Wall clock time and date at job start Mon Mar 30 2020 00:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00000 * 2 1 4 4 H 1.48502 * 109.46836 * 90.00494 * 3 2 1 5 5 H 1.48501 * 109.47001 * 210.00238 * 3 2 1 6 6 H 1.48497 * 109.47326 * 330.00835 * 3 2 1 7 7 C 1.38813 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99914 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99748 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.31000 * 119.99709 * 127.15783 * 11 10 9 13 13 C 1.50703 * 120.00260 * 7.56108 * 12 11 10 14 14 N 1.46502 * 109.47103 * 127.00330 * 13 12 11 15 15 C 1.34779 * 119.99654 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00471 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99674 * 180.02562 * 15 14 13 18 18 H 1.08999 * 109.52311 * 304.99309 * 17 15 14 19 19 C 1.53141 * 109.52517 * 65.12189 * 17 15 14 20 20 O 1.43098 * 109.14078 * 175.14336 * 19 17 15 21 21 C 1.43074 * 113.65001 * 302.15371 * 20 19 17 22 22 C 1.53138 * 109.15221 * 57.91665 * 21 20 19 23 23 O 1.43073 * 109.14989 * 304.68655 * 22 21 20 24 24 H 0.96996 * 119.99963 * 179.97438 * 1 2 3 25 25 H 0.96993 * 120.00161 * 0.02562 * 9 7 2 26 26 H 1.08992 * 109.47289 * 300.00505 * 10 9 7 27 27 H 1.09003 * 109.46706 * 60.00639 * 10 9 7 28 28 H 1.07995 * 120.00445 * 307.16119 * 11 10 9 29 29 H 1.08003 * 120.00206 * 187.56270 * 12 11 10 30 30 H 1.08992 * 109.47248 * 247.00555 * 13 12 11 31 31 H 1.09004 * 109.46670 * 7.00495 * 13 12 11 32 32 H 0.96993 * 120.00238 * 0.02562 * 14 13 12 33 33 H 1.08996 * 109.52991 * 295.11628 * 19 17 15 34 34 H 1.08996 * 109.52231 * 55.31950 * 19 17 15 35 35 H 1.09003 * 109.52521 * 298.01245 * 21 20 19 36 36 H 1.08995 * 109.57371 * 177.85232 * 21 20 19 37 37 H 1.08995 * 109.52663 * 184.78266 * 22 21 20 38 38 H 1.09008 * 109.57798 * 64.61844 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6528 -0.6998 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0787 -4.8022 -0.0008 12 6 1.1729 -5.7451 -0.9053 13 6 2.3557 -5.7786 -1.8386 14 7 2.9795 -7.1033 -1.7890 15 6 4.0627 -7.3668 -2.5465 16 8 4.5207 -6.5075 -3.2695 17 6 4.7040 -8.7296 -2.4960 18 1 4.9573 -8.9750 -1.4646 19 6 3.7291 -9.7748 -3.0461 20 8 4.3849 -11.0455 -3.1003 21 6 5.5731 -11.0446 -3.8972 22 6 6.5473 -9.9997 -3.3456 23 8 5.8922 -8.7288 -3.2929 24 1 -0.4850 -0.8400 -0.0004 25 1 0.3556 -2.3881 -0.0005 26 1 2.6840 -3.7141 -0.8920 27 1 2.6853 -3.7149 0.8879 28 1 0.2993 -4.8457 0.7454 29 1 0.4029 -6.4985 -0.9822 30 1 2.0222 -5.5719 -2.8554 31 1 3.0807 -5.0240 -1.5335 32 1 2.6130 -7.7907 -1.2111 33 1 2.8587 -9.8404 -2.3933 34 1 3.4131 -9.4861 -4.0484 35 1 5.3200 -10.7981 -4.9284 36 1 6.0374 -12.0301 -3.8617 37 1 7.4184 -9.9338 -3.9974 38 1 6.8635 -10.2884 -2.3431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568820057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:14 Heat of formation + Delta-G solvation = -112.565102 kcal Electronic energy + Delta-G solvation = -20151.792598 eV Core-core repulsion = 16801.637245 eV Total energy + Delta-G solvation = -3350.155353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60986 -40.10696 -38.15203 -37.12782 -36.36628 -34.71799 -32.96080 -32.04125 -29.51468 -27.80690 -26.52259 -25.69705 -24.68107 -22.94030 -21.69368 -20.26304 -19.41961 -18.52215 -18.21328 -17.71482 -17.31437 -16.91593 -16.67532 -16.44296 -16.24906 -15.77703 -15.57529 -15.33661 -15.11227 -14.53427 -14.46225 -14.15909 -13.93028 -13.32609 -13.19182 -12.81268 -12.67384 -12.62133 -11.99067 -11.93385 -11.88053 -11.68025 -11.32441 -11.06858 -10.99899 -10.46107 -10.33576 -10.03107 -9.13368 -8.45943 -5.39902 0.90789 1.35675 1.56540 1.67406 1.81495 1.82872 2.60335 2.68838 2.88552 3.34522 3.38224 3.58620 3.70987 3.80671 3.92670 3.93135 4.04099 4.10590 4.21833 4.24167 4.44983 4.50556 4.51450 4.74498 4.76035 4.78017 4.79453 4.97128 5.21122 5.47994 5.52081 5.77001 5.81889 5.84567 6.41144 6.45441 7.03990 7.07288 7.93779 8.04142 9.06581 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037982 B = 0.002892 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.010491 B = 9679.606622 C =10225.193124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.102 4.102 3 Si 1.131 2.869 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.289 1.289 7 C -0.341 4.341 8 H 0.063 0.937 9 N -0.753 5.753 10 C 0.165 3.835 11 C -0.139 4.139 12 C -0.152 4.152 13 C 0.140 3.860 14 N -0.699 5.699 15 C 0.515 3.485 16 O -0.572 6.572 17 C 0.043 3.957 18 H 0.119 0.881 19 C 0.042 3.958 20 O -0.382 6.382 21 C 0.018 3.982 22 C 0.017 3.983 23 O -0.389 6.389 24 H 0.246 0.754 25 H 0.363 0.637 26 H 0.031 0.969 27 H 0.022 0.978 28 H 0.127 0.873 29 H 0.158 0.842 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.421 0.579 33 H 0.141 0.859 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 -27.902 -4.299 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.293 4.293 3 Si 0.955 3.045 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.215 1.215 7 C -0.473 4.473 8 H 0.081 0.919 9 N -0.398 5.398 10 C 0.039 3.961 11 C -0.158 4.158 12 C -0.171 4.171 13 C 0.017 3.983 14 N -0.353 5.353 15 C 0.301 3.699 16 O -0.450 6.450 17 C -0.018 4.018 18 H 0.136 0.864 19 C -0.035 4.035 20 O -0.301 6.301 21 C -0.058 4.058 22 C -0.059 4.059 23 O -0.308 6.308 24 H 0.056 0.944 25 H 0.196 0.804 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.145 0.855 29 H 0.176 0.824 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.260 0.740 33 H 0.159 0.841 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.880 -25.670 -4.823 27.587 hybrid contribution -0.295 -1.562 0.201 1.602 sum 8.585 -27.232 -4.622 28.925 Atomic orbital electron populations 1.70957 1.07051 1.28037 1.55923 1.27285 0.97180 1.04680 1.00148 0.82590 0.73445 0.71384 0.77082 1.20697 1.20171 1.21546 1.20423 0.92328 0.87179 1.47322 0.91890 1.42489 1.04933 1.01621 1.90751 1.20025 0.93784 0.84176 0.98105 1.23045 0.99568 0.94686 0.98483 1.22818 0.98078 1.01274 0.94952 1.20402 0.93941 0.84443 0.99508 1.45668 1.29439 1.15170 1.45055 1.20553 0.80415 0.89386 0.79563 1.90749 1.63514 1.49347 1.41365 1.22637 0.88392 0.92437 0.98374 0.86391 1.23206 0.94946 0.82655 1.02700 1.88107 1.40295 1.30029 1.71643 1.23493 0.85685 1.02048 0.94607 1.23615 0.96275 0.82487 1.03475 1.88205 1.38490 1.33158 1.70927 0.94369 0.80434 0.95161 0.95995 0.85471 0.82419 0.91599 0.92228 0.74030 0.84101 0.92310 0.92092 0.84617 0.85713 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.94 13.70 21.65 0.30 -61.64 16 2 C -0.10 -6.08 5.50 84.86 0.47 -5.61 16 3 Si 1.13 53.48 29.92 68.60 2.05 55.53 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.34 -20.14 9.99 84.03 0.84 -19.30 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.75 -39.70 5.59 -347.18 -1.94 -41.64 16 10 C 0.16 6.85 6.34 85.63 0.54 7.39 16 11 C -0.14 -4.18 9.63 25.65 0.25 -3.93 16 12 C -0.15 -3.52 9.63 25.65 0.25 -3.27 16 13 C 0.14 3.74 5.76 85.63 0.49 4.23 16 14 N -0.70 -13.91 5.51 -466.78 -2.57 -16.48 16 15 C 0.52 13.17 7.18 87.66 0.63 13.80 16 16 O -0.57 -21.52 16.51 15.91 0.26 -21.26 16 17 C 0.04 0.79 3.25 29.90 0.10 0.89 16 18 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 19 C 0.04 0.58 6.30 72.03 0.45 1.03 16 20 O -0.38 -5.54 10.85 -136.00 -1.47 -7.01 16 21 C 0.02 0.20 7.05 72.03 0.51 0.71 16 22 C 0.02 0.23 7.05 72.03 0.51 0.74 16 23 O -0.39 -8.97 10.03 -122.90 -1.23 -10.20 16 24 H 0.25 15.51 6.77 -92.71 -0.63 14.88 16 25 H 0.36 19.45 6.49 -92.71 -0.60 18.85 16 26 H 0.03 1.32 5.30 -2.39 -0.01 1.31 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 2.01 5.29 -2.38 -0.01 2.00 16 32 H 0.42 4.67 8.38 -92.71 -0.78 3.90 16 33 H 0.14 1.02 8.06 -2.39 -0.02 1.00 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -82.41 320.50 0.27 -82.15 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.16 Total: 23.89 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.03 Total: -3.33 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -4.22 Total: -119.77 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -2.45 Total: -38.47 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 2.05 Total: 55.53 kcal Total: -82.41 0.27 -82.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568820057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.416 kcal (2) G-P(sol) polarization free energy of solvation -82.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds