Wall clock time and date at job start Mon Mar 30 2020 02:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47135 * 2 1 4 4 C 1.53004 * 109.46796 * 119.99721 * 2 1 3 5 5 C 1.53000 * 109.47255 * 185.00425 * 4 2 1 6 6 N 1.46503 * 109.47318 * 179.97438 * 5 4 2 7 7 C 1.36935 * 119.99780 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00485 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99824 * 180.02562 * 7 6 5 10 10 N 1.31618 * 119.99807 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99947 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47068 * 90.00102 * 11 9 7 13 13 H 1.48498 * 109.46831 * 210.00122 * 11 9 7 14 14 H 1.48496 * 109.47131 * 329.99547 * 11 9 7 15 15 N 1.46496 * 109.47446 * 239.99570 * 2 1 3 16 16 C 1.34767 * 120.00060 * 84.99990 * 15 2 1 17 17 O 1.21736 * 120.00290 * 0.02562 * 16 15 2 18 18 C 1.46382 * 120.00281 * 179.97438 * 16 15 2 19 19 C 1.33981 * 119.22960 * 0.02562 * 18 16 15 20 20 O 1.34994 * 121.68684 * 180.36650 * 19 18 16 21 21 C 1.43252 * 116.76481 * 342.82229 * 20 19 18 22 22 C 1.53546 * 108.08831 * 45.48898 * 21 20 19 23 23 O 1.36218 * 119.23326 * 180.02562 * 18 16 15 24 24 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47720 * 300.00690 * 1 2 3 26 26 H 1.09006 * 109.47034 * 60.00333 * 1 2 3 27 27 H 1.09001 * 109.46861 * 305.00089 * 4 2 1 28 28 H 1.09002 * 109.47378 * 64.99869 * 4 2 1 29 29 H 1.09001 * 109.46912 * 299.99633 * 5 4 2 30 30 H 1.09002 * 109.47381 * 59.99446 * 5 4 2 31 31 H 0.96997 * 119.99957 * 359.97438 * 6 5 4 32 32 H 0.96998 * 120.00042 * 179.97438 * 10 9 7 33 33 H 0.97005 * 119.99961 * 264.99959 * 15 2 1 34 34 H 1.07998 * 119.15485 * 0.35017 * 19 18 16 35 35 H 1.08996 * 109.73732 * 285.83605 * 21 20 19 36 36 H 1.09005 * 109.73644 * 165.13344 * 21 20 19 37 37 H 1.09004 * 109.75354 * 182.21784 * 22 21 20 38 38 H 1.08992 * 109.75815 * 61.47136 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3139 6 7 4.0530 -1.3033 2.5105 7 6 5.3950 -1.3399 2.7800 8 1 6.0936 -0.8605 2.1103 9 6 5.8577 -1.9942 3.9135 10 7 5.0064 -2.5798 4.7289 11 14 7.6885 -2.0448 4.2808 12 1 8.0596 -0.8704 5.1104 13 1 8.0112 -3.2931 5.0176 14 1 8.4502 -2.0113 3.0065 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0185 -2.3570 17 8 1.8580 1.1628 -2.4117 18 6 2.6357 -0.7084 -3.5520 19 6 2.9499 -2.0085 -3.4743 20 8 3.4116 -2.6915 -4.5433 21 6 3.1994 -2.0973 -5.8293 22 6 3.5728 -0.6109 -5.7351 23 8 2.7603 -0.0137 -4.7171 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6052 -0.2616 2.1370 28 1 1.7515 -1.7715 1.2058 29 1 3.9994 -1.0728 0.4263 30 1 3.8531 0.4371 1.3575 31 1 3.4256 -1.7342 3.1118 32 1 5.3297 -3.0373 5.5207 33 1 2.2491 -1.6319 -1.1524 34 1 2.8309 -2.5232 -2.5324 35 1 2.1515 -2.1965 -6.1123 36 1 3.8297 -2.5889 -6.5705 37 1 3.3839 -0.1223 -6.6911 38 1 4.6257 -0.5114 -5.4716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568602215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:54 Heat of formation + Delta-G solvation = -82.001339 kcal Electronic energy + Delta-G solvation = -20684.090807 eV Core-core repulsion = 17335.260798 eV Total energy + Delta-G solvation = -3348.830009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30015 -39.54830 -37.30789 -36.35043 -34.39199 -33.00397 -31.55531 -30.59963 -28.70475 -27.87160 -25.63477 -24.05747 -22.59529 -21.45523 -20.75022 -19.71590 -18.58951 -18.43983 -17.05211 -16.69506 -15.99399 -15.67515 -15.13642 -14.82093 -14.67958 -14.43752 -14.28778 -13.81185 -13.66931 -13.43255 -13.27509 -12.83959 -12.60785 -12.29583 -11.86502 -11.31756 -11.21081 -11.03657 -10.92512 -10.79341 -10.64787 -10.57990 -10.04868 -9.89321 -9.70436 -9.09952 -8.86835 -8.40792 -6.93038 -5.77186 -3.05924 1.15771 2.47792 2.87964 3.22390 3.43884 3.49087 3.50576 3.62080 3.98937 4.49424 4.54603 4.58300 4.62673 4.87759 4.95412 5.00445 5.17465 5.22663 5.34088 5.55046 5.60357 5.71555 5.74973 5.92150 6.02305 6.22027 6.27524 6.32879 6.43578 6.54335 6.80375 6.85279 7.04881 7.49825 7.70282 8.18728 8.41934 9.53120 10.10497 10.45276 11.45759 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.004131 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.035495 B = 6775.947686 C = 7779.967915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.092 0.908 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.712 5.712 16 C 0.576 3.424 17 O -0.526 6.526 18 C -0.070 4.070 19 C 0.007 3.993 20 O -0.299 6.299 21 C 0.014 3.986 22 C 0.018 3.982 23 O -0.286 6.286 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.399 0.601 34 H 0.181 0.819 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 0.161 -20.138 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.110 0.890 4 C -0.174 4.174 5 C 0.025 3.975 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.366 5.366 16 C 0.363 3.637 17 O -0.403 6.403 18 C -0.119 4.119 19 C -0.059 4.059 20 O -0.211 6.211 21 C -0.062 4.062 22 C -0.059 4.059 23 O -0.200 6.200 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.235 0.765 34 H 0.197 0.803 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.966 1.044 -20.242 21.778 hybrid contribution 1.055 -0.731 0.317 1.322 sum -6.911 0.313 -19.925 21.091 Atomic orbital electron populations 1.22176 0.95205 1.02137 1.02503 1.21038 0.93700 0.97814 0.83081 0.89020 1.22083 0.98102 1.00851 0.96316 1.20651 0.90334 0.95758 0.90757 1.42363 1.05388 1.65020 1.25048 1.19236 0.83839 1.28509 1.05514 0.91237 1.24736 0.97709 1.00858 0.97652 1.69656 1.32803 1.40700 1.15130 0.86188 0.85089 0.77043 0.77886 1.21684 1.21744 1.20767 1.45961 1.67440 1.14045 1.09177 1.17072 0.78281 0.86430 0.81928 1.90837 1.49623 1.15117 1.84750 1.20449 1.11499 0.90608 0.89302 1.23204 0.99709 0.90685 0.92305 1.86122 1.74868 1.46397 1.13758 1.23726 1.03415 0.94613 0.84409 1.23675 0.95757 0.93920 0.92502 1.86425 1.66861 1.45417 1.21300 0.92418 0.91305 0.92286 0.89957 0.91250 0.96407 0.96301 0.78299 0.93512 0.76478 0.80268 0.90100 0.86090 0.86090 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 2 C 0.15 1.99 2.57 -67.93 -0.17 1.81 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.14 -2.03 4.87 -26.73 -0.13 -2.16 16 5 C 0.15 3.02 6.15 -4.04 -0.02 3.00 16 6 N -0.73 -18.51 5.60 -59.91 -0.34 -18.84 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 11 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 N -0.71 -9.08 4.46 -55.21 -0.25 -9.33 16 16 C 0.58 8.61 7.69 -12.99 -0.10 8.51 16 17 O -0.53 -9.83 16.58 -10.06 -0.17 -10.00 16 18 C -0.07 -0.91 6.61 -37.80 -0.25 -1.16 16 19 C 0.01 0.08 10.57 29.24 0.31 0.39 16 20 O -0.30 -3.05 10.47 -30.81 -0.32 -3.38 16 21 C 0.01 0.10 7.29 37.44 0.27 0.37 16 22 C 0.02 0.14 7.31 37.44 0.27 0.42 16 23 O -0.29 -3.78 10.28 -45.77 -0.47 -4.25 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.38 10.05 7.67 -40.82 -0.31 9.73 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.40 4.23 6.44 -40.82 -0.26 3.97 16 34 H 0.18 1.54 6.08 -52.49 -0.32 1.22 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -35.32 322.45 -6.16 -41.48 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.46 Total: 7.20 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 0.28 Total: 2.25 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.14 Total: -55.64 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.96 Total: -17.63 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.32 -6.16 -41.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568602215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.521 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds