Wall clock time and date at job start Mon Mar 30 2020 00:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00000 * 2 1 4 4 H 1.48502 * 109.46836 * 90.00494 * 3 2 1 5 5 H 1.48501 * 109.47001 * 210.00238 * 3 2 1 6 6 H 1.48497 * 109.47326 * 330.00835 * 3 2 1 7 7 C 1.38813 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99914 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99748 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.31000 * 119.99709 * 127.15783 * 11 10 9 13 13 C 1.50703 * 120.00260 * 7.56108 * 12 11 10 14 14 N 1.46502 * 109.47103 * 127.00330 * 13 12 11 15 15 C 1.34779 * 119.99654 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00471 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99674 * 180.02562 * 15 14 13 18 18 H 1.08999 * 109.52311 * 304.99309 * 17 15 14 19 19 C 1.53141 * 109.52517 * 65.12189 * 17 15 14 20 20 O 1.43098 * 109.14078 * 175.14336 * 19 17 15 21 21 C 1.43074 * 113.65001 * 302.15371 * 20 19 17 22 22 C 1.53138 * 109.15221 * 57.91665 * 21 20 19 23 23 O 1.43073 * 109.14989 * 304.68655 * 22 21 20 24 24 H 0.96996 * 119.99963 * 179.97438 * 1 2 3 25 25 H 0.96993 * 120.00161 * 0.02562 * 9 7 2 26 26 H 1.08992 * 109.47289 * 300.00505 * 10 9 7 27 27 H 1.09003 * 109.46706 * 60.00639 * 10 9 7 28 28 H 1.07995 * 120.00445 * 307.16119 * 11 10 9 29 29 H 1.08003 * 120.00206 * 187.56270 * 12 11 10 30 30 H 1.08992 * 109.47248 * 247.00555 * 13 12 11 31 31 H 1.09004 * 109.46670 * 7.00495 * 13 12 11 32 32 H 0.96993 * 120.00238 * 0.02562 * 14 13 12 33 33 H 1.08996 * 109.52991 * 295.11628 * 19 17 15 34 34 H 1.08996 * 109.52231 * 55.31950 * 19 17 15 35 35 H 1.09003 * 109.52521 * 298.01245 * 21 20 19 36 36 H 1.08995 * 109.57371 * 177.85232 * 21 20 19 37 37 H 1.08995 * 109.52663 * 184.78266 * 22 21 20 38 38 H 1.09008 * 109.57798 * 64.61844 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6528 -0.6998 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0787 -4.8022 -0.0008 12 6 1.1729 -5.7451 -0.9053 13 6 2.3557 -5.7786 -1.8386 14 7 2.9795 -7.1033 -1.7890 15 6 4.0627 -7.3668 -2.5465 16 8 4.5207 -6.5075 -3.2695 17 6 4.7040 -8.7296 -2.4960 18 1 4.9573 -8.9750 -1.4646 19 6 3.7291 -9.7748 -3.0461 20 8 4.3849 -11.0455 -3.1003 21 6 5.5731 -11.0446 -3.8972 22 6 6.5473 -9.9997 -3.3456 23 8 5.8922 -8.7288 -3.2929 24 1 -0.4850 -0.8400 -0.0004 25 1 0.3556 -2.3881 -0.0005 26 1 2.6840 -3.7141 -0.8920 27 1 2.6853 -3.7149 0.8879 28 1 0.2993 -4.8457 0.7454 29 1 0.4029 -6.4985 -0.9822 30 1 2.0222 -5.5719 -2.8554 31 1 3.0807 -5.0240 -1.5335 32 1 2.6130 -7.7907 -1.2111 33 1 2.8587 -9.8404 -2.3933 34 1 3.4131 -9.4861 -4.0484 35 1 5.3200 -10.7981 -4.9284 36 1 6.0374 -12.0301 -3.8617 37 1 7.4184 -9.9338 -3.9974 38 1 6.8635 -10.2884 -2.3431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568820057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:14 Heat of formation + Delta-G solvation = -83.737260 kcal Electronic energy + Delta-G solvation = -20150.542529 eV Core-core repulsion = 16801.637245 eV Total energy + Delta-G solvation = -3348.905284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.78491 -39.18833 -36.79894 -36.32977 -34.75293 -33.25825 -32.06671 -30.30462 -28.73988 -26.53793 -25.31003 -24.53205 -22.68871 -22.25676 -20.71896 -19.04965 -17.72581 -17.38851 -17.16715 -16.89563 -16.46457 -15.98356 -15.88373 -15.37353 -14.84335 -14.45849 -14.27370 -13.80471 -13.72761 -13.33602 -13.20780 -13.04605 -12.84729 -12.43987 -12.05701 -11.79509 -11.28748 -11.05512 -10.74337 -10.68934 -10.50268 -10.02775 -10.00105 -9.64994 -9.34841 -9.22077 -9.06112 -8.67416 -7.01030 -6.11522 -3.11516 2.04922 2.37220 2.73278 3.17565 3.53457 3.58589 3.63224 3.72647 4.04538 4.39901 4.42850 4.49787 4.63113 4.69226 4.74448 4.91125 4.95235 5.08867 5.17538 5.25802 5.28831 5.55754 5.59676 5.77073 5.77501 6.07570 6.15638 6.40673 6.41650 6.46012 6.49794 6.75138 7.01501 7.30805 7.81049 8.02873 8.75283 9.21025 10.07347 10.21579 11.37269 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037982 B = 0.002892 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.010491 B = 9679.606622 C =10225.193124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.045 4.045 3 Si 1.084 2.916 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.333 4.333 8 H 0.066 0.934 9 N -0.739 5.739 10 C 0.166 3.834 11 C -0.111 4.111 12 C -0.197 4.197 13 C 0.141 3.859 14 N -0.720 5.720 15 C 0.517 3.483 16 O -0.511 6.511 17 C 0.038 3.962 18 H 0.095 0.905 19 C 0.038 3.962 20 O -0.374 6.374 21 C 0.020 3.980 22 C 0.023 3.977 23 O -0.349 6.349 24 H 0.255 0.745 25 H 0.368 0.632 26 H 0.037 0.963 27 H 0.029 0.971 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.282 -25.653 -4.638 27.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.915 3.085 4 H -0.223 1.223 5 H -0.220 1.220 6 H -0.213 1.213 7 C -0.464 4.464 8 H 0.084 0.916 9 N -0.385 5.385 10 C 0.040 3.960 11 C -0.131 4.131 12 C -0.217 4.217 13 C 0.020 3.980 14 N -0.373 5.373 15 C 0.301 3.699 16 O -0.384 6.384 17 C -0.024 4.024 18 H 0.113 0.887 19 C -0.040 4.040 20 O -0.293 6.293 21 C -0.056 4.056 22 C -0.054 4.054 23 O -0.267 6.267 24 H 0.066 0.934 25 H 0.201 0.799 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.731 -23.329 -5.199 25.446 hybrid contribution -0.329 -2.120 0.361 2.176 sum 8.401 -25.449 -4.838 27.233 Atomic orbital electron populations 1.70851 1.06054 1.28437 1.53590 1.25826 0.97060 1.01057 1.00276 0.83183 0.73945 0.75153 0.76268 1.22253 1.22028 1.21309 1.20086 0.92139 0.85630 1.48559 0.91583 1.42279 1.04911 1.00502 1.90789 1.19950 0.92876 0.84255 0.98935 1.23326 0.99138 0.94912 0.95704 1.22592 0.98774 1.02112 0.98212 1.20599 0.94051 0.83623 0.99774 1.45932 1.30202 1.15819 1.45382 1.19881 0.80703 0.88631 0.80712 1.90777 1.61706 1.47233 1.38726 1.22584 0.88333 0.94320 0.97125 0.88727 1.23154 0.94774 0.83377 1.02671 1.88114 1.39665 1.30127 1.71352 1.23330 0.86294 1.00897 0.95123 1.23359 0.95891 0.83906 1.02273 1.88258 1.37635 1.30525 1.70329 0.93377 0.79903 0.94514 0.95303 0.86870 0.86848 0.90803 0.89132 0.76652 0.87006 0.91245 0.91718 0.87347 0.87078 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.66 13.70 55.49 0.76 -28.90 16 2 C -0.04 -1.33 5.50 -17.43 -0.10 -1.43 16 3 Si 1.08 26.51 29.92 -169.99 -5.09 21.42 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.33 -9.69 9.99 -15.06 -0.15 -9.84 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.74 -19.13 5.59 -61.09 -0.34 -19.47 16 10 C 0.17 3.42 6.34 -5.19 -0.03 3.39 16 11 C -0.11 -1.76 9.63 -36.03 -0.35 -2.10 16 12 C -0.20 -2.55 9.63 -36.02 -0.35 -2.90 16 13 C 0.14 1.95 5.76 -5.19 -0.03 1.92 16 14 N -0.72 -7.84 5.51 -61.47 -0.34 -8.18 16 15 C 0.52 6.78 7.18 -10.98 -0.08 6.70 16 16 O -0.51 -9.34 16.51 -14.26 -0.24 -9.58 16 17 C 0.04 0.38 3.25 -27.81 -0.09 0.29 16 18 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 19 C 0.04 0.30 6.30 37.23 0.23 0.54 16 20 O -0.37 -3.21 10.85 -48.80 -0.53 -3.74 16 21 C 0.02 0.13 7.05 37.23 0.26 0.40 16 22 C 0.02 0.17 7.05 37.23 0.26 0.43 16 23 O -0.35 -4.15 10.03 -62.51 -0.63 -4.77 16 24 H 0.26 7.86 6.77 -40.82 -0.28 7.58 16 25 H 0.37 9.63 6.49 -40.82 -0.27 9.37 16 26 H 0.04 0.78 5.30 -51.93 -0.28 0.50 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.49 5.29 -51.93 -0.27 1.22 16 32 H 0.40 2.93 8.38 -40.82 -0.34 2.58 16 33 H 0.11 0.62 8.06 -51.93 -0.42 0.20 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -36.85 320.50 -7.27 -44.11 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.29 Total: 6.87 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.41 Total: -2.60 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.08 Total: -56.55 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.39 Total: -18.09 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.09 Total: 21.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.85 -7.27 -44.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568820057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.622 kcal (2) G-P(sol) polarization free energy of solvation -36.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds