: 15.25 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.38 Total: 7.73 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.38 Total: -49.18 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.17 Total: -30.31 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.40 -5.90 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539455539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.483 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds