Wall clock time and date at job start Mon Mar 30 2020 02:18:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09001 * 109.47135 * 2 1
4 4 C 1.53004 * 109.46796 * 119.99721 * 2 1 3
5 5 C 1.53000 * 109.47255 * 185.00425 * 4 2 1
6 6 N 1.46503 * 109.47318 * 179.97438 * 5 4 2
7 7 C 1.36935 * 119.99780 * 179.97438 * 6 5 4
8 8 H 1.07998 * 120.00485 * 359.97438 * 7 6 5
9 9 C 1.38817 * 119.99824 * 180.02562 * 7 6 5
10 10 N 1.31618 * 119.99807 * 0.02562 * 9 7 6
11 11 Si 1.86799 * 119.99947 * 179.97438 * 9 7 6
12 12 H 1.48494 * 109.47068 * 90.00102 * 11 9 7
13 13 H 1.48498 * 109.46831 * 210.00122 * 11 9 7
14 14 H 1.48496 * 109.47131 * 329.99547 * 11 9 7
15 15 N 1.46496 * 109.47446 * 239.99570 * 2 1 3
16 16 C 1.34767 * 120.00060 * 84.99990 * 15 2 1
17 17 O 1.21736 * 120.00290 * 0.02562 * 16 15 2
18 18 C 1.46382 * 120.00281 * 179.97438 * 16 15 2
19 19 C 1.33981 * 119.22960 * 0.02562 * 18 16 15
20 20 O 1.34994 * 121.68684 * 180.36650 * 19 18 16
21 21 C 1.43252 * 116.76481 * 342.82229 * 20 19 18
22 22 C 1.53546 * 108.08831 * 45.48898 * 21 20 19
23 23 O 1.36218 * 119.23326 * 180.02562 * 18 16 15
24 24 H 1.09001 * 109.47135 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47720 * 300.00690 * 1 2 3
26 26 H 1.09006 * 109.47034 * 60.00333 * 1 2 3
27 27 H 1.09001 * 109.46861 * 305.00089 * 4 2 1
28 28 H 1.09002 * 109.47378 * 64.99869 * 4 2 1
29 29 H 1.09001 * 109.46912 * 299.99633 * 5 4 2
30 30 H 1.09002 * 109.47381 * 59.99446 * 5 4 2
31 31 H 0.96997 * 119.99957 * 359.97438 * 6 5 4
32 32 H 0.96998 * 120.00042 * 179.97438 * 10 9 7
33 33 H 0.97005 * 119.99961 * 264.99959 * 15 2 1
34 34 H 1.07998 * 119.15485 * 0.35017 * 19 18 16
35 35 H 1.08996 * 109.73732 * 285.83605 * 21 20 19
36 36 H 1.09005 * 109.73644 * 165.13344 * 21 20 19
37 37 H 1.09004 * 109.75354 * 182.21784 * 22 21 20
38 38 H 1.08992 * 109.75815 * 61.47136 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 3.5647 -0.6132 1.3139
6 7 4.0530 -1.3033 2.5105
7 6 5.3950 -1.3399 2.7800
8 1 6.0936 -0.8605 2.1103
9 6 5.8577 -1.9942 3.9135
10 7 5.0064 -2.5798 4.7289
11 14 7.6885 -2.0448 4.2808
12 1 8.0596 -0.8704 5.1104
13 1 8.0112 -3.2931 5.0176
14 1 8.4502 -2.0113 3.0065
15 7 2.0184 -0.6907 -1.1961
16 6 2.1471 -0.0185 -2.3570
17 8 1.8580 1.1628 -2.4117
18 6 2.6357 -0.7084 -3.5520
19 6 2.9499 -2.0085 -3.4743
20 8 3.4116 -2.6915 -4.5433
21 6 3.1994 -2.0973 -5.8293
22 6 3.5728 -0.6109 -5.7351
23 8 2.7603 -0.0137 -4.7171
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5139 0.8899
26 1 -0.3633 0.5138 -0.8901
27 1 1.6052 -0.2616 2.1370
28 1 1.7515 -1.7715 1.2058
29 1 3.9994 -1.0728 0.4263
30 1 3.8531 0.4371 1.3575
31 1 3.4256 -1.7342 3.1118
32 1 5.3297 -3.0373 5.5207
33 1 2.2491 -1.6319 -1.1524
34 1 2.8309 -2.5232 -2.5324
35 1 2.1515 -2.1965 -6.1123
36 1 3.8297 -2.5889 -6.5705
37 1 3.3839 -0.1223 -6.6911
38 1 4.6257 -0.5114 -5.4716
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001568602215.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:18:54
Heat of formation + Delta-G solvation = -82.001339 kcal
Electronic energy + Delta-G solvation = -20684.090807 eV
Core-core repulsion = 17335.260798 eV
Total energy + Delta-G solvation = -3348.830009 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.30015 -39.54830 -37.30789 -36.35043 -34.39199 -33.00397 -31.55531 -30.59963
-28.70475 -27.87160 -25.63477 -24.05747 -22.59529 -21.45523 -20.75022 -19.71590
-18.58951 -18.43983 -17.05211 -16.69506 -15.99399 -15.67515 -15.13642 -14.82093
-14.67958 -14.43752 -14.28778 -13.81185 -13.66931 -13.43255 -13.27509 -12.83959
-12.60785 -12.29583 -11.86502 -11.31756 -11.21081 -11.03657 -10.92512 -10.79341
-10.64787 -10.57990 -10.04868 -9.89321 -9.70436 -9.09952 -8.86835 -8.40792
-6.93038 -5.77186 -3.05924 1.15771 2.47792 2.87964 3.22390 3.43884
3.49087 3.50576 3.62080 3.98937 4.49424 4.54603 4.58300 4.62673
4.87759 4.95412 5.00445 5.17465 5.22663 5.34088 5.55046 5.60357
5.71555 5.74973 5.92150 6.02305 6.22027 6.27524 6.32879 6.43578
6.54335 6.80375 6.85279 7.04881 7.49825 7.70282 8.18728 8.41934
9.53120 10.10497 10.45276 11.45759
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.018308 B = 0.004131 C = 0.003598
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1529.035495 B = 6775.947686 C = 7779.967915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.148 3.852
3 H 0.092 0.908
4 C -0.135 4.135
5 C 0.153 3.847
6 N -0.734 5.734
7 C -0.240 4.240
8 H 0.070 0.930
9 C -0.014 4.014
10 N -0.934 5.934
11 Si 0.907 3.093
12 H -0.289 1.289
13 H -0.291 1.291
14 H -0.282 1.282
15 N -0.712 5.712
16 C 0.576 3.424
17 O -0.526 6.526
18 C -0.070 4.070
19 C 0.007 3.993
20 O -0.299 6.299
21 C 0.014 3.986
22 C 0.018 3.982
23 O -0.286 6.286
24 H 0.057 0.943
25 H 0.068 0.932
26 H 0.058 0.942
27 H 0.082 0.918
28 H 0.069 0.931
29 H 0.018 0.982
30 H 0.019 0.981
31 H 0.384 0.616
32 H 0.255 0.745
33 H 0.399 0.601
34 H 0.181 0.819
35 H 0.081 0.919
36 H 0.121 0.879
37 H 0.121 0.879
38 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.954 0.161 -20.138 21.652
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.044 3.956
3 H 0.110 0.890
4 C -0.174 4.174
5 C 0.025 3.975
6 N -0.378 5.378
7 C -0.371 4.371
8 H 0.088 0.912
9 C -0.210 4.210
10 N -0.583 5.583
11 Si 0.738 3.262
12 H -0.217 1.217
13 H -0.217 1.217
14 H -0.208 1.208
15 N -0.366 5.366
16 C 0.363 3.637
17 O -0.403 6.403
18 C -0.119 4.119
19 C -0.059 4.059
20 O -0.211 6.211
21 C -0.062 4.062
22 C -0.059 4.059
23 O -0.200 6.200
24 H 0.076 0.924
25 H 0.087 0.913
26 H 0.077 0.923
27 H 0.100 0.900
28 H 0.088 0.912
29 H 0.036 0.964
30 H 0.037 0.963
31 H 0.217 0.783
32 H 0.065 0.935
33 H 0.235 0.765
34 H 0.197 0.803
35 H 0.099 0.901
36 H 0.139 0.861
37 H 0.139 0.861
38 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -7.966 1.044 -20.242 21.778
hybrid contribution 1.055 -0.731 0.317 1.322
sum -6.911 0.313 -19.925 21.091
Atomic orbital electron populations
1.22176 0.95205 1.02137 1.02503 1.21038 0.93700 0.97814 0.83081
0.89020 1.22083 0.98102 1.00851 0.96316 1.20651 0.90334 0.95758
0.90757 1.42363 1.05388 1.65020 1.25048 1.19236 0.83839 1.28509
1.05514 0.91237 1.24736 0.97709 1.00858 0.97652 1.69656 1.32803
1.40700 1.15130 0.86188 0.85089 0.77043 0.77886 1.21684 1.21744
1.20767 1.45961 1.67440 1.14045 1.09177 1.17072 0.78281 0.86430
0.81928 1.90837 1.49623 1.15117 1.84750 1.20449 1.11499 0.90608
0.89302 1.23204 0.99709 0.90685 0.92305 1.86122 1.74868 1.46397
1.13758 1.23726 1.03415 0.94613 0.84409 1.23675 0.95757 0.93920
0.92502 1.86425 1.66861 1.45417 1.21300 0.92418 0.91305 0.92286
0.89957 0.91250 0.96407 0.96301 0.78299 0.93512 0.76478 0.80268
0.90100 0.86090 0.86090 0.90324
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16
2 C 0.15 1.99 2.57 -67.93 -0.17 1.81 16
3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16
4 C -0.14 -2.03 4.87 -26.73 -0.13 -2.16 16
5 C 0.15 3.02 6.15 -4.04 -0.02 3.00 16
6 N -0.73 -18.51 5.60 -59.91 -0.34 -18.84 16
7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16
8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16
9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16
10 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16
11 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16
12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
13 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16
14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
15 N -0.71 -9.08 4.46 -55.21 -0.25 -9.33 16
16 C 0.58 8.61 7.69 -12.99 -0.10 8.51 16
17 O -0.53 -9.83 16.58 -10.06 -0.17 -10.00 16
18 C -0.07 -0.91 6.61 -37.80 -0.25 -1.16 16
19 C 0.01 0.08 10.57 29.24 0.31 0.39 16
20 O -0.30 -3.05 10.47 -30.81 -0.32 -3.38 16
21 C 0.01 0.10 7.29 37.44 0.27 0.37 16
22 C 0.02 0.14 7.31 37.44 0.27 0.42 16
23 O -0.29 -3.78 10.28 -45.77 -0.47 -4.25 16
24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
29 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16
30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.38 10.05 7.67 -40.82 -0.31 9.73 16
32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
33 H 0.40 4.23 6.44 -40.82 -0.26 3.97 16
34 H 0.18 1.54 6.08 -52.49 -0.32 1.22 16
35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16
37 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
LS Contribution 322.45 15.07 4.86 4.86
Total: -1.00 -35.32 322.45 -6.16 -41.48
By element:
Atomic # 1 Polarization: 12.67 SS G_CDS: -5.46 Total: 7.20 kcal
Atomic # 6 Polarization: 1.97 SS G_CDS: 0.28 Total: 2.25 kcal
Atomic # 7 Polarization: -55.78 SS G_CDS: 0.14 Total: -55.64 kcal
Atomic # 8 Polarization: -16.67 SS G_CDS: -0.96 Total: -17.63 kcal
Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -35.32 -6.16 -41.48 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568602215.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.521 kcal
(2) G-P(sol) polarization free energy of solvation -35.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.838 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds