Wall clock time and date at job start Mon Mar 30 2020 00:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.48190 * 2 1 4 4 O 1.21286 * 119.99689 * 95.02457 * 3 2 1 5 5 N 1.34772 * 120.00070 * 275.02328 * 3 2 1 6 6 C 1.46495 * 120.00096 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47059 * 179.97438 * 6 5 3 8 8 O 1.21287 * 120.00209 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99890 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00188 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99551 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00379 * 180.02562 * 10 9 7 13 13 N 1.31419 * 119.99855 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00191 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47287 * 59.99673 * 14 12 10 16 16 H 1.48504 * 109.47192 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47236 * 299.99332 * 14 12 10 18 18 C 1.53096 * 109.47781 * 120.02258 * 2 1 3 19 19 C 1.53181 * 109.16280 * 177.60025 * 18 2 1 20 20 C 1.53176 * 109.03564 * 303.02405 * 19 18 2 21 21 C 1.53090 * 109.16668 * 56.97896 * 20 19 18 22 22 O 1.42902 * 109.41282 * 302.38812 * 21 20 19 23 23 H 1.09005 * 109.46948 * 299.97797 * 1 2 3 24 24 H 1.09002 * 109.46774 * 59.97689 * 1 2 3 25 25 H 1.08995 * 109.47509 * 179.97438 * 1 2 3 26 26 H 0.97005 * 119.99535 * 359.97438 * 5 3 2 27 27 H 1.09001 * 109.47253 * 299.99904 * 6 5 3 28 28 H 1.08996 * 109.47404 * 59.99502 * 6 5 3 29 29 H 0.97000 * 119.99960 * 0.02562 * 9 7 6 30 30 H 0.96993 * 120.00112 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.52300 * 297.50977 * 18 2 1 32 32 H 1.09004 * 109.51858 * 57.69704 * 18 2 1 33 33 H 1.09005 * 109.54183 * 62.88808 * 19 18 2 34 34 H 1.08991 * 109.54342 * 183.15360 * 19 18 2 35 35 H 1.09005 * 109.52173 * 297.06763 * 20 19 18 36 36 H 1.08998 * 109.57285 * 176.91739 * 20 19 18 37 37 H 1.09003 * 109.47962 * 182.41257 * 21 20 19 38 38 H 1.08998 * 109.49361 * 62.37633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3216 1.9617 1.0464 5 7 2.1610 2.0901 -1.1627 6 6 2.6501 3.4710 -1.1627 7 6 2.7009 3.9859 -2.5781 8 8 2.3614 3.2700 -3.4964 9 7 3.1225 5.2423 -2.8234 10 6 3.1692 5.7106 -4.1111 11 1 2.8676 5.0728 -4.9289 12 6 3.6044 7.0056 -4.3641 13 7 3.9708 7.7819 -3.3690 14 14 3.6672 7.6439 -6.1185 15 1 2.3059 7.6009 -6.7100 16 1 4.1625 9.0439 -6.1186 17 1 4.5830 6.7945 -6.9218 18 6 2.0405 -0.7222 1.2497 19 6 3.5711 -0.7706 1.2125 20 6 4.0178 -1.4597 -0.0805 21 6 3.4310 -0.7091 -1.2788 22 8 2.0068 -0.6742 -1.1663 23 1 -0.3633 0.5135 0.8902 24 1 -0.3633 0.5142 -0.8898 25 1 -0.3634 -1.0276 -0.0005 26 1 1.9303 1.6572 -1.9995 27 1 1.9783 4.0945 -0.5728 28 1 3.6496 3.5025 -0.7290 29 1 3.3937 5.8150 -2.0890 30 1 4.2742 8.6861 -3.5456 31 1 1.7146 -0.1842 2.1399 32 1 1.6443 -1.7374 1.2710 33 1 3.9688 0.2439 1.2411 34 1 3.9391 -1.3323 2.0709 35 1 3.6617 -2.4900 -0.0860 36 1 5.1060 -1.4503 -0.1422 37 1 3.7104 -1.2201 -2.2002 38 1 3.8193 0.3092 -1.2957 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001539455539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:44 Heat of formation + Delta-G solvation = -154.971864 kcal Electronic energy + Delta-G solvation = -21403.204603 eV Core-core repulsion = 18051.210355 eV Total energy + Delta-G solvation = -3351.994248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.00476 -40.31052 -39.03236 -36.32955 -35.52465 -34.45231 -33.93330 -33.39241 -29.61348 -28.70628 -26.64972 -25.36205 -24.17187 -22.31267 -21.42510 -20.71373 -20.02470 -18.86682 -17.49742 -17.34387 -17.04671 -16.73321 -16.50524 -15.97670 -15.84797 -15.61283 -15.20429 -15.02822 -14.98928 -14.03674 -13.85426 -13.63649 -13.55718 -13.34418 -13.22099 -13.11479 -12.92340 -12.89601 -12.48983 -12.14822 -12.11539 -11.79549 -11.58421 -11.54532 -10.96249 -10.60915 -10.38223 -10.23941 -10.10944 -8.52766 -6.03405 1.36236 1.41593 1.42008 1.52835 1.87828 1.90942 2.29150 2.65454 3.07105 3.14061 3.47175 3.72859 3.79565 3.90722 3.97244 4.18317 4.25382 4.33328 4.36182 4.44805 4.55995 4.67101 4.72484 4.83543 4.89383 4.99419 5.07238 5.09600 5.16503 5.21477 5.34930 5.36592 5.88584 5.96602 6.41945 6.47945 7.00886 7.03979 7.40890 7.91417 8.63907 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034971 B = 0.003966 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.471134 B = 7058.493757 C = 7157.289204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.103 3.897 3 C 0.494 3.506 4 O -0.567 6.567 5 N -0.702 5.702 6 C 0.119 3.881 7 C 0.431 3.569 8 O -0.623 6.623 9 N -0.558 5.558 10 C -0.339 4.339 11 H 0.086 0.914 12 C -0.009 4.009 13 N -0.916 5.916 14 Si 0.997 3.003 15 H -0.270 1.270 16 H -0.271 1.271 17 H -0.269 1.269 18 C -0.124 4.124 19 C -0.130 4.130 20 C -0.148 4.148 21 C 0.042 3.958 22 O -0.369 6.369 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.414 0.586 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.399 0.601 30 H 0.280 0.720 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 -15.963 8.462 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 C 0.281 3.719 4 O -0.446 6.446 5 N -0.356 5.356 6 C -0.009 4.009 7 C 0.218 3.782 8 O -0.511 6.511 9 N -0.193 5.193 10 C -0.468 4.468 11 H 0.104 0.896 12 C -0.210 4.210 13 N -0.556 5.556 14 Si 0.820 3.180 15 H -0.195 1.195 16 H -0.195 1.195 17 H -0.195 1.195 18 C -0.162 4.162 19 C -0.168 4.168 20 C -0.186 4.186 21 C -0.034 4.034 22 O -0.288 6.288 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.252 0.748 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.233 0.767 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.394 -15.894 8.451 18.159 hybrid contribution 0.475 1.106 -0.667 1.376 sum -1.920 -14.787 7.784 16.821 Atomic orbital electron populations 1.21819 0.88743 1.05368 1.03471 1.21938 0.97682 0.85768 0.88624 1.21842 0.77217 0.90042 0.82840 1.90659 1.51189 1.70714 1.32082 1.45872 1.65774 1.13288 1.10693 1.20809 1.01715 0.84363 0.94025 1.20382 0.83769 0.83108 0.90898 1.90483 1.55635 1.57894 1.47055 1.41840 1.56663 1.11671 1.09168 1.19709 1.43912 0.98104 0.85107 0.89593 1.26129 0.95447 0.95535 1.03850 1.69673 1.43195 1.09378 1.33331 0.84925 0.78950 0.77418 0.76681 1.19486 1.19536 1.19450 1.22009 0.96464 1.01755 0.95930 1.21672 0.95545 1.00612 0.98926 1.22160 1.01774 1.00703 0.93934 1.22890 0.80227 0.99764 1.00509 1.88007 1.22183 1.76292 1.42365 0.89674 0.91955 0.88120 0.74782 0.88736 0.88963 0.76727 0.91009 0.90094 0.87868 0.93848 0.89287 0.89214 0.89784 0.86849 0.94855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.83 71.98 0.64 -2.12 16 2 C 0.10 2.52 1.04 -11.51 -0.01 2.51 16 3 C 0.49 15.68 4.82 87.66 0.42 16.10 16 4 O -0.57 -20.56 15.13 -3.05 -0.05 -20.61 16 5 N -0.70 -24.35 4.59 -466.81 -2.14 -26.49 16 6 C 0.12 4.45 6.15 85.63 0.53 4.98 16 7 C 0.43 20.27 7.85 87.66 0.69 20.96 16 8 O -0.62 -32.85 15.24 -3.05 -0.05 -32.90 16 9 N -0.56 -28.29 5.29 -306.99 -1.62 -29.91 16 10 C -0.34 -18.78 9.68 84.04 0.81 -17.96 16 11 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 12 C -0.01 -0.46 5.50 84.92 0.47 0.01 16 13 N -0.92 -48.68 13.05 21.66 0.28 -48.40 16 14 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 18 C -0.12 -2.52 4.58 30.69 0.14 -2.38 16 19 C -0.13 -2.69 5.75 30.71 0.18 -2.52 16 20 C -0.15 -2.73 6.14 30.68 0.19 -2.55 16 21 C 0.04 1.00 6.48 72.01 0.47 1.46 16 22 O -0.37 -9.37 9.58 -148.98 -1.43 -10.80 16 23 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.41 14.94 6.86 -92.70 -0.64 14.31 16 27 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 29 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 30 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.08 1.72 7.78 -2.39 -0.02 1.70 16 32 H 0.10 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.04 1.15 6.72 -2.38 -0.02 1.14 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.03 0.94 6.51 -2.39 -0.02 0.93 16 Total: -1.00 -64.96 313.22 1.25 -63.70 By element: Atomic # 1 Polarization: 43.43 SS G_CDS: -0.28 Total: 43.14 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 4.51 Total: 18.50 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.48 Total: -104.80 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: -1.52 Total: -64.31 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -64.96 1.25 -63.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539455539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.267 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds